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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0098300 |
| Transcript ID | LotjaGi4g1v0098300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lysine-rich arabinogalactan protein; TAIR: AT4G37450.1 arabinogalactan protein 18; Swiss-Prot: sp|Q9FPR2|AGP18_ARATH Lysine-rich arabinogalactan protein 18; TrEMBL-Plants: tr|G7JCS7|G7JCS7_MEDTR Uncharacterized protein; Found in the gene: LotjaGi4g1v0098300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:13298807..13307655) extracted from Lotus japonicus Gifu genome v1.2.
CTAACGGCTAATGGTGGCCCATCACACCCTGGGACCCACCTAACAAACCAACGGTCCAGATCAATCGGCATATATTCGTT ACGTTCCCACAATGCCTTCATCAAACCCCCTATATAAACCAAACCCTTCACCCAAATCTCTCAAACCCTCTCTTTCTCTC TCTAACTCGAACACTTTCTCTCTCTAAAAACAAACCCTGTGAGTTAGTTATGGATCGTAACGGCGTGTTTTCACTCGCAT TGATCTGCATCGTCGTCGCCGGCGTCGGAGGCCAGTCTCCCACGGCGGCGCCGACCACATCACCGGCTACTCCGTCAGCA ACCACTCCAGTTTCCACACCAGTAGCTCCCGTTGCTTCCCCCAAACCCGCTGCCACAACACCCGCTGCATCTCCTTCAAC AGCCACAGCTCCTGCTCCGGCGACGACCACACCTGTGACGCCAGTGACCTCACCGCCGCCGGCGGCTGTTCCGGTTGCCT CTCCACCACCTGCTGCTGTTCCAGTCAGCTCACCTCCAGCCAAATCTCCACCTGCACCTGCTCCTACAGCTGTTCCCGTT GCAGCGCCTGTCACCACCCCCGAGGTTCCTGCTCCGGCTCCTAGCAAGACGAAGAAGGACGCCGCACCAGCACCGTCACC GGTGGTTCCAGATTCACCTCCGGCTGGAGCTCCTGGACCTAGTGATGCGGTTTCTCCTGGTCCAGATGGTGCCGGCACCG CGAACGATGAGGTTAGTTAGTTTCGTTGTCTTGTTCTCTGTGTTTAGCAACAATGTGCTTCAGATTCAGATCTGAGATTT GCAATTGCAGTTCATGAAAGAGTAACATGCTTGTTTAACTTTACTGAGTTTAGATCTTTGTCTTTCACCAACACAACACG GAATCGTTTGTCTTTTGTGTTTTTTTATTTATAAAATAAAAATATAATTTAATATTAATTTTAGAATTTGAAGTTTATTT AATTAATTTTGGGATCTGAGATTTTTGTGTTTTTTTTCAGAGTGGAGCTGAAACCATGAGGAGCTTGAAGATGATGGGAG GCTTGGCTATGAGCTGGGTTGTTCTTGTTTTTATGTTCTAGACAATATTGCTTTTATCATCATATTCTTGTATTATAATT TATTAATTTGTTTTCCTTTTTGGCTCTGTGATGGGCACGCATCATTACATTGATTTACATTGTTACTCATTCTGATTCTT ATTATTATTCTATCATTCTATTGTTAAGTTTCTCTTGTGTCTGTTAAATTCTTAGGCATTTTATTGAAAATATGCTGTTT TTTTATTGCAAAGGAGTATAGATTTATTAAATAGTAACCTAATGTGAGTAGAGACCTCCATTACAGTCTTACAAGAGACA AAACTCCAAGGTCTTTGTCATGGTGGACCATAAAGATGAGATTGTTCGGCAGCTGTATACAGAACAAAAAACAGCTTATC AAAGATATTCACCTCAAGCGTTACATAGCCACATATGTAGGTAGAACCACGAATAATAGTTACATATTAAATTTTGATGT TCCCTTTGCAATGCTATTCAACTTGCAACTTTTGGATGCTTGTTCTCAAGTTTTTTTTACACATGAGAGGATCCAAACCC ATATTTCCCCTTTCCTTTAATTTCTTGACAACCCGGCCGGCCTATTTTCTCTTTTTCTATGAAAATTATTGAGAGGTAAG TGAAAACTAAAGCTTAGGACTTCATGCATCCTCTTTACGGGTTGTGCTCATCAAAATTCTTCTGCCATGGACATGAAATA CTTGTTCTCACAATCATCTCATCTCCATCCTTGAGCATCCTCCAATGATGTCATTGCCTCACCTCACCCCCCCTTCACCT CTGGCTTATTACCTGGCACCTTCCATCACTGCCACTACTTCCTATACACTTTGTCGTTACTGTCTTTGTCTCCCTCCATT ACTGCCACCGCTCGACATCATCCACCACTCAACATCGTACACCATTGTTGCCACCTTGCACCATCACCATAGTCGTGATT ACCCGAGGCCTTCACCACAAATGGCAGAGCATGTTGAATGGTGGAGGAGGATACCAAGTAATGTGAAGGTGATTGAGAGT ATCATGCAGCGGCGAAGGCGATAAATGATACTCAATAGTGAAGCAGCACTTATAAATTTTACAAGGTTAGAAAAAATGAA CTTTTCAATGCTAAATAAAAATCGCTAAAAAAAACTAAAACTTGAAGTACAAAATTGGAAGCTAGTTTAGATTCTTAAAA ATTGAAAACATAAAACTAAAAATCATCCCAAACATGACCTAAGCTATTCATACAGGTGAATTATGTGCATCTAATAGGAG TCAAATAAAATTTTAACATGACATTTGGAATTAGGGAAGAAACGAACGTAGACAATAACAAAAGATAATATGAAAAGTCA ATGATTTTTTTCCATGTTTCCAAATACAGTTCACCAACATGTTACCCAATCAGGTACGAGAAATTGTGCAGGTTTTTTTT TTCCGTAGCACCACCGTGACATGAACAAAAATGGAGGAATCCGTTTTCTTTTTACAAGATTATGAAATGCTGTATATTTC GAAATTGCAAATTCTATTTTACCAAGGTAATAAGAGCATTAACTAGCAAAAAACAACAGCTGAAAAGAAATGTAAAAATT ACAACATGCGAAATTGTATTTCAATCTTGCTGCACCCTTTGATTCACCTGTATATTACAATATTCACAAACAAAATTCCG TTTACAGATGATGGAATATATAGAGAATTGTCTATGTACTCTGTCAGGGTTAAATGATCACTCGATATCGAGGACAGCTT GATTTCTTTCAAAACAAAACTTGACCAGTTCAGTGACTATGGTTTGTATAAATTGCTCTTGATGGTGGTAAGTTGAATAT GCTACTGAAACTAATCAAGTATGATGTTAAGCAGTAGTAGCACAAACTTGTTAGCTCATAATGGCTGAAGTTCTTGCTCA GGAACAGCTTCATCAACCGGCTTGTATGGATGGGCGTTCTGCTGTCTCTTTTTCCAAATTAAGAATATTCCTAATATTGA CAATCCTATAAGCAACGCGAGTATAGAAACTAAACCCACAACCATGTGATATTGCTGCCACCAATTCCTGAATCAGTTTA GAAAGAAGTGTTAGCATGTAAGTGGTTGTAGATAAGGTGAGATCTGTGAAGTAATACATGATGCCAACTACAAGATGGTA TGGAACAGCTAAATTTCCAAATTTAAAGCTTTTTTTCCTTTTAATAAAAAGCTTACCATTTTGGTGGAGGCTCAACATTC CAATCAATCAACTTATAACCTCCAAAGGTGCCAGGAAGTTGAATGTGATGCTCAGAAAGCTGAGCAATTATTCTCTGCAT ATAGAAAATCACCATCAAATGGGCAGTCCTCGCACAAATACAGATGCACAAATGTCAACTTACCGTTGCAGTTGCATCAG AAATGTAATCAGCATTCGGCCTTGGGGTTATGGCCCATCTAGAGAGGGAACCATTTCCAAAAGAGGTAAAATTCAGTAAG TGAACCTGTGAACATCCATTTAAGAGTGTTATTACCAATTTAAGACGAATTAATAAAACAAACTACAGGCAAAATTTGCT AAAAATGCATATAGTTTATTTGGTTTCCTCAGAAAGTTTTCATCACGACTTGGAGCCTTAAACTTCACCTAACAACCGGA GCTAGCCACCTAAGCACATGTATATTTTTAATCAAACACTTCTAATTGCATTAAGATTATTTATCAAACTTAAATCTTTA ATCTATGTTATCAATCGCGGAACACTGCGGCTTCCCAAGAAACTGGGGTAGCGGGATACTACACAGCGGGATGGCCGGTG AAACTGTGGTCGCCGGAGGTCCATCGGAGAGAGGCCGGGTGGTGGCAGTTCGTGCTTGAGAGAGCAAAGGAGACAGTCGT GCTTCCCAGGTTGTGGAGGCAGAGGCGCGCAGGCTGTCTTCAATTTAGGGTTCCTTTCGTAGGGAAATTCAATAAAAGCC CCTAAAAGTATCCTCTTAACCTTTTAATTCAAGAGTATTTTCATAAGTCTAGGGCCTCTTCCCTATCACACCTCGACCGC ACGTGAACACCGCGATAGCGGTCGCTCCAGCCGCAACGGCGAACTGAGACGCGATGAGCCATGCCGCCCCAAGGGGTCAG CACGACGCGACGCTGCAATCCCAGCGCAATTGTGCGTGATCGATAACATAGGCTTTTAATTATGCAAACAAAATGTTCCT GCAATGTAGTGATAATTTTCTAACCTGGGAAGTATTAACATCTAACTCATGTGCCATCAATCCAGCCAATTCTGTGATGT GAGGCTTCATATCCACATAACTGATGTTAAATGATATTGCAATTGTTATTTGTGCAATTTTGAGTTCACCTGTGCATTAA AGTTGATTAAAGCACACCAGTCACTAATGAGCATATACAGTAAAAGAGATTGCACTCAGTTCGGAGATATATATAAAAAG CATGATGACTTATGTTCAGGAGACGTCAAAACCTGATCCATGTTAATAGATGATATATTTGTATGAACTTCTAAATACAT ATCGGCAGCTTATAATACCTGCGGGTACATGATGCTGCGATACAGGTGGAGCAACTGAAGGCGCCAATGCTTTGGTTGAA TTTCTTACTTCTGTATTTGGAGCCATTTGTGGTGGGGCAACAGATGTCTGTAGTCTTTCCCATAACTCAGCACAGTTAGT TTTCCAGAAACCAATTTTTGTTTGCTCACGATCATAGGTTACAAGAGTGTTTCGGACAACAATGCCTATGCAAACAAAAA TGACATGGGAAATGTCACTAAAGTATTGCGGAAACTCATACCACAGAAGTTAGCCATATAAAAAATTTGATAGGGACAAT AAATCACAAGGTAAAGCATGAAAGGGCACAAAAATACCAAAAGTAAATAAGTTACCTCCTAAAAGAGTAGTAGGATCCTT TCCATTTTGAAAAACTCCCAGACAATATGCACCTCTCACTTTTGAATGCTTCACAAAAGAATACCACATAAAAAAGTAGG GATAATGAAACCAGTAAGATTTCATAACCAATTGCACCAAGCAATAAACAAAGCTAAAGATACTAATGATTTTATATAGC TACCCGGAACATGTAATTTTCAGGTGACAGCGAGTACTTCTGACCATTTCCAAATACCATGTCAACCACTGGAAAGCTTT TAGAGATTTGAGAGACATCACTGAAATACAAGTAAACCCAAACTTTCAATTAAACTGCAACGGAAAAGTCATGTGAACTC TTAATTTTACATACATACGTTCCAGCACCAGAAAAACATATATCATGATAATTTGGATCTGGACCACTGATTTGATTCAA AGATTGAAGTTCCTTGACAATCTGCAAACAGATAAGTACATAATCAGACTCATCAGTTCGACAAGATACAATTATGTCAG TAGCACTTTGTGTTTAAAAGAAAATACACTCCAAATGACGCACACTGATCAAAGCAAAATAATATACTTCAAATCCTGAT CTGCTTGGGACAAATAACAGAGAAAACCGATGAAGTCCGCAATTAACTGATTGGAGATTCCTCAAAATATATAGAAACCA TCAAATGCCAAATTAAAAGTATGGGCATACATATTCTGCCTATTTGAATGCAGAACGTCAACAATGATTCATGGAACCTT TAACTGTGCTATTAAAAGAAATTTTGACAGGAAGATTAAACAACATTAATTGTAACTAGAAGCCCTATAAAAAGAGCTAC CAAGGGTTGACATTCGAAATTTAGCACCAAAGTCTACATCAAATATAAGAGTCTAGAGAAACCATCCAAAAAACCTAACC AGATATGTATCCAGGCTTACATGCAATAATTTTAATAGTATGGGGAAAGAGTAAAAATATATTCCTATTTCCTAGAGTAT AAGTGACTTTTGGCAGAGTTAATCAGATAAATTTCCAAGAAATTCCAGAGAAATGTCATCAAGAAAGTAATTAAATGTGT TGAAATATTTCAACTCTACTTAAAATGTAGGAAGGGCAGAATATGTTCAGCAGCAATAGGTGGCTCCTCTTTGCGCAGTA GAGAAGTCAAGGCCTCCCCCCACAACATTCAATACTGAAAATATTTCTTTCTTTTTACTATAATTCTTACAGTATGTATA CATGACCTCCTCAAAAAGGTTAAATTGTTCTTAGAGACTCTAATATAATTATATTGGCCCATTGAATAATTTATTCTAGC TCCATGCCTGATAACATGTAACAAATTAGAAAGTAATCAAAGGGGTTTATAAAACGGAAGGTGAGACAAAAAATGCAATT CCAAGAACTTCTTATTAACATATTTGTGAAAGAACTTACAGCATCCTTAAATGCAGTAAATGCGGCTTCTGGTAGGTATG CATAAGTTGTACCACTGTCCAAGACAGTTCCATGTTTTCCATCAAAGACATTTGAGTTTAGAGGCAGTCGCTTCCCCGCA ACATGTATCTCCTTCAAATCAATATTGTAATAGGGACTGTCGCCACCCCGAAACTAGAGTAAATGTGTGAGATTAATAAA ATGCATTTGTTATGAAAATGCATTATCTCATATCCATATAATAAGAATTTTGAAATACACACCTGCGCACAGGATCTGAA TATGCAAAGACCATGTCTGTCGGGGGAGATATGCCACCAAGAACCATTGCACCCCCACCAACATCCATTCCACCATAGCA TAGTGAGAATGAATCACTAACTACATTTTTGTCAACCAGTTGATCCATGATACTAAGATCTCCACGGCCCAAACCCATGA TGCCATCAGCATGCTGACTATAAAGATCACCAGTCTCAACATTTTCACAGCCAAAAACAGCACGCTGTGGGGCAAGCTCA CTCTGATTTCCAAAGGATATGACATCCTCACCAAGGACACCACTGCTAGTACTCATTTCAGCATACTGTCTCTCATACAC ACATTGCATCCTGTCATCATCACAATTGCAATCCAATGTGCATTTGACAGGTTGATAGGTGCTTGACAAGTCTGGCTGGA ACTTTGGATCCTGTTAAAATAAATCGACACAAATCCAATTTACTTGAGATAAATGGACAAGTAACAATTTGCATATCCAT AGGTACAAAATTTTTATTTAAAATCTCTCATTTACATATCTTCTAGCATGAAATTGATGGTAACTTGGTAAGAAACAAAC AAAGTATAAGTAGTCTAATGCATTAATAGGGGTGGAAATAAAACAGGTTAGAGAGCAATACTGGTAAAGCACTTAGCAAC TGTGCTTGCTGGTTGCTACAAGTAAAAATAGAGTAGATATAGAAGAATGAAAATGAAGAAGAAATTATTAGGGTAAACTA TACTTCCATCACTTCTAATTTTAAAAAATTCAGTTCCTTCCCCCAAGAAAGAAATATGCTACATTAGTTCATTGTAATTA TACAAAAAGAAACCTCTTAGCAGTGGTAAACAATTATAAACGAGTTTTCTGAAGCCATTTTTTCCCTCTTTATGCAGCTA CCAGTGTCACCTACAACTAATTTTGAATGCCATATTATCAATTTTAGGATTTAATATAAAACGTAGCTTTGGAATTTCAC CAAAAGCAATCATTTCATCTTCTAAACTCCAAAAACAGGAAGCTTCTGATGGTATTGAGTGACATCGAAAGAGACAAACG TCAAGGAGGCTCAATCACGTTAAACTGAGCTAACGTAAAGCACATATAAAGCGAAAGACAATGTAATTTAAGCATTAATC CAGGGTGAGGAGTGTAATTCAACATATTATTTTTAGCATCTAACCTTATATCATGTCCAAACAACCCATCAAGTATCAAT CACCACTCCTCCATTTTACACCCTTCAACTTTTACTCTTACCCAACACATAATGGTGACACATCAATACTTCACGCATCA ACCGAAACCAAACTATGGTATATAATACCCTTATTTTCATAACCTCAGTCATCATATCCACAACCCAATAACAGCTCTTT AGCATAATTTTCATTTTCCATTTTCAAAATAGAGGTACATTAACAGAGTCAACGTCGATCCGTGTCCATCATAAAAGAGT ACAAAAGGATCAAGCTATGCACACAAACATCATTCCCCCCAAAATACACATATAGAGAGATACAATTGTACGCAAAAACA GAAAAAAAAAAAAAAAAAAAAATGAAAAGCAATGCAGCAATACCTGGTGCCTGCCACACTGTTCGCACGACGAGCACGGA ACATACGTAACAGTACTCCCCGTATCAACAATGAGAGCAAACATCTGCGGCGGAGTACCGATCCAAAGCCGCGTTGTGTA GTACCTGCACCAATCAATCAATTCCGCAATCAACCAACAAGAAAAACACAAAACAGATTCAAAATTGATTGGACAAAATG AAAAAGAGGAACGAATCGCGTGCATGAAGAGGTTGGTTTACCCGTTGAGGAGGAGATCATCGTGGAGTCTCATGCGAGCA TTAGGGTGGCGTTTGGACTCGGATCCATGGAGCTGGCGACGGGGATCGAGCTCTGATGTTGACGAATTGGAAGCGGAGAG GTATAATGGAAGGACCATTGCAGGAAGAGAGCCATGGTGGCGGTTTTGAAGGATCGCGGCGTCGCCGCCACGAAGGAGGT GAAAGAGGTGGAGGATCAGGGAGAGGGTGGAGATGAGGTGAGTTGACGCCCGCGCCATGAGGTGGTGACTCGGGCTGAGC GAACGAGTCCGGATCCGAGTTGAACGGATCGAAATGAGAGAGAAAAGGGAAGGCCGGTGGAGAGTCTCTCTCTGAATTGT AGAACGGAGGGAAGAAAGGACATCGTTTCCATGAAGGAAAGGTAAATAG
CDS sequence (LotjaGi4g1v0098300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCGTAACGGCGTGTTTTCACTCGCATTGATCTGCATCGTCGTCGCCGGCGTCGGAGGCCAGTCTCCCACGGCGGC GCCGACCACATCACCGGCTACTCCGTCAGCAACCACTCCAGTTTCCACACCAGTAGCTCCCGTTGCTTCCCCCAAACCCG CTGCCACAACACCCGCTGCATCTCCTTCAACAGCCACAGCTCCTGCTCCGGCGACGACCACACCTGTGACGCCAGTGACC TCACCGCCGCCGGCGGCTGTTCCGGTTGCCTCTCCACCACCTGCTGCTGTTCCAGTCAGCTCACCTCCAGCCAAATCTCC ACCTGCACCTGCTCCTACAGCTGTTCCCGTTGCAGCGCCTGTCACCACCCCCGAGGTTCCTGCTCCGGCTCCTAGCAAGA CGAAGAAGGACGCCGCACCAGCACCGTCACCGGTGGTTCCAGATTCACCTCCGGCTGGAGCTCCTGGACCTAGTGATGCG GTTTCTCCTGGTCCAGATGGTGCCGGCACCGCGAACGATGAGAGTGGAGCTGAAACCATGAGGAGCTTGAAGATGATGGG AGGCTTGGCTATGAGCTGGGTTGTTCTTGTTTTTATGTTCTAG
Protein sequence (LotjaGi4g1v0098300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRNGVFSLALICIVVAGVGGQSPTAAPTTSPATPSATTPVSTPVAPVASPKPAATTPAASPSTATAPAPATTTPVTPVT SPPPAAVPVASPPPAAVPVSSPPAKSPPAPAPTAVPVAAPVTTPEVPAPAPSKTKKDAAPAPSPVVPDSPPAGAPGPSDA VSPGPDGAGTANDESGAETMRSLKMMGGLAMSWVVLVFMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 1 | 200 | 200 | 2.3E-42 | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| MobiDBLite | 22 | 177 | 156 | - | – | |
| Phobius | 22 | 200 | 179 | - | – | |
| MobiDBLite | 23 | 45 | 23 | - | – | |
| PRINTS | 24 | 45 | 22 | 7.2E-10 | – | |
| PRINTS | 47 | 63 | 17 | 7.2E-10 | – | |
| MobiDBLite | 56 | 74 | 19 | - | – | |
| PRINTS | 67 | 84 | 18 | 7.2E-10 | – | |
| MobiDBLite | 75 | 127 | 53 | - | – | |
| PRINTS | 87 | 112 | 26 | 7.2E-10 | – | |
| MobiDBLite | 143 | 158 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0098300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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