Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0095200 |
| Transcript ID | LotjaGi4g1v0095200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151R2K2|A0A151R2K2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0095200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:12722607..12728257) extracted from Lotus japonicus Gifu genome v1.2.
CCTAATTCTAAACCTAAACTAATTACGCACAATTAACATACTCAACCACTTCCCAACTATTCCTAATTCCCAAATCAAAC CCCAATTTCCCAATTCATCAACCGTGAAGAACCCTAGTTCTTTCTTCTTCTTCTTCCATTTCGAGCCCTGCAATCAATCT TCTTCCTCTCGCCGATTCTTCCTCTCGCTGCTTCTTCCTTATGCTGTGCTGGTGTTGTTCGTTCGAGAAGGTCACCGTTT AGGACAAGACTCTTCGTCTTCGATTTTGTGGCAATCAGACAAGCTTCTGGAGAGACCCTTGGTGTGAGGGAACTACTCTG AAGAACTGTTTCAAGAAGCTATTTCATTTATCCACTCAGAAAAATTGCTTGATCAGCGACATGTGTAGCTGGGAAAATGG TGAGAAAATTTGGGTGTTCAGTTGGAGAAGACATTTAAGCTTGAGGAAAAGTGCATTGGTAGAAGAGCTCCAAAGGGTAA TTGCTGACAAACCATTGTTTGAAGGAGTGATGGATTCCAGAATTTGGACTGCAGAACCAGGGGGAGATTATTCTGTGAGC TCTGCTTACAAATCACTTCAGAAGAATGAAGGTTTAAACTTGGACCCTGTCTTCCGTTTATTATGGATTCCAGCAGCACC TTCAAACATTTTTGCCTTTACTTGGAAGGTTTTGCTAAATAGAATACCAACTAGAATGAATCTTCTTAGAAGGCATATCA TGCCCAGTTCTGAGGTTGCTAACTGCCCTGTTTGTCTTGAGGCTGAAGAATCGGTGGACCATTTATTTATCCTATGCCCT TATGCTGTCAAAGTTTGGACCCTGTGTTATTGTTGGCTTGGTCTGCAACTTACTTTACCAGAAATCTGCAGGAAACATCT GATGCAGCATGAATTCCCTGGCTTTAATTATTATCAGAATGGGGTTTATCGTGTTCTTTGGATGGCTGTAATTTGGTCCT TGTGGATTCACCGGAATCATATCATTTTTAGGGATACCAGATCACGTGAGGAAGAGGTACTAGAAGCTGCACTTTTAAGG ACTTGGCACTGGATTTCTAGTAGGGTAAAGGGTTGCTCATTCTCAGTCTATGATTGGCTTTCAAACCCAATTGTGTGCAT CAAAATGCTGGGTTAGAACCTTTCAATTTCTACCTTGGATTTTCAGGAGATGTGTTTGGCTCCTCTTTGTGCGCTTCATG TTTCTTGGCTGGATTGGGTTGGTGATCTGGTTACTGTTAGAATTTGGATTTTGTTTGGCTTGTTGGTACAGGGATGACAA GGAGGACAGCTTTTTATCAGTTTCAAGTCTGGTTTCAAGTTCAAGTTTGAGGCTCTTTTAGATTAGCAATTTGTTTACTT TTGTTTCTGTGCTTTTCTTCTCCTTGTTCGTTATTTTCTTTTCCCCCGTATCTCTTTTCTTCTTTCTCTGCATTTGCTCT TTTTACTGTTTTCCTTTCTATCTTTTTTCTTTGTACCATGGGTGGCACCCCTTGTGCCTTTCAATGATAATTTGGCTTAT CAAAAAAAAAACTAAGTACCCACACTCTCTTCTTCGAATACGAACAAGCTTGTTCGACTGGCTGTTATCTTTGAGGCTTT GGGTTGCCTTTTGGTTTTGTGTGGTTCAGGGTTTATGGTTTGTGTGGGTGGGTTTTTTCGTTTAGGGTTGCTATTTAGGG ATAAATGTTTATTTGGCTTCTCTGGGGTTGCAGGATGGTGTTTAAACTGATTGTTCGTCATGGTGGTTTGTTTGGGACCG CCACTTACCTGCATTACTTTGGTGGTGGTCGAACTGAGCTTCTTGATCAAGATGAAGACATATGGTCCTACTTTGACACG GTAGCCATTGTGAAAGAGATGGGATACAAGGAGTTTAAGTTATGGTGGGTCACTGCTGAGGATGCTGAACGACATGTCTT CAGGGATTACAAAACTGATGCTGATGCTCTTGAATTTGCTAAATATGCGAGCACACTTGGTCAAGGTTTGTTGTTTGTAG AAAATCTATCACAAGAGCAACCTAGTGCTGGCAATGTTCCCACTATTGCCATGCTTCCCTCTGTTCCCACTGTTTCAGCA CAAAACAACAAGGTACCAGCACAAAATAACAAGGTTTCAACACAAATGAAGAAGGTCCAACCAACAAAGATGAAATGTGT GAGAAGGTCCAGTCGTATACAAGCTGTGGTGACTAAAGCAAAAAATTTGGGCAAGCCTTCCTTAGTGGTTCTCTCTGACG ATGATGAGATGGAAAATGAACAAGTTGAGCAAGTAGACCACACTCCTACTGGTCCAAAATTAGAGCTTCCTGTGAATGTT TTTGAAGAACAGCAAGTAGAACACACTCATTCTCTTCCAGAAGTTGAGCTGCCTGTGAATGTCAACACTAGTCCTGACAA CAATGTTCCTCAGGTAGATGTTGCTCCTGAGAACATAAGTCCTGAAAATGACAATGTTCCTGGTACAGAGCAAGTCCCTG AGGTAGATGTTGTTGTTGGTCCTGAGAACATAAGCCCTGACAACAATGTTCCTGAAGTTATTGATGCAGTGTTTGGTGGA GATGGTGAAAATTCTGACAGTGATGTTTCTGTGCAAAGAGAAAGGCTTCAGGATAGTGATGAAGAAAGAGACTTAGGGCA TGAAGATGTATTGGACAACACAGCTTTTGCTGAGGCAGAGGCTCTTTTGAATGAGCATATCAAACAGATGCTTAATAGTA GAAGTGAAGAAGGTATGGGTTTTGCTTTTGGGGATGAATCAGATTCTGAAGGAGGTTATGAGAGTGAGGATCTAGAGAGT GTGCCAACTGATTCTAAGGTGGAAGATGTTCCTAGAAGAAGATTCCCTAAGTTTGTTAAGGAAAAAATGGGCCCAGATTT CAAATTCAGCCTTGGAATGGACTTTTCATCAGTGCTACAGTTCAAAGATGCTCTACATGATCACTTTGTTACTAATGGCA GAGAATTCAAATACATGAAAAATGATAGCATAAGGTGTAGGGTAAAGTGCAGAAGTGAGAGTTGTCCATTTGTCATCTTA TGCAGCAAGGTTGGCAATAAAGAGACTTTCAGAATCAAAACTCTAGTTGGAGAGCACGATTGTGCAAGAGTGTTTGATAA TAAGTCAGCTAGTGTGAGGTGCGTGAAGCTCAAGCTGTTGAATAAAGTGAGTACAATGAATAAAATCAGCACAAATGAAA TAGTAGATGACTTCAGAGTTAACCATGTCACTGGTATAACCAGATACAGAGCATGGAAGGGTAAGCAGCTGGTAATTGAA GAGGTTGAGGGAGCAATTGAAATGCAGTATACCCTTCTATGGAGATTTAGCAATGAATTGCGGAAGAGGGCTGCAGGAAA CACATGCAAAATTAATTTTGAATCACCAAGAAGCACTTTGTTTCCTAGATTCAGCAGATTTTACATGTGCTTGGATGGTT GTAAGAGAGGGTTTCTAGCTGGGTGTAGGCCATTCATTGGCTTGGATGGATGTCATCTGAAGACTAAACATAGAGGAATC TTGTTGGCTGCAGTTGCTAGAGATGCCAATGAGCAGTATTTCCCACTAGCCTTTGTTGTGGTTGAGTCTGAAACAAAAGA TAGTTGGATGTGGTTTATGGAGCTGTTGATGGATGACATTGACCCTGAAAGATCAAGAAGATGGGTCTTTATCTCATATC AACAAAAGGTAATTTTTTTTCTTTTTTTGTCATGCTTTTGTATAATTTGTCTAGATTTTTGTCATGCTTTTTCCTTCTAG TCACTGGTCTGCCTTAATGTAGATATTGTCATGATTTTGCCAAATTTTATGTGATCATAGGGTTTGATGGAGGTTTTCAA AGAAGATATGCTACATGGTTGTGAACATAGACTATGTGTGAGACATCTCTATGCAAATATGAAAACTAAATTTGGAGGTG GTGTGCTTCTAAGAGATCTGATGATGGGTGCTGCCAAGGCTACATATGAAGCTGCCTGGAAAGAAAAGATGCTTCTGATA AAGGATGCCAATGAAAGTGCTTATCAGTGGTTGATGGAGAAGCCAACTTCAAGCTGGTGCAGACATGCATTTAGCCTTTA CTCAAGATGTGATGTGGTCATGAACAACCTCTCTGAGGCTTTCAATGCAGCAATTATGTTGGCTAGGGACAAGCCTATTT TAACTATGATGGAGTGGATTAGGACCTATGTAATGGGAAGGTTTCCAAAAATGATGGAGAAGCTGCACAAGCATCATGGA CAGATCATGCCTAGGCCATTGAAGAGGATATTACATGAGGTTGATCACATTAAGAATTGGATCCCTAGGGTTGTTGGTGC TCAAAAGTATGAGGTTCGACATACTATCACTTTGGAGAGACATGTAATAAGCTTGAAGGATAGGAGCTGTACCTGCAGAT TCTGGGAACTTAATGGCTTTCCTTGTAGACATGTTGCATCTGCACTTACTTTCAATGGCAATGATCCTAAACAATTTGTA GATGATTGCTACAAGAGGGAAGCCTACAATGCAACATATGAAAATTATGTGACTCCATTACCTGGCCCTAACCAGTGGAT TATCACCCCTCATGATCCTGTGTGCATTCTACCACCATATATAAGAGAAGTGCAGGGAGGCCAATGAAATTGCGGAGGAG AGACCCAAATGAAAATGATCCTAACCCAACTAAATTACAGAGGGGGGGGTGCAACTTGGAAGTGTAGTAGGTGCAAGCTA TATGGGCTCAACAAGAGAGGATGTAAGAACTCTGTTCCATAAGAGCAATCTGAAGTTGAACCACAAGTTGATGAAGTTGT ACCAGGTGAAGCACAAGCTGCAACTGCACAAGATGATGGAGTACAACCTACAACTGCACAAGATGATGGAGTTCAACCTA CAACTGCTCAGAAGAAACCAAAGGTAACTAATTCAAACACTGCTTCATACTATTGCTATGAAACCTATAATGATAGATCT TGTTTATTTTTGCAGAAAAAGGGATTTAAAAAATGCAGTAGATGCAAGCAGTATGGACATTATAAAACCAGATGCAAGAA CATCCCAGAGTTAATTGTAATGCCTCAGCCCCGCTCTCTTCCTGGGATTGTTATAAGGGAGCCTGTCAATCCTAATGTCA CAGCCCCACTCCCTCTTAATTCTGGAAAAATGGTATTCTAATAATTCATTTTCTGGTAAAATTATGCAATGAGTAACTGG TAAAAATTATGCTAACAATTGAATTTAATTTCAGAAAGAAAAGGTAGTGGAAGATCCAAGATCTGTGGATGAAAACTGGC ATAAGGCCTATGCAGGGACTCATGGAGGAGCTACTACTTCATATGTCATGACTGGGAATCAGGGAGGAGCATCCACTTCT GGTTCTGTCCTTCAAGTTCAGATGGAGATTGAGACTTCCAGTACTGTTGAGAGGGCTGCAACTGAGATTCCAGTACCCAG AGGAGACCAAGTTATTGAAGATGGAGAAACTTTACCAACACAGTGCAGTGTTGTCCTTGACACAGCAATGGGGGAATCAA CTTGACCTTGCATTGGATGAAGGGAAAGCTTTTTGAGTGTATGAAAAAAGCAAGGGAATCTTTCAAACTTTTTAAATGGT TCACATGGTTCTGAAGCAGTAGAATATGGACCACATGACCACTATGGTCGA
CDS sequence (LotjaGi4g1v0095200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTAGCTGGGAAAATGGTGAGAAAATTTGGGTGTTCAGTTGGAGAAGACATTTAAGCTTGAGGAAAAGTGCATTGGT AGAAGAGCTCCAAAGGGTAATTGCTGACAAACCATTGTTTGAAGGAGTGATGGATTCCAGAATTTGGACTGCAGAACCAG GGGGAGATTATTCTGTGAGCTCTGCTTACAAATCACTTCAGAAGAATGAAGGTTTAAACTTGGACCCTGTCTTCCGTTTA TTATGGATTCCAGCAGCACCTTCAAACATTTTTGCCTTTACTTGGAAGGTTTTGCTAAATAGAATACCAACTAGAATGAA TCTTCTTAGAAGGCATATCATGCCCAGTTCTGAGGTTGCTAACTGCCCTGTTTGTCTTGAGGCTGAAGAATCGGTGGACC ATTTATTTATCCTATGCCCTTATGCTGTCAAAGTTTGGACCCTGTGTTATTGTTGGCTTGGTCTGCAACTTACTTTACCA GAAATCTGCAGGAAACATCTGATGCAGCATGAATTCCCTGGCTTTAATTATTATCAGAATGGGGTTTATCGTGTTCTTTG GATGGCTGTAATTTGGTCCTTGTGGATTCACCGGAATCATATCATTTTTAGGGATACCAGATCACGTGAGGAAGAGGTAC TAGAAGCTGCACTTTTAAGGACTTGGCACTGGATTTCTAGTAGGGTAAAGGGTTGCTCATTCTCAGTCTATGATTGGCTT TCAAACCCAATTGTGTGCATCAAAATGCTGGGTTAG
Protein sequence (LotjaGi4g1v0095200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCSWENGEKIWVFSWRRHLSLRKSALVEELQRVIADKPLFEGVMDSRIWTAEPGGDYSVSSAYKSLQKNEGLNLDPVFRL LWIPAAPSNIFAFTWKVLLNRIPTRMNLLRRHIMPSSEVANCPVCLEAEESVDHLFILCPYAVKVWTLCYCWLGLQLTLP EICRKHLMQHEFPGFNYYQNGVYRVLWMAVIWSLWIHRNHIIFRDTRSREEEVLEAALLRTWHWISSRVKGCSFSVYDWL SNPIVCIKMLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 233 | 226 | 5.6E-32 | – | |
| Pfam | 57 | 146 | 90 | 9.9E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0095200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…