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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0093900 |
| Transcript ID | LotjaGi4g1v0093900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | D-ribose-binding periplasmic; TAIR: AT5G67620.1 DUF4228 domain protein; Swiss-Prot: sp|A3CYJ5|PEPQ_SHEB5 Xaa-Pro dipeptidase; TrEMBL-Plants: tr|I3SWU7|I3SWU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0093900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:12611662..12616093) extracted from Lotus japonicus Gifu genome v1.2.
TCATATATTACCTTTCTTCGGAAAAATTTATTATGGTCATCTAAAAACTTGTGTAAAGTTACACCTCTACCTTTTGACCT GCCACTTCAGGTTTTTTGTATTTTTTATATTTTTAAAAATTACAATAGTTAATATATTATACAATTATTAAGTAAATAGT TAGAGAATGATTAGGGTTCATTTAAGATTAACTCATGTGGTAAATAATTAAGTTAATAATTTATCCTTAATCTTTTCCTC TTCTCTCTCCCTTCTTCATCTCTTCTCTCTTCAACACCAGATCCAAACTTCTATCAATATCCAAACCCCAAAACCCATCC CACCATCTCTGCAAAGCCAATGGCCTATTCACATATGATTATTCCAGATAGAAGTCAATGGAGAGGGCATGGAGAAGGGT AAAAAATCCAAACCCAGCCAAACCTAGAAATAAAAAAACCATTCCTAGCCCTAAATCGCGATTCCTCCATGGCAGAGTCC CCTAATCGATCGGAGCAAGAGAAGACAGGGGATGCAGAGGATGGGTTTTCATCAATTTTCCTGCAAAGTTTTCTTCTTTT TGCGATTTTGTGGTGTGGGTGTTGAACAAGAATTGATCTTGCTGCTCCTGGGAACAAGATCTGGTTTTTTTCCTTGGTTC TTCATTCCCCTATCCTGGATTTAGGGCCAAATAGGATGCAAAACTAGGTTTTGAGAAGCAAATGAAAAAAAAATGATGTG ATGTTGTGGGTTCGTTAGTCTGTGGTGGTTGCGGGTATGAGTTTGATGACGACGGTGGTTTGGTTCGGTTTCTGCAAGGA AGAAAGTGGAGCCTCGGAATGTCTCGAGTTCAGGTACGAGGAGATCGGGTTCGATAGGCAGTTTGGCGAATTCAGTTTAT GTTCCGCCGAGGCGGAGTAGCACCGGAGGATTGGTCCAGAGGCCGTCAGTGTCTGGGTATGAGTTTCAGAGGTTCAGATC TGGTTTATTTGGTTTTGTTTGTAAAGCTTGAATCTTTGGAGAAAAATATGGTGTTGTATCTGTATCTTAGTGCTTAAAGT TGCCTACTTTTTAGATAAATGGTTTCAGGTCACTGAATCTTTTTGTTGTTGTTGAATGATGAACATGATGAGGTGAGTGG TTGCTGAAGCAAACAAATCTACAGGAGGAGAGAGGACCTGAGGAATTGGGGAAGATGATAATGAACAACCATCTTAAAAT GTGGATTATTAATAATTATTTCCCTAATTATATTATAATATATTAAATATTTTTATTTTTATAAAATATAAATTACTTGC TAAATTTCCTATGCACAAGTTTTTAGAAGACCATAATAAACTTCTCTCCTTCCTTCCAAAACCTCTTATATAATCTGACC CACTTTCTCATCACCTGCTCTCCTCAATCACTCTCTCACCCTTTCATGCCATGCTTTTCCCTGTTCACAACTCAGGCCTC TACATAAAACATCACACTATTCTTCAAAACCCGCAGTACTATTGAGATCATCCCATTCCCTCAGCATGATTCTTGGCGTG CCTCAGTGAACTAACCTGCAGGAAGAACAACAACATCGTCACCTTCATTTATAACAACCAATTAACACAAACAATCCACA CACGTTCTCTCTGCCTCTGTCTCTGCTCTGAATCCTCAGAAAAAAGAAACTGCACATTCCGTACCTGTCTTTCAAACGTC ACCCAATTGGAAGACGTAACGAAAGTAACGTTTTCCTACAGATTTCACTTTTACTATTTATCATCATCACTCACCACTCA ATCAAGATTCAAACTCACTTCTTCAGCTAGCTAGCACTTGTTTGTGATGGGGAATTGCCAAGCTGCAGAGGCTGCCACGG TTGTGATTCAGCACCCAGGGAACAAGATTGAGAGGATTTATTGGTCGCTAAGCGCCAACCAGGTTATGAATTTAAACCCT GGTCACTATGTTGCACTTGTCTTAATGTCTTCTGAGAATAACAACAACAATGGTACGCCATTGAATTCAAAGCATCTTAA GCTTCTGAGACCCGAAGATACTTTGCTTATTGGCCAGGTTTACCGCTTGATCAGCTTCGAAGGTCAACTTCTTACATATA TGATATGATTTGATTTGCTATAATCTCTGTTTTTAATAATAAAATAAGAAATTAATTGATCTTTTAAATTGTGTTTTTGG TTGCCTACTACAGATGTTTTAAAAGAGTTTGCTTCCAAGAAATCTGGTAAGCTTGGGAAATTGCTCAAAGAGAGAGGTAC TCATGGGGTTCACCTTAAGCACAAAGATTCCAGAGCTACAAGTTCTGATACTCCCATTAAGGTAACAATTTGATCTGTGT TATAAATTTTAAATTGGTTTTTCTTTTTCTCATAAAACTATTAAGTGTGCTTTTAGATTTCTATTGAATTCAATATGATG TGAATCTACCTTGAGGTCAACGTGTGTCAGAATTCTACTTATCTAATCCACGTTAATCTCAAATGTGATAAATTCTAACT TTTCTATTAATGTCACGTCTTGATACGTAAAATTACATTTGCCTTAATTAGCTCGAACGTCAAAATAAACATGCACTATA CAATCATGGTCCATGTGTGCCTAGAGTATCACTTTGATGTTTCCATTTTTCTTAGATTTTTAAGGTGGGGTTTAACTGAA ATGTTGAGGTATTGTAGTATTTAATTTTTTAAAATTTGATTATTAGAAAGAAGAAAGGGTAGAGGGATAGGGGTGACACA TAGAAGCACAGGCACTTACATGAGTTGCAGTATAATTTACAACTACCGAATTGTCATGATAATTTAGATGACTATATACC ATGGGAAATTTGGAAGTACGTTACACAATCACAATGCATGCTCCACGCACTATCTAAATAATGATGCACCCTTTTGTTTT GTTACTTTATCACTTTCTAAGTTTTTTCTTCACGTTTCCACTTCATGAAAGCACTACCTAATTACAAAAGGAACGTAAGG ACCAGCGCTGAGCTAATCATAGGATGGTTGGATGCATGCTTTTGATTAAAGAAACAAACAATCTTTTCAAACCAAGTTCT TTTTAAAAGAGAAAACAGAAAAAGAAATTAAAACAGCAAGAAATGCAATGTATGATTGGAAATCTTTTATGATTGATTAT GGAGAAAGTTATATGAATAATTAAATAGTGTTAAAATTGATTTTGAAGAAAAGAAATTAGTCTTAACATGTTATTACCCC TTGAATCAAACACCAACCATCTTTACCATTTGGGATAGATGAAGGGACCAAGTAGGAATTATGAATGAAGAGTCACCCCT CCTTACCCTTTGCATTAGGGTCTAAAGTGGCCAAGTTGGAGTTCTTTTATAACTGGGAAATGATTTATAGTGTTTGGCCA ATCAATTCCAACGGTGATTGGATTATTTTATTAATTTTTTAAAATAAGTAATCACTATTAATGAGTATGATACTCATTTT ACCATTAAAAAACTAAGTTCTTAAATAAGTCAATTGCATTCCCGGTCCTGTTGGATATGAATCATCTGATGACTTTTGGA TTGTGATATGAATCAATATGATTTGTCATTTTCCCTTTGCCTCTTTGGCTCTTTGGCGTGTGTGCCTATCCAATACAAAT GACATTGTTATCTCTTTTTCTTGTGTGTCAGGTGGAACAGGATATTCAACGAATGGGAAACAATGGCAGCAGCAGCAATA ACAAAGGTGTAGGAAGGCATTTCAATGGTGGTAGTGGGCATTGGAGGCCAGCTTTACAGAGCATTGCAGAAATTGGAACT TGAAAGCAATGTTATCTTATCCCCTCTGACCCCCATCACTCCCATGAATTACAGATCAAACCATGCGCCAACATTCCTTT CCTTTCACCCTTTTCAATACATTCATATTATGTAATGTAATCTTGTGAATTTTAGGTGTGATATCTCACGTTGATTATTA GCATGTTTGAAAAATTGTATGAACTTTTTTCATTCAAAATCAATTGTGTCACTTAGAAGTTAATCACATAAGTTTTATTT TATAATTGATTTTGACTTTATAATTAATTATAGAGAAATTTTCATACATGCATGCATAATCTACTACAAAAGTTAAAATT TATAGTTTCATCCCTAATTGACTATGAAGCTTGAACCGACGGGCCCAAGGAGTGAGGTGGGTTGGACTCGGATTAAACAC TTACACGATGGAGGATGGGGATGGAGAACCTTGGGTGGAGAGTCTAAATCGAAGTGGGGATCGCCGCACTTGAGGTACCT ACAGGAACTCTGATGCTTAAGTCAGTAAAGGAGGTGGAGTTATGGAGAAACGTAAAGTGAGGGAATCAAAAAACTTATAC CTTCTCGTGTTGAAGAGGTGGGTATTTATAAAGGAGGTTTGTGAGGCTCATGGGGTGATCACTTTCAAGTGTTGCTGCCA AGGGCTCGTGCAGTGTTGGATCTTTGTTGCTA
CDS sequence (LotjaGi4g1v0093900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAATTGCCAAGCTGCAGAGGCTGCCACGGTTGTGATTCAGCACCCAGGGAACAAGATTGAGAGGATTTATTGGTC GCTAAGCGCCAACCAGGTTATGAATTTAAACCCTGGTCACTATGTTGCACTTGTCTTAATGTCTTCTGAGAATAACAACA ACAATGGTACGCCATTGAATTCAAAGCATCTTAAGCTTCTGAGACCCGAAGATACTTTGCTTATTGGCCAGGTTTACCGC TTGATCAGCTTCGAAGATGTTTTAAAAGAGTTTGCTTCCAAGAAATCTGGTAAGCTTGGGAAATTGCTCAAAGAGAGAGG TACTCATGGGGTTCACCTTAAGCACAAAGATTCCAGAGCTACAAGTTCTGATACTCCCATTAAGGTGGAACAGGATATTC AACGAATGGGAAACAATGGCAGCAGCAGCAATAACAAAGGTGTAGGAAGGCATTTCAATGGTGGTAGTGGGCATTGGAGG CCAGCTTTACAGAGCATTGCAGAAATTGGAACTTGA
Protein sequence (LotjaGi4g1v0093900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNCQAAEAATVVIQHPGNKIERIYWSLSANQVMNLNPGHYVALVLMSSENNNNNGTPLNSKHLKLLRPEDTLLIGQVYR LISFEDVLKEFASKKSGKLGKLLKERGTHGVHLKHKDSRATSSDTPIKVEQDIQRMGNNGSSSNNKGVGRHFNGGSGHWR PALQSIAEIGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 170 | 170 | 4.3E-59 | – | |
| PANTHER | 1 | 170 | 170 | 4.3E-59 | – | |
| Pfam | 1 | 168 | 168 | 2.7E-30 | ||
| MobiDBLite | 135 | 159 | 25 | - | – | |
| MobiDBLite | 135 | 150 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0093900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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