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LotjaGi4g1v0090900.1

Overview

Field	Value
Gene ID	LotjaGi4g1v0090900
Transcript ID	LotjaGi4g1v0090900.1
Lotus japonicus genome version	Gifu v1.2
Description	Epidermal patterning factor-like protein; TAIR: AT4G37810.1 EPIDERMAL PATTERNING FACTOR-like protein; Swiss-Prot: sp\|Q9T068\|EPFL2_ARATH EPIDERMAL PATTERNING FACTOR-like protein 2; TrEMBL-Plants: tr\|G7JFA2\|G7JFA2_MEDTR Epidermal patterning factor-like protein; Found in the gene: LotjaGi4g1v0090900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:12059338..12061057) extracted from Lotus japonicus Gifu genome v1.2.

GAGAAGGATGTGCCGTGATGAGGTGGGTCTGCAAGGATCGCATACTACAAGAAACCCAAAAAAGGGTACAACACTTCCCA TTCCAATTCCCATTCCCACTATATATCAAAAACCCATACAGCTAGCTTGTACAATATAAAAAAAAAAAGATAATAAATTA CATAATAACTGGTGTATGTACTATAAACAATATCATACAATATTTATATAAAGAAACTCAGAACTTAAAATCCACAGCTG TAAATGCATGTCCTTTAGCGGGAACTTGTCCCTCACATCTGGTGAAATTTGTGGCGTTTTGCTGTTTCTGGCCCCTGCTC CTCTTTCATTTCATTTTACTGGCGGTTTCTCAGAGTTCTGTTGTTCTGAATAATGATGCTTCTTCTTTGAATTTTCATTT AGCAATTATTATATAATCTTTGAGTAATAAGAGGCTCGTCAACCGAAGGAGAAGTGTTTCCCTTTTCGGGGCTCCTCCTT TTCTTGCAATCTCTGCAATTTTTTCTCATTTGTCTTTCTATGTTCCATCACTTCAACACCATAAACATATCATAAAGCAA TGCATTGCTTGTTAGTTGCTACTAGTTGCTATTGTGTGGTACTGTGATGTTGTTTCCCAAATCCTCTTTGTCTTATATCT AGTCCCTTCCTTCATCCTCCTTTCTCACACACACTACTCTTTCCCTATAATTGGAACCAAATTTCATATTCTTTTTGCTT GAGCTCTCATATTTCTTCACAAAATGAGGTTTCATCATCATGTCATTGGTTGTCAAAGACTTGGCTTTGTTTGCATTTCT CTTTTCTTTCTGATATTTTCAAGCTGGATCCAGCAAGGGTTATTAGTAACTGAAGGTAAGTGAGAATTTTTTAAAACATT TAATAGCATGTTTGCATCATATTCTTTTTCATCAGAATCAATTCTGGAACCTCGAAGCTACTCATAGAAGGTTCTCTCCG GAGTTGATTCTGTCTTCAGAATTAATTATAGAATGGTTTCCAAACATGGACTAAGTAGAAACAAGTTTGAACTAACATTG ATATCTCTTCTCTGTTTTCTAACAGGTAGAAAGACTCACAACAAGCAAAGTGGTTTTGACCAGGTAAAATTTAGATTCTG TATGAAATTGCTATTAGCATGAGTGAGAAAAGACATGAAATTTACTAGGAATAATTGTGATGATTGTTGCAGAAAGTGAG TGAGGATAATAAGATGCTACTGAGAGCACAAATTGGTTCAAGGCCACCAAAATGTGAGAGAAGGTGCAGGTCATGTGGGC ACTGTGAGGCTATTCAGGTACCAACAAATCCACAAGTGCAGAATGGGAAAATCAACTCTTCAAAATTCTCCAGAATTGCT TATGCCAAGGGAGATTACTCTTCTAACTACAAGCCCATGAGTTGGAAATGCAAATGTGGGAACCTTATTTTTAATCCTTG AATCTAATTGTATCACAATTTAGTTCCTTTATATATGATCAAGGATACAAGCTAATTAATTCTGTACATGAATATACACT TTTAAGTTATTCTTTTTTAGTTTTTTGGAGCTTTATTTGTTCTTACCTCCATATCTCCTTATTGTGAGGAACAAGGTTTT ATCTCTATTATATTTTGTTCTCTATTGATATTAAGTCCTTCCTATCATTTATCTTGTGTTATCATCACTTGAAGCTGCTA ATTCTTATCCAACTAGCAACATTGTGTGTGCTATTTCTGG

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0090900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGTTTCATCATCATGTCATTGGTTGTCAAAGACTTGGCTTTGTTTGCATTTCTCTTTTCTTTCTGATATTTTCAAG CTGGATCCAGCAAGGGTTATTAGTAACTGAAGGTAGAAAGACTCACAACAAGCAAAGTGGTTTTGACCAGAAAGTGAGTG AGGATAATAAGATGCTACTGAGAGCACAAATTGGTTCAAGGCCACCAAAATGTGAGAGAAGGTGCAGGTCATGTGGGCAC TGTGAGGCTATTCAGGTACCAACAAATCCACAAGTGCAGAATGGGAAAATCAACTCTTCAAAATTCTCCAGAATTGCTTA TGCCAAGGGAGATTACTCTTCTAACTACAAGCCCATGAGTTGGAAATGCAAATGTGGGAACCTTATTTTTAATCCTTGA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0090900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRFHHHVIGCQRLGFVCISLFFLIFSSWIQQGLLVTEGRKTHNKQSGFDQKVSEDNKMLLRAQIGSRPPKCERRCRSCGH CEAIQVPTNPQVQNGKINSSKFSRIAYAKGDYSSNYKPMSWKCKCGNLIFNP

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR33109:SF7 View details on PTHR33109:SF7 Search for proteins/transripts with this domain View external data on PTHR33109:SF7	1	132	132	8.3E-47	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	11	11	-	–
PANTHER	PTHR33109 View details on PTHR33109 Search for proteins/transripts with this domain View external data on PTHR33109	1	132	132	8.3E-47	IPR039455 Show description in modal box View details on IPR039455 Search for proteins/transripts with this domain View on EBI InterPro Service
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	12	29	18	-	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	13	35	23	-	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	30	132	103	-	–
Pfam	PF17181 View details on PF17181 Search for proteins/transripts with this domain View external data on PF17181	64	132	69	2.1E-19	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0010374 View details of GO:0010374 AmiGO InterPro QuickGO	Biological process	Stomatal complex development	The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells.	Subterm of View details of GO:0009791 View details of GO:0090558

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0090900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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