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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0104400 |
| Transcript ID | LotjaGi4g1v0104400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0104400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:14542187..14546426) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAAATAGTAAAATACCCTCATTTTGGGTTATAGTGTGGGACACTCAATGGGGATGACAAAGCTATCTCTCTTTTTG TTTTGGGTCAAGGAGTTGGACTTGGAACCTTAGATGTTTTGATAATAAGGCTCAATACTTAACCTTCAGATCCTAGTAGC TTGGGCAACTTCTAAATTGGGGCCCAAAAACTGAAACCATCACTTACTCACCTAGTCCAATCACATCAAATCATCTGGAA AAGCAACATTTCTCCTGCAACAATTCTCAATCAGTAACTCAATTCATCATAGCATCATCATATTAGTTAGGGTTTTGAAA AACCAGTACCACAACAAATTCAAAACCCTAAATTCCCAAAACCCATCACACACTGTAAAATCCACTCCACTGATTTGCAA ATCCACATTCATCTACCATGGAAGACAGGGTCACCAACTTACCAGACGAACTCCTCTGCCACATTCTCTCTTTCCTCCCA ACCAAAGAAGCCATAGCCACAACCATTCTCTCCAAACGATGGACCAATCTATGGCGTTCAGTCTCCACTCTCGACTTCAA CGATTCCACCTATGGCGGAGACAAACATTCCCGCTTCATCCAATCAGTCTACGCAGTTCTCCTCTCCCGAAATCTCAACC AACCCATCAAGAAATTCCGACTTCGCTGTTCCATTCGACCCTCCTTGCTCGACTCTGACTATGCCAGCTTCTGGGTCGAC GCGGTTTTGCAACGTCGAGCTGAGCACATTGATATCTCACTCCCTTTTGTCTCACCCATTAGAGTTCACTCCAACTTGTG TTTCTTCAATTGTAGAACTCTTGTGGTTCTCAAGTTGAAGGGGATAGGGTTGAATTTGAAGCATTTTTCCTCTGTTGTTG AACTGCCTTTGGTTAAAGTTCTTCATATGCAAACTGTGCTTCTTCCAGATTGTGGAAGTTTCGCCGACATTCTTACCGGA TGTCCGGTTCTTGAGGATTTGAAAGCAAGGAATTTATATTTTACAAAATATGACAATGAGAGGGAGTTTAATATTTTACC TAAGTTGGTCGGAGCAGAAATTTCATGGGAACCTTTGGATATTTTTATGGTGAAATTGGTTAACAATGTCAATTTTTTGC GAATACGTGATGTATGTTGGATAATTGGATTGCCCATTATTCTCTTTTTATTCGTAAACTAAATGGGTGATGTTTGATTT CTTGTTATTTTAACTCATGCAGATTGATTTTAGACTCCTTCCTTATGGTGGTGAAGATATAGATATGTTTCACAATTTAA CCCGTGTTGAACTTGTCTATACCGGTCATACTCATGATTGGCTTGATGTGGTGGAATTTCTCAAGTATTGCCCCAAGCTT CAAGTTCTTGTCATTAAACAGGTTTGCTTAGTTAGAGGCTTAGGATGATTTCTATTTTTTCTGTCACATGTTTTCATTTA TTTATTTGATTTATGTTCATTGTTAACAGCCACAGGTTGATGGCTACTACACTGTTGGTGAACTCAGAGGAAACGATTGG CAATACCCATCATCTGTTCCTAAATGCATTCTATTTCACCTTAAAGAATGCTATCTAAATAATTATAGAGGCACAAAAGG TGAGTTTAAGTTTGCAAGATATATTATGCGGAATGGAAGATTTTTAAAGAAGATGACAATATGCAAGTGCACTGCTGTGA AGCAACTAGGAAAGCCTAACGATATTAAAAAATTATTCTCATGCTCGGCGCGCTCTGCAACTTGTAAACTTTACTTTAAA ATTTAAATGATAACAAACTAGCTACTTAAAAGGATGTGGACCTTGTCTTAGTTTTGAAATTAGTTGAACTGTCTCTTTAT TGATAATTACTTGAAAATTTGAGATATACTGCTCAAGTGTGAGACAATTGTATTGTATGCCTGATCTTGTGCAAACCTCC ATGATTTCTCTCGAACAAACACAGTCGCTCACACAAAAGTCAAACATTTAGTTGTTTGTTCATAAATATCTCTAGTCTTT TGATGGTTTTGATTTTCCATTATTGTGTATCAATGATGTTGTAGCAGAATTTGGTCAGAAATTAGTTTTCTTACATAAAA TTATTTTATTTTTTTGATAAGAAAAGGTTATACTTCTTATACGATATGCACGATGTGGATCACTGAAATCTGCATCATGA AGCAGAAGTTTCATAGCAAGGTTGAATCCTAACAGCTTATCAACCACATAATTGACGGTTGTGCGACCAGCTTTTATGTT GCTTGGTCACTGAACAACCTAGTGTAAGAGGGAAGGAGTAATGGTTATGCAGCTATTGCATTTTTTTGGCGAAATTAAAT GGTGTTAGTCTGTCCTTCATTTGAATGGCTGAGGGAAAAGTATGTATTTCACTCTCAGTGGTATCTTGAATTTTATTTAA ACTTTTGTGTTAAAGCTGTTTTTTGGCTATTGTTTCTTTTATTTTTGGTAGGATATTGACTTGTTTTGTTAATGAGATCT TAGGCTAGGTTAGTTTCTTCTCACCTAATTGAGTAGTTGGAATGTTGGTAGGCTTGTAAGGAAGTCCACTTTGGTGGTTT TCAGGCCTTCTGGATTAGTGTTTGGTTGCTGGTAAAAGGATACACCCTTGAATTTGAGTCATTGGAATGTTGAAATTGTT TCCCTTGTTTGCTAGTGCTATAGATATTAATCAGATAATGCTGATGTAAATGACTTAATTTATAATATTTTTTCACGTCT CCCATTTGATTGAGCACATTAGGAGTCTACACCTTTGAGTATATTTACAAAACTATCATTTTAACTTGCTAACGTGCTCC TTCTAAGAGGTGAAAAGCTAGTGGGACAAACCCCTAAAAATAACAAACAAGCGCAAACACCCCAAAGCTCATTCTAGGAG TGCAGGACCTTGCTGATGTGCTGTCAATACCTGATGTTTGCTTGAACAGGCAAATGTCTTGCTCTCATTCTGTACCAAGT TCTGTTTGGTCTTTGTTCAGAATATACAAAGTTAAATATTGATTTAAGGTAATCTGATATTTTAATTAGTAGGACAATGA TTTTGGCTCTTTTAAATTAGAGTAACTTTGCTTATTGGCACAACTAATGAAGATGTTCTAAATGGTATATTCTAGAGTTT CTTCCCCATTTGCTATGATTTGAAGCAGGTTTTGTAGGTTCTATAATGTCCTCAATTATTTCTAAGATACACTGGCTGAC TGACTAGTTGGAACCAAGACCTATAAGATCTGATACAGGGCTAGATTCTTCTCATCTAATTTGAATATCAGGTATAGTAA AATCGTTTAGATTGTTTGGCTTATGTCAATGGAGTAAAAGTATAACAAGCTGAAGAAATTTGAAATATTTTTGAGTTAGG ATGTTCTATCTTGTCATTTGATTTTTTCTTGAGATTGATAAATTTTTTCGGGTATTCTTGACCATTGAGCTTGAGCGAGT CTAGGTGCAAGCAAACTTTGTTCGAATTTCTCTGTTATTGTATGTCAATTACATGAGATATGTCTGACTGTTCTGGATTA AGGCCCCGTTTGGAAACATAGCTTAATTAAGCGCTTATGGTCATAAGCACTTATGTCATAAGCGCTTATTCATAAGCTAT TTTAAAATTTTTATTGAAATAAATTGAAAATAAGATATACATAAGAATAAGTTTTTTTTCATAAGCTATCATGAGTAGCT TATGAAAATAAGCTCAAAACAGCTTATGGTAGGCCATAAGTTGTTTGCATAAGCTCTCCCAAACACTGGCATAAGAGCTT ATGCTATCAGATAAGCTCAAATAAGCTCTTCCAAATGGGGCCTAAATTTATGCAATGTGGTTTCTTTTTGCACCACCTTA TTTGTTGTCATGCTTCCTTTCTTTTTATGCAGGACTCTGTTTTGTCCTTTTTTAAACATCAATTACAAGGGCTTTATTTT TATTATGCTAAAGTGATCTTCCAGTTACGATAGCCATTTTTTTGGGTGTGTTTCTGTTACACATGATGCAGTTATTTTAA TTATGCTAAAGTAATCTATTAGGATAAATTTTAATTATACTGAAAATTATCAAACACATTAAATGGTTATAGAGGCACAA TAGGTGAGTTGAGTTTCAATTTGCAAGATTTATTATGCTTGACAAAATCCAGTGGCATTGCCAGAATGGGTAAATTTTCT TTTTCTCTTCTCTATTCTTAATGTCTCCCATCCCTAGCTCCTATCCCTCCTAAGGGGTATACCGATACCATTTGAGTACA
CDS sequence (LotjaGi4g1v0104400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGACAGGGTCACCAACTTACCAGACGAACTCCTCTGCCACATTCTCTCTTTCCTCCCAACCAAAGAAGCCATAGC CACAACCATTCTCTCCAAACGATGGACCAATCTATGGCGTTCAGTCTCCACTCTCGACTTCAACGATTCCACCTATGGCG GAGACAAACATTCCCGCTTCATCCAATCAGTCTACGCAGTTCTCCTCTCCCGAAATCTCAACCAACCCATCAAGAAATTC CGACTTCGCTGTTCCATTCGACCCTCCTTGCTCGACTCTGACTATGCCAGCTTCTGGGTCGACGCGGTTTTGCAACGTCG AGCTGAGCACATTGATATCTCACTCCCTTTTGTCTCACCCATTAGAGTTCACTCCAACTTGTGTTTCTTCAATTGTAGAA CTCTTGTGGTTCTCAAGTTGAAGGGGATAGGGTTGAATTTGAAGCATTTTTCCTCTGTTGTTGAACTGCCTTTGGTTAAA GTTCTTCATATGCAAACTGTGCTTCTTCCAGATTGTGGAAGTTTCGCCGACATTCTTACCGGATGTCCGGTTCTTGAGGA TTTGAAAGCAAGGAATTTATATTTTACAAAATATGACAATGAGAGGGAGTTTAATATTTTACCTAAGTTGGTCGGAGCAG AAATTTCATGGGAACCTTTGGATATTTTTATGGTGAAATTGGTTAACAATGTCAATTTTTTGCGAATACGTGATATTGAT TTTAGACTCCTTCCTTATGGTGGTGAAGATATAGATATGTTTCACAATTTAACCCGTGTTGAACTTGTCTATACCGGTCA TACTCATGATTGGCTTGATGTGGTGGAATTTCTCAAGTATTGCCCCAAGCTTCAAGTTCTTGTCATTAAACAGCCACAGG TTGATGGCTACTACACTGTTGGTGAACTCAGAGGAAACGATTGGCAATACCCATCATCTGTTCCTAAATGCATTCTATTT CACCTTAAAGAATGCTATCTAAATAATTATAGAGGCACAAAAGGTGAGTTTAAGTTTGCAAGATATATTATGCGGAATGG AAGATTTTTAAAGAAGATGACAATATGCAAGTGCACTGCTGTGAAGCAACTAGGAAAGCCTAACGATATTAAAAAATTAT TCTCATGCTCGGCGCGCTCTGCAACTTGTAAACTTTACTTTAAAATTTAA
Protein sequence (LotjaGi4g1v0104400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDRVTNLPDELLCHILSFLPTKEAIATTILSKRWTNLWRSVSTLDFNDSTYGGDKHSRFIQSVYAVLLSRNLNQPIKKF RLRCSIRPSLLDSDYASFWVDAVLQRRAEHIDISLPFVSPIRVHSNLCFFNCRTLVVLKLKGIGLNLKHFSSVVELPLVK VLHMQTVLLPDCGSFADILTGCPVLEDLKARNLYFTKYDNEREFNILPKLVGAEISWEPLDIFMVKLVNNVNFLRIRDID FRLLPYGGEDIDMFHNLTRVELVYTGHTHDWLDVVEFLKYCPKLQVLVIKQPQVDGYYTVGELRGNDWQYPSSVPKCILF HLKECYLNNYRGTKGEFKFARYIMRNGRFLKKMTICKCTAVKQLGKPNDIKKLFSCSARSATCKLYFKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 385 | 384 | 3.9E-69 | – | |
| ProSiteProfiles | 2 | 50 | 49 | 10.637 | ||
| PANTHER | 2 | 385 | 384 | 3.9E-69 | – | |
| Gene3D | 3 | 291 | 289 | 3.0E-24 | ||
| SUPERFAMILY | 3 | 45 | 43 | 1.05E-12 | ||
| Pfam | 7 | 42 | 36 | 5.8E-7 | ||
| SMART | 8 | 49 | 42 | 3.2E-4 | ||
| SUPERFAMILY | 125 | 291 | 167 | 6.28E-9 | – | |
| Pfam | 311 | 355 | 45 | 5.9E-17 | ||
| SMART | 316 | 388 | 73 | 9.9E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0104400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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