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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0093000 |
Transcript ID | LotjaGi4g1v0093000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151SE09|A0A151SE09_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0093000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:12493090..12494707) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTGGGGGGCGACTGTGTCTGATAAAGGCAGTTTTATCATCTATCCCACTCTACTATCTTTCATTCTTTAGAATGCCC GCTGGAATCTTGTCACGCTGTAAGAGTATCTTATCTCGATTCTTGTGGGGTGGGAGTGACGGAGTGAGCAAAATTGCTTG GGTCAAATGGGAGAATATTTGTAAACCTGTTCGGGAAGGTGGTTTGGGGGTCAGAGATTGGAGAAAATTTAACTTTGCTC TTATCGGTAAGTGGAGGTGGCGGATGTTAAAGGAGAAGGAACAGTTTGTGGTGTCAAGTTCTAGAGGCCAAATATGGAGG ACTTGTTAGAAACAGTGATTCCACTTGGTGGAAAGATCTACATTCTATTTGTGGAGATTCGAATTGGTTTAATAATGCAA TATGCAGGCGTATCGGGGATGGTAGAGATATAAAATTCTGGTTGGATGATTGGGGTGGGGGTGGGTCGTTGAAATCTTTA TTTCCGCGTCTGTTTCTTCTCTCGTCCCAGCAGAATGCTACAATTCATGACATGGGTGCTTGGGATGGGTCAAGCTGGCA TTGGAATTTTCTTTGGTGTAGAGCTCTGTTGGATAGGGAGTTGCAATCAGTAGCGGATTTACATGACCGTCTACGTGGCT TTTCTCCTAAGGAGGGTCAAAGGGATTCATGGGTATGGATTAAGGAGAGTTCAGGCTGGTATACTGTTAGTTCTGCTTAC GAGGATTTGCGTGGTATTGGTCAGGAAGTTGAAGGTGATGTTTTCAGCAAGCTTTGGAAATCTATAGCTCCTTCAAACTC AATTTCTTTGGCTTGGAGAGTCTTCCTTAAAAGAATCCAAACTAAGGATGCCCTGGCTAGAAGGAGTGCTCTGCCAGTCA ATTCTGGAACGGACTGCGTCTTCTGCTTGAATGAATTGGAATCCTGTAATCACTTATTCTTTGGCTGTCCTATCAGTAGG AAGATCTGGATGAAAATTCTAAATTGGCTTGGGGTTCAATCAGTGCTGCAACTGGATCCTATCCCTCACTTCATGCAGTT CTGCGGGTTATTTACAGGAGGGTCAAAAGCTATGAGGGCTGTCTCAATGATTTGGGTTGCGTGTGTCCACACTATTTGGT CTTTCCGCAACTCTGTTATTTTCCGCAATGAGGTGTTCGAAGTGGATAGAGTTTTTGAATTTATTCGGTTTAAATCCTGG ATTTGGTTGAAAGCTAGGGAAAGGAGCTTCAATTCTTCACACTATGAATGGACTGCAAATCCGACTTACTGTGTTAGTTT GTTGGTTTGATTGTGGGTGGCAGGCTCTCGTGGCAAGGCTTTGTGGAGATAGGATCTTGTTCTAATCTTAAGATAGAGTT GCTGCTATAATTTTATCTTATCTTTTGCTATTTTCTATCCTTGTTTTGATTTTTCCAGCTTGAATCTGATTACTTGCTGA ACAATCTTATCTCTTTGTATTTGGGTTAGCACCTCTTGTGCTCTATTTAAATACAAATCTTGGCTTATCAAAAAAAAATT GGGTGTTAAAAGGGTTATTGTTGGGATCCATTTCACTAAAACGATATTTAGAGCTACAAACAAGAGTTTATTGGAGGCTA AATAGAAAAACTAGAGGG
CDS sequence (LotjaGi4g1v0093000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCTTGGGATGGGTCAAGCTGGCATTGGAATTTTCTTTGGTGTAGAGCTCTGTTGGATAGGGAGTTGCAATCAGT AGCGGATTTACATGACCGTCTACGTGGCTTTTCTCCTAAGGAGGGTCAAAGGGATTCATGGGTATGGATTAAGGAGAGTT CAGGCTGGTATACTGTTAGTTCTGCTTACGAGGATTTGCGTGGTATTGGTCAGGAAGTTGAAGGTGATGTTTTCAGCAAG CTTTGGAAATCTATAGCTCCTTCAAACTCAATTTCTTTGGCTTGGAGAGTCTTCCTTAAAAGAATCCAAACTAAGGATGC CCTGGCTAGAAGGAGTGCTCTGCCAGTCAATTCTGGAACGGACTGCGTCTTCTGCTTGAATGAATTGGAATCCTGTAATC ACTTATTCTTTGGCTGTCCTATCAGTAGGAAGATCTGGATGAAAATTCTAAATTGGCTTGGGGTTCAATCAGTGCTGCAA CTGGATCCTATCCCTCACTTCATGCAGTTCTGCGGGTTATTTACAGGAGGGTCAAAAGCTATGAGGGCTGTCTCAATGAT TTGGGTTGCGTGTGTCCACACTATTTGGTCTTTCCGCAACTCTGTTATTTTCCGCAATGAGGTGTTCGAAGTGGATAGAG TTTTTGAATTTATTCGGTTTAAATCCTGGATTTGGTTGAAAGCTAGGGAAAGGAGCTTCAATTCTTCACACTATGAATGG ACTGCAAATCCGACTTACTGTGTTAGTTTGTTGGTTTGA
Protein sequence (LotjaGi4g1v0093000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAWDGSSWHWNFLWCRALLDRELQSVADLHDRLRGFSPKEGQRDSWVWIKESSGWYTVSSAYEDLRGIGQEVEGDVFSK LWKSIAPSNSISLAWRVFLKRIQTKDALARRSALPVNSGTDCVFCLNELESCNHLFFGCPISRKIWMKILNWLGVQSVLQ LDPIPHFMQFCGLFTGGSKAMRAVSMIWVACVHTIWSFRNSVIFRNEVFEVDRVFEFIRFKSWIWLKARERSFNSSHYEW TANPTYCVSLLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_EUK | 1 | 13 | 13 | - | – | |
PANTHER | 23 | 248 | 226 | 4.3E-30 | – | |
PANTHER | 23 | 248 | 226 | 4.3E-30 | – | |
Pfam | 57 | 146 | 90 | 5.4E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0093000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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