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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0098800 |
| Transcript ID | LotjaGi4g1v0098800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Indole-3-acetic acid-amido synthetase GH3.3, putative; TAIR: AT2G14960.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|O82333|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1; TrEMBL-Plants: tr|V7CCK2|V7CCK2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0098800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:13366847..13369548) extracted from Lotus japonicus Gifu genome v1.2.
TCTAATTCCTCTCCTACTACAAAGTTACCAACTTACCATATCCTTCTACCTAAGCCACCGCATTCTTCTACCTTCCTTCT CTCCCTCTTCTTTTTTCCTGCGCTTAAAATCCCTGAAAAACCCAAAATCATGACCATCCTTGCTTCCGAGTTCTCCTCAT CCCCAAATGCACTTCCACCAAGCGATGACAAGAGCGCAAAGACTCTGCAGTTCATTGAAGACATGACCCGGAACACAGAC ACCGTCCAGCAGAAAGTCCTCGCCGAGATTCTCGCCCAAAACGCCAACACTGAGTACCTGAAACGCTTCCACCTCGACGG AGCCACCGACCGCGAAACGTTCAAATCCAAGCTCCCTGTTGTTTCTTACGACGATCTGAAGCCCTACATCGAACGCATTG CCAATGGTGACCGCTCTCCCATCTTGTGCTCTCACCCAATCTCTGAATTTCTCACCAGGTACACATTTATATAACATAAT TTAAACAAACACCTAATAATTACTATGAATTATTTGATTTTTTTTCATACATGTTAATATTGTGAATTGATTACAGTTCT GGAACATCAGCTGGTGAAAGAAAATTGATGCCGACGATAGCAGAAGAGTTGGACCGTCGCCAATTACTCTATAGCCTTCT GATGCCGGTGATGAACCAGTACGTAATTGCACTCATTTCTCTTGATCAATAATACAAAATCAACTTAACTGAATGAGTAA TTTAATTAATTGCATGATTTATCAGAAACGTGCCTGATTTGGACAAGGGGAAGGGTCTCTATTTCTTGTTCATCAAAGCT GAGACAAAGACCCCTGGTGGGTTAGTGGCGCGTCCTGTGCTCACCAGCTACTACAAAAGCGAGCATTTCAAGAACAGACC CTTCGACCCATACAACGTGTACACCAGCCCGAACGAGGCGATTCTCTGCATCGATTCATTTCAAAGCATGTACACGCAGA TGCTGTGCGGCCTCATCATGCGCCATGAGGTTCTCAGAGTGGGAGCCGTATTCGCCTCCGGCCTCCTCAGAGCTATCCGG TTTCTCCAGCTCAATTGGCACCAGTTAGCCCATGACATCTCCACCGGAACACTCAGCCCCAAAATCACAGAGCCTTCCAT CAGAGAATCTGTTGCTAAAATCCTGAAACCCAACACGGAGCTGTCGGGTTTCATAATCAACGAATGCTCTGATGGAAAAT GGGAAAGCATAATCAAAAGAATCTGGCCGAACACCAAGTACCTGGACGTGATTGTTACCGGTGCTATGGCCCAGTACATT CCGACCTTAGAGTATTACAGTGGAGGCCTACCCATGGCGTGTACCATGTACGCCTCATCTGAATGCTACTTCGGGCTGAA CCTCAATCCAATTTGCAAGCCCTCTGAGGTTTCCTACACCATCATGCCAAACATGGGCTACTTTGAATTCCTACCCCATG ATGAGGACTCATCAACTCATGACTCCACTGTCATGGTCGAACTTGCCGACGTTGAGATTGGCAAGTTCTACGAGCTTGTC ATCACTGTCTACTCCGGCCTTTGCCGCTACCGCGTCGGCGACATCCTCCAAGTCACCGGGTTCCACAACTCGGCACCACA GTTCCGCTTCGTTCGCCGGAAGAACGTGTTGCTGAGCATTGACTCGGACAAAACTGATGAATCAGAGCTGCAAAAAGCAA TAGAAAACGCCTCTGTACTATTGAAGGAGTTCAACACAACCGTGGTTGAGTACACCAGCTTCGCCGATACAAAATCGATT CCGGGGCATTACGTGATTTACTGGGAGCTTCTGATGAAGGACCTACACGCGCCGACGGATGAGGTGCTGAGCCGGTGCTG CTTAACCATGGAGGAGTCTTTTAACTCGGTTTATCGGCAGGGGAGAGTGGCGGACCAATCGATTGGACCATTGGAGATTC GGGTAGTGAAGAGTGGAACCTTTGAGGAGTTAATGGATTATGCAATTTCAAGAGGCGCGTCGATTAACCAGTACAAGGTG CCGAGGTGCGTGACATTCACGCCCATCACGGAGCTTCTCGACTCCAGGGTGGTGTCTGTTCATTTTAGCCATGGTGCACC GCATTGGACCCCAGAACGGCGTCATTGAAGGGTGGTTTACGATGACGTGAGAATAATAGTACATGCAGTCAGTCGTGCAC AAAATCTTGAAATAATAAAAGTGTGATGCATTGATGATCATGTAAATGTGAATGAAAGAAAAAAAAAAGGTTGTATGTTA ATGTCATGATTATCCATTATCACTACGTACCAGCCTTGAGACTTGTCTGTATCTGTGGGTGCGATCTGGTGTTGACTGTT ATGTAGCTTTCAACATTTTCTTCTTATCTTTCTGTTTCTGGGTCATGCTTTCTGTCAAACGGTTATGGTGTTTTAATTTG CTTTTGTGTTGATGAAGTTAGCTTAAATGGCTACACGGTGGGATTGTCATATATGCCTTTGTTTACCCATCTATGGAAGC CATGTGCACATGTTATTGTATCTTCTGTGATATTGTTCGTGTGGTATAGACTTTAAATTTCAACAAAGCGTCATTTACAC CGTCTAATGTCTGAAAAAAGGACAGAGAATAGAAGGATGGGAAAAAATAAAGAGTAGGTAAAAGATGTGATAGATTAAAA AAGAAGAAAGATAGATAAAAAGTAAAATAAAATAAAAATGAAGCAGCAAAATGAAGGATTAT
CDS sequence (LotjaGi4g1v0098800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCATCCTTGCTTCCGAGTTCTCCTCATCCCCAAATGCACTTCCACCAAGCGATGACAAGAGCGCAAAGACTCTGCA GTTCATTGAAGACATGACCCGGAACACAGACACCGTCCAGCAGAAAGTCCTCGCCGAGATTCTCGCCCAAAACGCCAACA CTGAGTACCTGAAACGCTTCCACCTCGACGGAGCCACCGACCGCGAAACGTTCAAATCCAAGCTCCCTGTTGTTTCTTAC GACGATCTGAAGCCCTACATCGAACGCATTGCCAATGGTGACCGCTCTCCCATCTTGTGCTCTCACCCAATCTCTGAATT TCTCACCAGTTCTGGAACATCAGCTGGTGAAAGAAAATTGATGCCGACGATAGCAGAAGAGTTGGACCGTCGCCAATTAC TCTATAGCCTTCTGATGCCGGTGATGAACCAAAACGTGCCTGATTTGGACAAGGGGAAGGGTCTCTATTTCTTGTTCATC AAAGCTGAGACAAAGACCCCTGGTGGGTTAGTGGCGCGTCCTGTGCTCACCAGCTACTACAAAAGCGAGCATTTCAAGAA CAGACCCTTCGACCCATACAACGTGTACACCAGCCCGAACGAGGCGATTCTCTGCATCGATTCATTTCAAAGCATGTACA CGCAGATGCTGTGCGGCCTCATCATGCGCCATGAGGTTCTCAGAGTGGGAGCCGTATTCGCCTCCGGCCTCCTCAGAGCT ATCCGGTTTCTCCAGCTCAATTGGCACCAGTTAGCCCATGACATCTCCACCGGAACACTCAGCCCCAAAATCACAGAGCC TTCCATCAGAGAATCTGTTGCTAAAATCCTGAAACCCAACACGGAGCTGTCGGGTTTCATAATCAACGAATGCTCTGATG GAAAATGGGAAAGCATAATCAAAAGAATCTGGCCGAACACCAAGTACCTGGACGTGATTGTTACCGGTGCTATGGCCCAG TACATTCCGACCTTAGAGTATTACAGTGGAGGCCTACCCATGGCGTGTACCATGTACGCCTCATCTGAATGCTACTTCGG GCTGAACCTCAATCCAATTTGCAAGCCCTCTGAGGTTTCCTACACCATCATGCCAAACATGGGCTACTTTGAATTCCTAC CCCATGATGAGGACTCATCAACTCATGACTCCACTGTCATGGTCGAACTTGCCGACGTTGAGATTGGCAAGTTCTACGAG CTTGTCATCACTGTCTACTCCGGCCTTTGCCGCTACCGCGTCGGCGACATCCTCCAAGTCACCGGGTTCCACAACTCGGC ACCACAGTTCCGCTTCGTTCGCCGGAAGAACGTGTTGCTGAGCATTGACTCGGACAAAACTGATGAATCAGAGCTGCAAA AAGCAATAGAAAACGCCTCTGTACTATTGAAGGAGTTCAACACAACCGTGGTTGAGTACACCAGCTTCGCCGATACAAAA TCGATTCCGGGGCATTACGTGATTTACTGGGAGCTTCTGATGAAGGACCTACACGCGCCGACGGATGAGGTGCTGAGCCG GTGCTGCTTAACCATGGAGGAGTCTTTTAACTCGGTTTATCGGCAGGGGAGAGTGGCGGACCAATCGATTGGACCATTGG AGATTCGGGTAGTGAAGAGTGGAACCTTTGAGGAGTTAATGGATTATGCAATTTCAAGAGGCGCGTCGATTAACCAGTAC AAGGTGCCGAGGTGCGTGACATTCACGCCCATCACGGAGCTTCTCGACTCCAGGGTGGTGTCTGTTCATTTTAGCCATGG TGCACCGCATTGGACCCCAGAACGGCGTCATTGA
Protein sequence (LotjaGi4g1v0098800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTILASEFSSSPNALPPSDDKSAKTLQFIEDMTRNTDTVQQKVLAEILAQNANTEYLKRFHLDGATDRETFKSKLPVVSY DDLKPYIERIANGDRSPILCSHPISEFLTSSGTSAGERKLMPTIAEELDRRQLLYSLLMPVMNQNVPDLDKGKGLYFLFI KAETKTPGGLVARPVLTSYYKSEHFKNRPFDPYNVYTSPNEAILCIDSFQSMYTQMLCGLIMRHEVLRVGAVFASGLLRA IRFLQLNWHQLAHDISTGTLSPKITEPSIRESVAKILKPNTELSGFIINECSDGKWESIIKRIWPNTKYLDVIVTGAMAQ YIPTLEYYSGGLPMACTMYASSECYFGLNLNPICKPSEVSYTIMPNMGYFEFLPHDEDSSTHDSTVMVELADVEIGKFYE LVITVYSGLCRYRVGDILQVTGFHNSAPQFRFVRRKNVLLSIDSDKTDESELQKAIENASVLLKEFNTTVVEYTSFADTK SIPGHYVIYWELLMKDLHAPTDEVLSRCCLTMEESFNSVYRQGRVADQSIGPLEIRVVKSGTFEELMDYAISRGASINQY KVPRCVTFTPITELLDSRVVSVHFSHGAPHWTPERRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 594 | 582 | 0.0 | – | |
| PANTHER | 13 | 594 | 582 | 0.0 | ||
| Pfam | 29 | 567 | 539 | 3.0E-204 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0098800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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