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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0089900 |
| Transcript ID | LotjaGi4g1v0089900.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; TAIR: AT1G26850.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2; TrEMBL-Plants: tr|G7LA51|G7LA51_MEDTR Methyltransferase PMT2-like protein; Found in the gene: LotjaGi4g1v0089900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11918063..11921676) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAAAACCAAGTTCAGCAGATGGTAGGACTAGAAGCTCATTGCAGATCTTTATAGTAGTTGGTCTGTGCTGCTTTTT CTATATATTAGGTGCATGGCAAAGAAGTGGTTTTGGGAAGGGAGATAGCATAGCATTGGAGATAACGAAAAATAATGCCG AATGCGATGTAGTTCCGAATTTAAGTTTCGACTCTCATCATGGTGGACAAGTTAGCCAAATTGATGAAGGTGGTTCGAAT CCTAAGGTATTTAAACCGTGTGCCGCTCGTTATAATGATTACACTCCCTGCCATGAGCAGCAACGCGCGATGACGTTCCC GAGAGAAAACATGATCTATCGAGAGAGGCATTGCCCCCCGGATGAAGAGAAGTTGCGCTGTATGATCCCGGCACCCAAGG GTTATGTAACTCCATTTCCATGGCCCAAGAGCCGTGATTACGTTCCGTATGCTAATGCGCCTTACAAGAGCCTTACAGTT GAAAAGGCTATTCAGAATTGGATCCAATACGAGGGAAATGTATTCAGATTCCCTGGTGGTGGAACCCAATTTCCTCAAGG TGCTGATAAATATATTGATCAACTTGCGTCTGTGATACCTATAGCTGATGGGACAGTGAGGAGTTTACTTGATACTGGTT GTGGGGTATGTTTGTTATCTCAAATTCTTATTTAGTTTTGTTTAACCTCTTTTACCTTTCTCATACATGTTACTTTGACT AAGGACTGTCTTATTTGAGCTTATCTTAGTGCATAAACATTTATGTAAATAACTAATTGCCTACCTATAAGCTGTTTTTA ACTTATTTTCATCACTTGTTCAGATTAGCTTATAATAAGTGCTTATGCTTATCTATACCTATTTTCAGTTTATTTCAATA AGTTTCCCAAATTAGCTTATGTTTGTTATGTCAAATTCCTATTTAGTTTTTGTTAAACCTCCTTTGCCATTCTTGCGCAT GTTACTTTGGCTAGCTGCATTATTACTTTTTTTGCTATGTACTCTTCTGAAAAGTAAAGTTGTTTTGCTCAGGTTGCCAG TTTGGGTGCATATCTTTGGAGCAGAAATGTTATTGCCATGTCTTTTGCACCAAAGGACTCTCATGAAGCACAAGTACAAT TTGCTCTTGAAAGGGGTGTACCTGCTGTCATTGGTGTTTTTGGAACCATAAAGTTGCCTTATCCATCTAGAGCCTTTGAC ATGGCTCATTGTTCTCGTTGTTTGATTCCCTGGGGAGCAAATGGTGAGAACTTCGCATTAAACACCATCTTCTTCTTCTC ATCTACATATTAAAAGCTTTGGACAAGAAAGCGCTGTTTCCCTATTCTTGTTTTTCCTTCTTCTATTTGATTCGTCAATG TATATTGTTATACTCTTGATAGCAACAGTTTAAGATTGCATTTTGCGTTATTCATTTTCAGATGGAATGTATATGATGGA AGTTGATCGAGTTCTAAGGCCTGGCGGTTATTGGGTGCTTTCGGGTCCTCCAATCAATTGGAAGGCTAACTACAAATCCT GGCAGAGGCCAAAGGAGGAACTCCAGGAAGAACAAAGAAAGATTGAAGAGATTGCAACACAACTTTGCTGGGAGAAGAAG TCAGAGCAGTCTGAAATTGCCATTTGGCAGAAGACTACAGACTCTGAATCATGTCGTAGCAGACAAGATGATGCTAGTGT AGAATTTTGCAAATCCTCAGATGCTGATGATGTCTGGTGTGTCCCAGTTTTTTATATTATAATAATATATTATATTTAAC ATTTAATTATTTATATTCCTTTCATTTCTTTTTAATAGCCATGGAAACATACATGCATACCTAAAACTAAAGAGGTGGAT AAAATTATGATGTTGTCGATATTGATTTTGTCTCTGCCTTGATTTTCTAGATTCTATAAATGTGACTGATGTTTAACTTT GTTAGAAAAAAGAGGTGTATGTACTTAGTAACTAACTTGGAATGGCTTTGTTCTGTGGCTATAGGTATAAGAAAATGGAG GCCTGCGTCACTCCCGTCCCTCAAGGTTCAAGTGGGGGTGTTAAACCATTTCCAAGTAGGCTGAATGCTATCCCTCCTAG GGTTGCTAGTGGCCTTGTTCCTGGAGTTTCTTCTGAGACATACCAGGATGACAACACAAAGTGGAGAAAGCATGTAAATG CTTACAAGAAAATTAATAGACTGTTGGACACCGGAAGATATCGCAACATTATGGATATGAATGCTGGTTTGGGTAGTTTT GCTGCAGCTATTGAATCTTCTAAGTTATGGGTTATGAATGTTGTGCCTACTATAGCTGAGAAAAATACATTGGGTGTCAT ATACGAGCGAGGTCTGATTGGCATCTATCATGATTGGTATGGTTTCATAACTTCTTGATCCTATTTTATTCATCTTAGTT CTCGATCTTAAGTGCTTAGATACCTATTGTGACTGTACCAGTCTTATAGTATAATTCAATTAGTTCTCAATTATCTGATA GTATGACTTGAAATAGTTTTCCAATGCTGTAATGTGCTTTCCTGCAATTATATATCTGACCATAACCTGTAAATTTTGAA CAGTCAGCTATTTCATCATTGTTTTCCTTATTTTTTGTTCTCTTTTCATCCAGGTGTGAAGGCTTTTCCACATATCCAAG GACATATGACCTCATTCATGCCCATGGCCTCTTTAGCCTGTACAAATCTAAGTAAGTGCTCCTTTGGTCAAATGGCTTTT CTACTATTCATCTTTGTTAATTCCTATTTAAAACCGGAGTAAATTTTTAACGCTTATTTTCCCACTGAGTGGCATCGGCC AAACTAATCAAAGATGCTATGATATCCTATCATGAATCAGTCTAATGATAGACCATTTATTATATCTTCCAAAAACACAG AATAGACCTATCTTTGCTTTAAAAGCTAGCTCAAATGTGAGGATTGCTCTATCCTTTATAATGACTTATTTGGTCATATA TCTCTAGTCAATCAGAGACCTTTAACCTATCTAAACCTCTCTTAAATAATTTGGATTTAGCTTTTGTATGGTCAAAGTAT TGATGCCATAAATCAGATCATTGTAAAAATATTGATGCCCTCAAGTTACCATTACAAGGTAGTAGATTATATTATCATCA CATGGTTTCGTAGTTCTGCATTACTTGTGTGGTATTTTATGATGTTATGTGGGCTAGTCAGCTGGTGATTAGGTTGTATA ACGAGAGTGCGATAACAGCTCATATGTGGTTTTTGTTGAATTAAGCATTCAAAATGTTGCCTGGAATGTGGATTTAGCAT CCCATTAGCAGAAGAAACACTTTTCTTTTTAGTTCTCTTGAGTTCCTTTCTGTCGAAGTTGTGTGTTCATTCTTGTGCCT CAAGCATGTGTATGATAATCAAATGCAGATGCAATATAGAAGACATTCTTCTCGAGATGGACCGGATTTTGCGACCAGAA GGTGCTGTCATATTCCGCGATGAAGTTGATGTTTTAATCAAGGTAAAGAAACTTGTTGGAGGAATGAGATGGGATACCAA ATTGGTTGACCATGAGGATGGTCCTCTTGTTCCTGAGAAGGTACTAATTGCTGTGAAGCAGTATTGGGTCACTAATTCCA CGTCAACACAATAG
CDS sequence (LotjaGi4g1v0089900.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAACCAAGTTCAGCAGATGGTAGGACTAGAAGCTCATTGCAGATCTTTATAGTAGTTGGTCTGTGCTGCTTTTT CTATATATTAGGTGCATGGCAAAGAAGTGGTTTTGGGAAGGGAGATAGCATAGCATTGGAGATAACGAAAAATAATGCCG AATGCGATGTAGTTCCGAATTTAAGTTTCGACTCTCATCATGGTGGACAAGTTAGCCAAATTGATGAAGGTGGTTCGAAT CCTAAGGTATTTAAACCGTGTGCCGCTCGTTATAATGATTACACTCCCTGCCATGAGCAGCAACGCGCGATGACGTTCCC GAGAGAAAACATGATCTATCGAGAGAGGCATTGCCCCCCGGATGAAGAGAAGTTGCGCTGTATGATCCCGGCACCCAAGG GTTATGTAACTCCATTTCCATGGCCCAAGAGCCGTGATTACGTTCCGTATGCTAATGCGCCTTACAAGAGCCTTACAGTT GAAAAGGCTATTCAGAATTGGATCCAATACGAGGGAAATGTATTCAGATTCCCTGGTGGTGGAACCCAATTTCCTCAAGG TGCTGATAAATATATTGATCAACTTGCGTCTGTGATACCTATAGCTGATGGGACAGTGAGGAGTTTACTTGATACTGGTT GTGGGGTTGCCAGTTTGGGTGCATATCTTTGGAGCAGAAATGTTATTGCCATGTCTTTTGCACCAAAGGACTCTCATGAA GCACAAGTACAATTTGCTCTTGAAAGGGGTGTACCTGCTGTCATTGGTGTTTTTGGAACCATAAAGTTGCCTTATCCATC TAGAGCCTTTGACATGGCTCATTGTTCTCGTTGTTTGATTCCCTGGGGAGCAAATGATGGAATGTATATGATGGAAGTTG ATCGAGTTCTAAGGCCTGGCGGTTATTGGGTGCTTTCGGGTCCTCCAATCAATTGGAAGGCTAACTACAAATCCTGGCAG AGGCCAAAGGAGGAACTCCAGGAAGAACAAAGAAAGATTGAAGAGATTGCAACACAACTTTGCTGGGAGAAGAAGTCAGA GCAGTCTGAAATTGCCATTTGGCAGAAGACTACAGACTCTGAATCATGTCGTAGTATAAGAAAATGGAGGCCTGCGTCAC TCCCGTCCCTCAAGGTTCAAGTGGGGGTGTTAAACCATTTCCAAGTAGGCTGA
Protein sequence (LotjaGi4g1v0089900.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKPSSADGRTRSSLQIFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKNNAECDVVPNLSFDSHHGGQVSQIDEGGSN PKVFKPCAARYNDYTPCHEQQRAMTFPRENMIYRERHCPPDEEKLRCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTV EKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIADGTVRSLLDTGCGVASLGAYLWSRNVIAMSFAPKDSHE AQVQFALERGVPAVIGVFGTIKLPYPSRAFDMAHCSRCLIPWGANDGMYMMEVDRVLRPGGYWVLSGPPINWKANYKSWQ RPKEELQEEQRKIEEIATQLCWEKKSEQSEIAIWQKTTDSESCRSIRKWRPASLPSLKVQVGVLNHFQVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| PANTHER | 2 | 367 | 366 | 1.3E-223 | – | |
| PANTHER | 2 | 367 | 366 | 1.3E-223 | ||
| TMHMM | 13 | 32 | 20 | - | – | |
| Phobius | 15 | 33 | 19 | - | – | |
| Phobius | 34 | 390 | 357 | - | – | |
| Pfam | 93 | 368 | 276 | 5.6E-127 | ||
| SUPERFAMILY | 115 | 337 | 223 | 8.62E-28 | ||
| Gene3D | 181 | 366 | 186 | 1.7E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi4g1v0089900.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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