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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0102700 |
| Transcript ID | LotjaGi4g1v0102700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP2-like ethylene-responsive transcription factor; TAIR: AT4G36920.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|P47927|AP2_ARATH Floral homeotic protein APETALA 2; TrEMBL-Plants: tr|V7CCN3|V7CCN3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0102700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:14211400..14216407) extracted from Lotus japonicus Gifu genome v1.2.
GATGGGAATGATTTAACGATTAGAAGCTAAAGAAAGGTGCTAATTTTGAGTAATTAACCTTTCTTGAATGCCTCCTTGCG CTGTCTATTTTGTAATTAGAAGAGAGAGAAAGACAAGGCTTGTTCATCAGATGATGCTTTTCGATTTGGTTAACGTGGGA AAGTTGTTTAAGAAAGAGATGGTTCTTTATTTCCCAATTTTCCCCCTCCCCCAACTTGTTCAACATTTATCTCTCTGGCT CTGACTCTCTCTTTAATAAATAAATAGGTGAAAATTAAATAATTCTATTACTACTTTAGAAAAACCAGAAATAGAAGTAT TTGTTTTTTTATAGTATAGTAGTGTGATGAAATTATTATTATTATTATTATGATGAGTCATTGAAGCAAGTGGTTAGAAA AAGAGAGAGAGAGAGAAAGAGAATATGAAGAGTGATGAGGGGTGGTGTTAAGAAGAAGGTGAGATGCTTTCGGCTAAGCT TGCTCATTCTGGCCTCGTCTATGCTGTATTGGGCAGTGAAGGAATACAAAGATCTTTGAACTTCTCTTTTACTACATTTT TGCAACACCTACCTCTCTCTCTCTCTCTTCTTCACTGGTCCTAGGTTTGATTTTTCTTTCTTTCTTTCTTTCTCTGATTT TCCAACACTTCAACATCATCCCTTGTTAACCAACTAGCTCCCTCATCTGAGTACTACTCTTTTTTCGCATCAAACCCCAT TATTTTATTCTCAATTTGAGAGAAACAAAGACATATCCCTCGAAACTCCCAAAACAAAAAACAAAACAGAGAAGAAAGTT CTGGTTTTATTGATGTGAGAGTGGTTTCAGGAATCTGGGTTGGTTGGTTTGTTTATTGTTTGTCTCCTTAATGCTCTTGT GCTGCTTCAACTAGTCTTTCAATTCTTAGCTAGAATCTTTGAGGGGCTAGTTGAAGCATAGAAGAATGTGGGATCTCAAT GACTCACCCGATCAGAGGAAGCATGAGGAATCAGAAGGGTGTTCTTCTCTCAAAACATCAACCATCGATGGCGGAGACGA TGAGAAAGGGAAGAGGGTCGATGGATCTGTTTCCAATTCAAGTTCTTCTGCGGTGGTCATCGAGGATGGATCAGAAGAAG ATGAACCAGAAGAAGGTGAGAGGGAAGGTACAAAAGCAGCGATGATGATGATGAAGAAGAGAAACAGCAGCAAGATATTC GGGTTCTCTGTCACCGGAGAAGGTGAAGAAGAGTCGTTTTTGTTGGACAGTGAAAACCCGCCGGTGACTCATCAATTTTT CCCGGTGGGGGAACATGAAAAGGCGGTTGTATCAGGTGGTGGCGGCGGCGGTGGTGGAGGCTCTTCCTTTCCTCGTGCTC ACTGGGTGGGTGTGAAATTTTGCCAATCGGAAGCGCCGGGTGCCGGAAAATCAGTGGAGGTTTCGCAGCCGATGAAGAAG AGTAGAAGAGGACCAAGGTCTAGAAGCTCTCAGTATAGAGGAGTCACTTTTTACAGAAGAACAGGTCGATGGGAGTCACA CATATGGTCAGTTTTCATTTCTTTTGTTTGATTCGGTAGGAAGAGTTCTGCCGCTCATACTGGTCCTACCCGACTCGAAC AGTATTAACCTGTTGTTAAAAAAATTGATCCTGATGGTACTGATTGTGTCCATGATATTGCAGGGATTGTGGAAAGCAAG TGTATCTTGGTAAGATAATATGATGATAAGAATAATTGTGAGTGTGTGTGTGTGTGGTATGGGTGTGGCAGTTATTTTTC CAAATATCTTGTTTTAAGTAGCTAAAACATGTTTTTTTTCTTCCTTGTTTTGTGTTTTTGTCTTTGACATTATTTGGTTG AGACAAGTGTGTGTGTTTTGTGGGGAAATTGTTTTTGTGGTGATTGATTTGTCTGGGTAAATTTGTCTAGGTGGATTTGA CACAGCACATGCAGCTGCTCGGTGAGCACTTGCTCATTCCCTTCCTCTAGTTTATACCATGCTTGTAACTAAATTTAACT TTTTTCTTTATCTTTGAACAAAAGTTGAATGTAAAATTGAAAATAAAATTTCATGTTTTCACATTCATCTCTTTTTGCAG TGCCTATGATAGAGCTGCGATTAAGTTCAGAGGAGTAGAAGCAGACATTAACTTCAACATAGAGGACTATGAAGAAGACT TGAAGCAGGTAATTAATTTGGTTATGTATATTTTATTTTATTCTATGAATGCATGTCATTTATGATTTATCTTATCTTGA ATCATACACTTTATCTTCTCTAGGTACTAACTTTATATACCTTGAATTATTCTATTGATTTGGTTCTATACCATGTTACT AGATGACCAATCTGACCAAGGAAGAGTTCGTGCACGTACTTCGCCGACAAAGCACTGGGTTTCCTAGAGGAAGCTCCAAA TATAGAGGTGTAACATTGCACAAGTGTGGAAGATGGGAAGCACGAATGGGCCAGTTTTTAGGGAAAAAGTAGGCCAAATT TTTCTTTGTCCTTCTCATATTTTTTCCTTTTGGGATTTTCTGCTCATTCATTCAGTTCTTAATTTCTTACATGAAACAAG AATGTTTAATTAATGAATATGGTTCACTATATAGGTACGTTTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGG TAATCTATCTATCTGATTTGCTTACGTTATCAATTATTTCATTCCCTTCTACCAGGAGTATTAGATTGCCCATCTTCCAA ATAACATAAATGACTTTAGGGTTTTAAATTTTATTTGCTCATTTTTTTTACTATAGGGCTTATGACAAAGCAGCAATAAA ATGCAATGGCAAAGAGGCCGTCACAAATTTTGATCCCAGCATCTATGAGAATGAGCTTAATTCTGGTAATCAAACGACAC CAACAATTATATATAGATTTTTTTTGATAATTAATACAAATATTTAGTTTTATTATTCACATTTTGACTTGTAATTTTGG CCAGCAGAATCCTCAGGTAACGCTCCTAATGAACAACAACACAATCTGGATTTAAGTTTGGGCAATTCGGGTTCAAAGCC TGGTAGTAGTCAAGTGTTTGGGAATCACACAACAAATTCTGCAAATCATGAGCAGCACTTGCCATCTCAATCTAATTGGC AGAATGGGGGGAACAAGCCCAAGGTTCATATTAATATTAATTATATCAAGATTTTTGTTTATATTGTAGCTTCATTGCTT CAATTTCCTAATATTCTATAGTTTTTTCTTGGTTATTGATGATTCATTCAGCTCATGAGTATACTACCGAAGCCTTTGCA TAGAAGCAACAAGGAAGTGCATGGGGAGAGTGAAGCACTGAGGATGCTGAGTCAAACTCACCTCCATTCCTCAGCCTCTA ATGAAATGCAAAGATATGTCCCCTACAGATCTTCTGGAGAGTCTCCAATGTTCCACAATTTTGCACATATTCACCCTCCA AATTTTCATGTGGGTACAACTCTCAAATCAATTCATCTATTCAGCACATTAATTAATATCAATTTCTCCTTTTCCGGAAT CAATTTTATTAGCACATGAAGCTACTTGAATGAGATGCTTCTCATAATTAATTGAGTTAAAAATTAATCATACAAGGATT TCTTAATACTCCGTATACACTAAATAAATGAGAGAAAATTAAGAAGCACTCATAATTTTTAATTTTATGAAAGTGACAAT TTTATAATGGACCATGTTCAAAACTCGTGCAGCCATGACTACTAAGCTCTGAATGTAGTGAATTTAGGAAAATTCAACTG TAGGGAAATTGGGAAACCGAATCCCATATTTTACTACAATTATGTTTGTTATATACAAAAACTGAATTGGCAAAAACTAT TTTTATTTGTAAACTAAATTTTTCTTTAGGCTTATGAAAACAAGTTTTTACATGTGTATCAGTGTATTTAATAATTGTTT TTGTAAATGTAGTTTCCCAGCAGCAGCTATGGAGGTCGAGTTGGAAGTGATCTATCCTTATCATCGAGCGATCATCAACA TTTACAACAGTGGCAATCCGGACCTCCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCGCAGATTATAA GACCCTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACACTCAAGAGACCATCCTAATGTACAATTTTTTCT GCCCCCGCCAGTAATCACATTCAAGTTAAATAATCTTTCATATAATATATAAATATTTATATATCTTCTTTTGCTCTCTT TAATTTCTTTCTTAGATGCAGTGTTAATTATATATGCTATAATGTTATTAGGAAAATGGCCCATAGATATGACCAAAACT TTACTATTGAGGTGAAAAATAAAAAGAATCCCAAATTGGGAACTTGGTCCGAGTCAGTCAAACTAACAAACGGACGAAAT CTTTAACTAGATATTCTGGGATCTGACTAAAATTTTCTGATCTTATGTAACTCTGATTTATTGCTTTTCTGCGTTACGGG TATTTATGACAGCACCTATTCGTTTCTTAATTTGGGATGAATTGCAATCACACACATGCTTGTCAATTTGTTCCTTGTTT CACTTTGGTCTTGAAAAACTTTGCCCACGAAAAGATGCTACCAATTGTTCCTTAGAAGGGAAAATGCAACATTGTTTAAA AACTAAATGAGAATTTTTATGTTTTATATATGAAAATGATGTAGAAGAAAATTAGCTATAGGCTTAGGAGTTAGGAGTAG CTGCTGCTAGCTATAGGGTGGGAAATATGAAAAATCAGAGATGCAAAATGGGTTTATTTTCTGGTGTGTCTTGGAAATAT CATCGGATGGTGATGAATAGTCTCCATCAACGGTGTCCTTTGAATCAGTTCTCTCGGCCAAAAGCAGTCAGACAAAGCCA TTATGATGAGAGGGACCTATCAATTTTCGTCTAAAGCTTCAAAAGGACACTGATACATGGAGTGAGAGAGAGAAAAGGAA GCCACCAAAAGGGTGTAATGAGTTTCGTTTGGTTTAAAGCTTTAACCC
CDS sequence (LotjaGi4g1v0102700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGATCTCAATGACTCACCCGATCAGAGGAAGCATGAGGAATCAGAAGGGTGTTCTTCTCTCAAAACATCAACCAT CGATGGCGGAGACGATGAGAAAGGGAAGAGGGTCGATGGATCTGTTTCCAATTCAAGTTCTTCTGCGGTGGTCATCGAGG ATGGATCAGAAGAAGATGAACCAGAAGAAGGTGAGAGGGAAGGTACAAAAGCAGCGATGATGATGATGAAGAAGAGAAAC AGCAGCAAGATATTCGGGTTCTCTGTCACCGGAGAAGGTGAAGAAGAGTCGTTTTTGTTGGACAGTGAAAACCCGCCGGT GACTCATCAATTTTTCCCGGTGGGGGAACATGAAAAGGCGGTTGTATCAGGTGGTGGCGGCGGCGGTGGTGGAGGCTCTT CCTTTCCTCGTGCTCACTGGGTGGGTGTGAAATTTTGCCAATCGGAAGCGCCGGGTGCCGGAAAATCAGTGGAGGTTTCG CAGCCGATGAAGAAGAGTAGAAGAGGACCAAGGTCTAGAAGCTCTCAGTATAGAGGAGTCACTTTTTACAGAAGAACAGG TCGATGGGAGTCACACATATGGGATTGTGGAAAGCAAGTGTATCTTGGTGGATTTGACACAGCACATGCAGCTGCTCGTG CCTATGATAGAGCTGCGATTAAGTTCAGAGGAGTAGAAGCAGACATTAACTTCAACATAGAGGACTATGAAGAAGACTTG AAGCAGATGACCAATCTGACCAAGGAAGAGTTCGTGCACGTACTTCGCCGACAAAGCACTGGGTTTCCTAGAGGAAGCTC CAAATATAGAGGTGTAACATTGCACAAGTGTGGAAGATGGGAAGCACGAATGGGCCAGTTTTTAGGGAAAAAGTACGTTT ATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGGGCTTATGACAAAGCAGCAATAAAATGCAATGGCAAAGAGGCC GTCACAAATTTTGATCCCAGCATCTATGAGAATGAGCTTAATTCTGAATCCTCAGGTAACGCTCCTAATGAACAACAACA CAATCTGGATTTAAGTTTGGGCAATTCGGGTTCAAAGCCTGGTAGTAGTCAAGTGTTTGGGAATCACACAACAAATTCTG CAAATCATGAGCAGCACTTGCCATCTCAATCTAATTGGCAGAATGGGGGGAACAAGCCCAAGCTCATGAGTATACTACCG AAGCCTTTGCATAGAAGCAACAAGGAAGTGCATGGGGAGAGTGAAGCACTGAGGATGCTGAGTCAAACTCACCTCCATTC CTCAGCCTCTAATGAAATGCAAAGATATGTCCCCTACAGATCTTCTGGAGAGTCTCCAATGTTCCACAATTTTGCACATA TTCACCCTCCAAATTTTCATTTTCCCAGCAGCAGCTATGGAGGTCGAGTTGGAAGTGATCTATCCTTATCATCGAGCGAT CATCAACATTTACAACAGTGGCAATCCGGACCTCCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCGCA GATTATAAGACCCTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACACTCAAGAGACCATCCTAA
Protein sequence (LotjaGi4g1v0102700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWDLNDSPDQRKHEESEGCSSLKTSTIDGGDDEKGKRVDGSVSNSSSSAVVIEDGSEEDEPEEGEREGTKAAMMMMKKRN SSKIFGFSVTGEGEEESFLLDSENPPVTHQFFPVGEHEKAVVSGGGGGGGGGSSFPRAHWVGVKFCQSEAPGAGKSVEVS QPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDL KQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEA VTNFDPSIYENELNSESSGNAPNEQQHNLDLSLGNSGSKPGSSQVFGNHTTNSANHEQHLPSQSNWQNGGNKPKLMSILP KPLHRSNKEVHGESEALRMLSQTHLHSSASNEMQRYVPYRSSGESPMFHNFAHIHPPNFHFPSSSYGGRVGSDLSLSSSD HQHLQQWQSGPPHYLATAAASSGFPPQIIRPSSSQGWLQKNGFHTLKRPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| MobiDBLite | 1 | 69 | 69 | - | – | |
| PANTHER | 2 | 526 | 525 | 8.1E-192 | – | |
| PANTHER | 2 | 526 | 525 | 8.1E-192 | – | |
| MobiDBLite | 152 | 176 | 25 | - | – | |
| Pfam | 175 | 224 | 50 | 8.3E-9 | ||
| SUPERFAMILY | 175 | 233 | 59 | 9.81E-16 | ||
| Gene3D | 175 | 234 | 60 | 4.7E-19 | ||
| SMART | 176 | 238 | 63 | 7.9E-32 | ||
| ProSiteProfiles | 176 | 232 | 57 | 17.596 | ||
| CDD | 176 | 233 | 58 | 5.61978E-12 | ||
| SUPERFAMILY | 267 | 327 | 61 | 6.28E-17 | ||
| CDD | 267 | 327 | 61 | 9.11606E-26 | ||
| Pfam | 267 | 317 | 51 | 2.3E-9 | ||
| Gene3D | 267 | 327 | 61 | 2.8E-18 | ||
| SMART | 268 | 331 | 64 | 4.2E-31 | ||
| ProSiteProfiles | 268 | 325 | 58 | 15.461 | ||
| PRINTS | 269 | 280 | 12 | 5.2E-6 | ||
| PRINTS | 307 | 327 | 21 | 5.2E-6 | ||
| MobiDBLite | 331 | 398 | 68 | - | – | |
| MobiDBLite | 331 | 392 | 62 | - | – | |
| MobiDBLite | 511 | 530 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0102700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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