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LotjaGi4g1v0104800.3

Overview

Field Value
Gene ID LotjaGi4g1v0104800
Transcript ID LotjaGi4g1v0104800.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description RNA-binding protein, putative; TAIR: AT4G36960.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|I1J971|I1J971_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0104800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:14589048..14598056) extracted from Lotus japonicus Gifu genome v1.2.

CCGGTTCATTTCTAAACCGGGTCCGTTGATTTCCCCTGAGAAGCCCCAAATTGAACTGACACGAGAATAGACAAGGTACG GAGCGAGCTAGCGAGAGAGAGAAAGACATTGCCAGATCTCTGATTTAGGGTTTCGATTTTCCCCAAATTCCCAAGGTCAG TGAGCGCGTAATCCACTGAATTTCTCGCAATTCCTATTTTTCTTCGTTTAATTTTATTTTTTGAGCTGTAATTGGAACGC AACGCAGTTGAATTTGAAGCCCCAAAAAGCTCAATTTTCATCAATGGCGACAAAAATTGTGTGTGAGAAAGAAATGTTGT TGTTATGTGCAGGGAGCGAAGAGTGTGTGAGATTTAGAGAGAGTGGTGTGAGAACGCTGAGTGCTCTTCTGCGAGATTCC CAAAGACGAGGTCGAGAGATTTTGAGTTTTCTTTTTCTTTTTGTTGCTGCTGTTTCTTCAAATTTTAGGGTTTTCAGATT TCTATTGTGTTCAAGTTTCCCATGGAGCAAAGGAAGCTTGTGGTTAGTTATTTATTTATTCCTTTTGCATTTTATATTGA TTTGCTTTTCAATTGCAAAAGTTCAGATTCTTAGCATCTTTTTAATTTGAATTTAGCTTATTTGTTCTCATAAAAATTGC ATTTTAGGTTTTGGGTATCCCATGGGAAGTGGATACTGATGGCTTGAAAGAATATATGAGCAAATTTGGTGAGCTGGAAG ATTGTATTGTTATGAAGGTAAGCCTCTTTCCGTTTGTCGATTATTGATATTACATTTTTGATTTATGATTGTCTACCATA TCATGATGCTAAATTTGTTGAATGTTTCTATTACATTCTTCATCGTTCATTTGTATTTGTGTTACGTTTGAAGATAATAA GTGATATGCTTTACCTTGTTGTCTCACACACACACCATGGATGAAAGGAAGAATAAAAAAAAATCTACTTGCGTTATGAT TTATGACATTTCTGGAGGCACATTTTGATCTACTTACATGTGTGTTTAGGAGCGGGCAACTGGTCGGTCTCGAGGTTTTG GATATGTTACATTTACATCAGTGGATGATGCTAAGGTAAGTTCATTAACACATACAAACACGGATAGCTGGTATATGCTA AGTTAACTCCTAGTCCTATAAGCTTTATCTAAACTTGGATGTCCTTCTGGCTGCAGAATGTATTATCCATTGAACACAAT CTGGGTAACAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGTTTTAGTCAAAGCAATGCATAAATATAGAGTCATGTG TATTTATTTATAGCCTGGCTTATGGCTGGTGTACTTATATGAATAATCATGATAATATTGTGTGATTTCACTACTGATTT TGCTATTCATTCTAAAGGAGGAGATGAAGGCACCGGTAAAAAAAGTTAACAGAATATTTATAGCCAGAATCCCACCATCA GTAACAGAAGCAACCTTCAGAAGGTATATGAGTGTGATTCTGTATTGAAAGAATTAGGAGTATTTTTTGCTGTGATAAAT TTTACGATATACTGACTGATGCTGAGGAAATTGGTGTACTACTCTAACATTTTTTCTTTGCCTTTTTCCTTATATTCTTT GCAGTCATTTTGAGAAATATGGTGATATTACAGATCTATACATGCCAAAGGTACTTTCTCCCATTTATTGTCACATGTGT AAAGTTTTGATGTAGTTGGCATGCATTTAGGTGTGCTGTGTACATATGCACATAAGACAATGCTAATTGCAGTTAGCAGT TATACAAATTTACTAAACACTTCTCCATATATTATTTGTCTTTTTTTTTTAAATTTTATATAGCTTATCATTTATTCCCA ACAGGATCAAAGATCAAAAACGCATCGTGGAATTGGTTTTATCACTTATGCAAATGCAGGTTGGGCCATCTTTTTCTGCG TGTTTTAAGTTTATGGATTTTTCATATGTTTATAATCCTTGAATTTCAATTTATTTAATTTAGATAGTTAACTAGGATCT TGATTAACATTGTCAAAACTCAAAAGGGGAATTTTGTGTGTACCATGGACAGGGTTGGTATGCATTTTTTTTTCCTCTAC AAGTAAATAAAAGGGGTTTAACTTTTAAATATTAAAATGCCTCATTGCTTTCATCTTGTTTTTTGTTTTCAAAGATTTGT ATAGAAAATTGTAAAAAATCTATTTGAAAACAGGAAATAAAATGAAAATATGGTGGCATTTTGTAAATAAAATTTAAAAC AACAAATGAAAACAAAAAAGTTTTCTCATAGGTTTTCCACATTCCCCCTAATTCAAGTGGCTTTGGAATTTTAATATTAA CAAGGTGCTAAGTATAAGGCTTGATAATTTCTCTCTTCATTTGTCATATTTCGTGTGTTACTTCTTTTACTTCCTATGAG AGTTATATGTTTATCTATCAGTTATAACATTTTGGGATAGCTTTTGGAGATAATCTAACTGATGCTTATGCTACAGTCAT AAGAGATCTGTGAATGTCCTTTCTGTTTTGTTTTTACCATAGTCTTAATTTTGAAAGAACTGGGAAGGATATATGATATA TCAAGACTGTAAGGAAGATGTTTGTGTTGCAGATTCTGTAGAGAATTTGATGAAAGAAACCCATGAACTGGAAGGTTCTA CTGTGGTCGTTGATCGAGCAACGCCTAAGGCAAGATTATTTAGAGCTTATTCTTTTCTGAAATAGTTAATGTGTTATTAT GGCACTTTTCTTTGCCCCTTTTGTTAAAGTTATTATCTGTTTGCAACGAGCATGTATTTAGGGTTGGCTATAAGAGACCT ATGATCTTGCCTATATCAAGCCCAGGAAAGACCATACATTTTACTAAATAAATCAGGCAATGGCTTTTTAAAAAACTATT TAGTTAAAAAGATCAGGTTTTAGGTCATTCAGAAAGCCATTTAGGCCAACCTTTTTTTTTGGAAGGAAACGTTCTGTAAC ACAATTAACTGGCAAAGACCTTACATCAGAGATAAGGATTAGTTCCAACCCAGAGGGGAACTCATCAATCCAAACAAAAC GAGTAGAAATAGCACATTTGGCCATAAAATCCGCAGGCAAGTTAGCTGTTCAACCTTATAAGTAATTGTAAATGGTATAA TGTTTTTTATTATTTATATAATTAATATATTAAATTTTTGTTAGAATATCTTTAAACTATTTACCTATTGACTTGTTTAA AGATTTAAACATGTTAGTCTATATAAAGATTTAATCATGTTAGTCTATTTAGAGATAGACTTATGACCTGTTTAAATACT TAATAATGAAGTAGATTTTTTTAATAGTTTTTCAGGCCCTAAACTTTTAAAAGGGCTTTAACAGATCTTGAAATGGAGCC TATATCAAGCCAACTGGCGAGACTCAAACCTTGAGTCCGGGAAGTAGGTTAGGCTTATGCTTCAGAGCCCAATCCAGCCG CGTTTATTTCCATGCCTACATGCATCATGCATTACTCATAAATCCCTAGCTATATGCATATTGCATATAATATAAATTAC CATTGTTATTGCCGCTAAAAACCTTTTATTAGAAAATGATATTTAATTATTACGAGTACTGTATGAACTCATCATGTATT TAAGAGCAGTATAAAGTTTGCTTGCCGAAGATCTCTAAGTCTATTTTTCTTCTAAAGTGACTTTGAGAAAGTTATGCATT TTAATTTTTGTATGCATGAAATGCCTTACATATGATGAAATGCATGAAACTTAATGCATGGAGAGCACCCAATTTGCACG TATTAATCACAGCTCCAAAACAATATATAGATCATTTTTAAATAAAGAAAAAAGATAATTTATATGGATAGATGGACAAA GATTTTAGAAAAGTATAAGAATCTTGTAGAGAAAATCAAGGAAAAATTTGTTGGGGGATTTTTTGAATCATCTCATTATT AGTTAGGAATCATAGAAGATGAAGTGTTGAAAAGTCAAGATATAATCTTGATGATGATCAAATTGAAGAGCTAGCAACCA TGGTATATAAATCGAAATTGAGGGAGAGGGTGCAGTTCTGCTTCCCTTATTTGTTTCTTGGCCAATGATGAGGTTCGTGA ACCCAATTATGCAACCGATCACATATTGGACATGAGTCCATATAAACCAGTCACTTCGAAAGTATATATTCTAGGAGAAA GAGAGGGGTGTGAGCTGGATGGTAATTAGTGGATGATGTGGCATGTGGTGTGAGAGAGAGGAGTTGGTTAGCAGATAGTA GCAGTTTATAGGGAATTGGGCGAGGAGAGAGGTGTAAGAGAAAGTTACACTTTCCTGTTGTGAGCGGAGAGACTGGCTCT TTTTAGGAGCTTAGCTTTAGTGTCTCATGGTGTTTCCTTTTGTATTAACTCTGATTTCTCTCCAATAGATCATTTCCAAC CAGATTTTGTTTTGGTTCTCTATTAACCTACACCTTGTTCTTCTCCTTTCGTTATTGTGTCAATGGTATGATTACCCAGC ATTTGTTTTGCTTGTTGCAAGTGACATGACATATTTGATGTTTATTTTATTGTGGCTTAGACTAGCTAGTGTCACTGATT CAGGTTCTTATGATTTGGCTTTAGAAATGGTTAGTGTCTTATACTTTCATCTTCATAAATAGGGTGAAGAGTTTTGTGAC TACTCTTATAACTGTTTTGTTTGTTTAGTTTTCACAACACCTAGAAGCTAAAATAATTCAATATTTTGTTGTGTTTTGTT GGTTAATGAAGGAAAATAACTCAATTATGACAATAATAGTGATTTTATATACATATAATTTAAGTGTAAAAAAAGACCAA TGATGATGATTTTGGGATTCTATTTTGCAAATATAAGGACTATCAAGAATTGCATGCGAGATTCATTTTACCCCCCCACC CTTATTATTGATTATCGGTGATATCATTAGTGTTCTTATATTTATTAATGCATATTTAAATAAAATTTCCTTTTGCATAT TGCTAGTAATTGATCTCTTCTTAGTGTTCATGCATTTAGTTTTGAACATTTTAAATAAGGCTTAACTGCACTTTTAGTCC CCCACTTTAATTAAATGTGTGATTTTGGTCCTTAACAAAATTTATTAGCAATTTTCGTCCCTCACGTTTACTAACGTTTG CAATTTTGATTTTCCGTCCAAAACTGTTAAAGATTTAACGGTTTTCTGAATTTTTTTTAATAAAAACAAAAAAAAACAGA AATGAGGAATCTTCATCATCTTCATCTTCAGTCTCCATTCTCACCTTCTTCATTTCAGCCTCAAAATCACCTCCTTCCAC TTCAACCACAAAATCCAAGCGACACCACCACCGTCGCCCCTCTTCCTCGTCCATCGCCGCTGGTCCTGCCTCCTTCACTC CCTCGACTTCAACGACCTCCGCCCTCGCTCTCGCCGCCATCGACCTCGGCCTCGTCTCCGTCACCCTCCTCTATTCCAAT GGAACCCCTCCCTCTTCCTCCCCTGCAACGACGTGGTCTCCCTAGAGAGCTTCCACTCCCTCGTTTCCCACGCGCGTCTC GCTTCCATTGGACCCAGGATCTACGTCGTCCGATCTGAAGTAAGGGTGGGGTGATCGTTTTGGTCCGCTGGTGGTGGTTG GGAGAATTGCTCCGATCTGACCCGATTTGTGTGTTATGGGTTTTTTTGGTGAAGGGATTTCTGGGTTTGTTGGTTTCTGA GGTTTATGGGTTGAATGGTTTCTAGAATGAGGCATTTGCTTGATTCTTGTTACCGTGGGTTTTGCTGATTTCTGGGTTCG TCTTGCTGTTCTGGAATAATTAATTTATAGGTCTAAGAAGAAGGTAGAATAATTTCTGGGTCTTTTCTTTGTTTCCCAAC CCAGCGATTTGTTTCTAATGTTCTCCATTTCTCTCTCGAAGCAGCGAGAGAAACACCTCCACTGCTCCACGTCTCTGGTG AATTTCGATGATTCTGCCTTTGTAGCCTTTTTCTCACTTCTCTATTCTTTGCCCCTTTATGTTGTGGATATCATTGTTAA AAATTTATTTGTTAATCACTATTTACTATTTGGACATAACGAAGAACAATTATACTTACCACATTGTACTGTTTTAATTA GTTAAGTTATTAGTAAACTTTGTTTGATTTCTCCAGTGAGAAATGCTACTCATGGGATAGTATTCAATGTCTGCTAGCTA TGTTGTTCGGCCTTATGAATTGGTCTTATTCAACTTTCAGAAAAAGAAGAAGAAGGTGAGCATGGAGGTTGAAGATGAAA ATTCATCATTTTTGTTTTTTGTTTTTAATTTTTTCTCAGAAAACCGTTAAATCTTTTAACAGTTTTGAACGGAAAATCAA AATTGCAAACGTCAGTAAACGTGAGGGACGAAAATTGCTAATAAATTTTGTTAAGGACCAAACTCACACATTTGATTAAA GTGGGGGACCAAAAGTGCATTAATTGGGCTTGTGATTTTACTAGTGGATTATAATCCAAAGATGTAATAATCAAACTGTG TGGTGGTGATGGCTAGTTGGTCCCAAGGCCCTTGACAATTAATTGAGGGGGTTAGTTGAACTCAGGCAGATTATTGGTCC CTTCTTAAATGAAATCAATGTAGCTCCTGTTTTAAATAATGAAAATAGCTTTTTAAACTCAACTGGAAATCTTCTGTTTT ATAATAAAATTAATCTTTTGGTCAGCTGAATTGTGGCTGCTTATTGGTACGGAAATGTAATTAAATAAACCAAGCAACAA ATATTTCTATATAACTGTATGGTGTAAGTGTTCACTTCTCATTGCACATGGAGATACATAAGTAACAAAGCAAGCCAAAA CTGTAAATGTGTTTTATTTTTTTGTTATCTTTATTTTCTTTAGTTTGACTTTCGCTTATAAGATTGACCATTTTTGCAGG AAGATGATTTCAAGCCAATTGGGAGAATGCCACAGGGAGGATCAATGGGGAGAATGTCACAGGGAGGATATGGTGCATAC AATGCATATATTTCTGCAACAACTAGATACGCAGCACTAGGTGCTCCTACTTTATATGACAATCCGGGTTCAGTTTATGG AAGTAAGGATGCAAGCACTGATCTTAATTTAAAATTATTAATTATTAATGTTGCTTCATAGTGATTACTTTATTTTGTAA TTAGGGGGAGAACCTGCTCGTGAAGTGGGCAAAAAGATTTTTGTTGGTCATCTTCCCCAAGAGGCTACCACTGAGGATCT TCGCCAGTATTTTGGAAGATTTGGCCATATATTAGATGTTTATATTCCCAGGGTAAGATATTAAAGAAAATGAATACAAA TGTGTAGAGCACTAGAGCTGACTAACTCACCTGTTTATTTTGATTTAGGATGCCAAGAGATCAGGTCATAGAGGTTTTGG TTTTGTGACTTTTGCTGAAGATGGTGTTGCGGATCGCGTCGCTCGAAGACCTCATGAGATTTGTGGACACCAGGTACTGA TTTTGGATTTGCTGTTATCGTGCATTACTACCCTACTTGCATGGCCTTTGTTTTCCTTTTTATTTTCCTACCCTCCTTTT GAAAAGGTCCTTTCTTGGTGCCAAGTATGAACTCAAGAGAGCTCATCTAGTTAGCACCTCCTGTTGGAAGGGAACGAATC ATAAAGTTTGTATTTGAGATTCTGTTACTGCCAACAGTGTCTATGTGACATTGCCTCGCAGTGCGTTGTAAATTATTGAC CACGTGTTTGGAAATGCGTCAGGGAGTCGTGTTTGACTAAAAAATTGCATGGATCCAAAAGCTACTGAGAGTAGCTTATT CATTTGAGAATCGATTCATCCAAACGAACATTTATTCGCAAATGACCTGAATAGTCGATCTCTGATTACTGAAAGTGCAG ATTCCTTATGACAACATTCTGTGATTGTCAGGATGAACTCCAATGGTCATTCTGTTTATTATGTATGCATGTGTTAAGAC TGCACGAATCTGTTCATCTGAAACTAGAATTATCATGTATGCACTATTAATATAATCACTGCAAGTATAAACATGTATTG GATTGATAAATAATCTGATTTCTTAACAAATTGCTGCTGCAGGTGGCCATAGATTCAGCAACACCTCTTGATGATGCAGG GCCCAGTGGGAATTTTATGTTGAATAGCATGGATTCTTTTGGGGGATTTGGTGGTCCTGTGCGACCTTATGGGAGAATGT ATGGCAGCCTAGACTACGATGATGTAAGTATAGTATAGAAAATAGAGACATTAAAGATTTTTTAACAAACACGTACGAGG AATGACAAGCCAAGAATTTGCATATTTCATGATTTTCTGGAATCTAAGGTCCTTCGAAAGTTTTTTTTTTGTCTTGTTCA GTAGTGTAAGTGAATTAATCTGCTGTATAAAATTCTCTGTTTTATCATTACGTTTAAAAGAATGGATAATGTGTTTCCAA AGTAAAATATTGGAATATTGAATCTAGCTGCATGCTTCTAGCTTCTGGTCACACTATTATTATTATTATTATTGCTGTTG TTGTTGTTGTCATTATTATTATTATAATAATTATTTTTATTATTATTACTATTGTTTTGCAGTGGGGTTATGGAGTTCCC AGGGGGAGGCCGCCATCAAGAGCGGATTGGAGGTATAGACCATACTAAGACAGCATGGTTTTATTGGCGGCATTGCATTC CAAATGCTACTACTACAGGTTTCAGGAACTGTAATGCAGGTTGTCCTATTGAGAATAGTTTTAAATTATTATAAGCTTTA TGAATTCGATTACTTAATCTATTGTAGACCAGATAAATTCTTCATGTACTTGAACTTAATATTGTATGATTGAAGATTGT GTCTAGTTGTAGTGCATATATTATGAAAATATATTGGCGACTGTTATTCATCTATGAAGGCATTTCTTGATATTTAATTT ACTCAAGTTCTTCAAACGCACTTTTTGTTCTAAAACATTTCACGCGCATTATATATTTATGATATTAGATTTTGGGAGGC TCGTATTTCTAGTCAATGTGAGATTTCTCAACACATGATATAAAATAAC 

CDS sequence (LotjaGi4g1v0104800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGCAAAGGAAGCTTGTGGTTTTGGGTATCCCATGGGAAGTGGATACTGATGGCTTGAAAGAATATATGAGCAAATT TGGTGAGCTGGAAGATTGTATTGTTATGAAGGAGCGGGCAACTGGTCGGTCTCGAGGTTTTGGATATGTTACATTTACAT CAGTGGATGATGCTAAGAATGTATTATCCATTGAACACAATCTGGGTAACAGGATGCTGGAAGTCAAAGTGGCCACACCA AAGGAGGAGATGAAGGCACCGGTAAAAAAAGTTAACAGAATATTTATAGCCAGAATCCCACCATCAGTAACAGAAGCAAC CTTCAGAAGTCATTTTGAGAAATATGGTGATATTACAGATCTATACATGCCAAAGGATCAAAGATCAAAAACGCATCGTG GAATTGGTTTTATCACTTATGCAAATGCAGATTCTGTAGAGAATTTGATGAAAGAAACCCATGAACTGGAAGGTTCTACT GTGGTCGTTGATCGAGCAACGCCTAAGGAAGATGATTTCAAGCCAATTGGGAGAATGCCACAGGGAGGATCAATGGGGAG AATGTCACAGGGAGGATATGGTGCATACAATGCATATATTTCTGCAACAACTAGATACGCAGCACTAGGTGCTCCTACTT TATATGACAATCCGGGTTCAGTTTATGGAAGGGGAGAACCTGCTCGTGAAGTGGGCAAAAAGATTTTTGTTGGTCATCTT CCCCAAGAGGCTACCACTGAGGATCTTCGCCAGTATTTTGGAAGATTTGGCCATATATTAGATGTTTATATTCCCAGGGA TGCCAAGAGATCAGGTCATAGAGGTTTTGGTTTTGTGACTTTTGCTGAAGATGGTGTTGCGGATCGCGTCGCTCGAAGAC CTCATGAGATTTGTGGACACCAGGTGGCCATAGATTCAGCAACACCTCTTGATGATGCAGGGCCCAGTGGGAATTTTATG TTGAATAGCATGGATTCTTTTGGGGGATTTGGTGGTCCTGTGCGACCTTATGGGAGAATGTATGGCAGCCTAGACTACGA TGATTGGGGTTATGGAGTTCCCAGGGGGAGGCCGCCATCAAGAGCGGATTGGAGGTATAGACCATACTAA 

Protein sequence (LotjaGi4g1v0104800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNLGNRMLEVKVATP KEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELEGST VVVDRATPKEDDFKPIGRMPQGGSMGRMSQGGYGAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHL PQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRPHEICGHQVAIDSATPLDDAGPSGNFM LNSMDSFGGFGGPVRPYGRMYGSLDYDDWGYGVPRGRPPSRADWRYRPY 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 1 87 87 4.2E-22
SUPERFAMILY 3 84 82 5.64E-22
ProSiteProfiles 4 80 77 14.931
SMART 5 76 72 4.8E-20
Pfam 6 63 58 6.9E-13
PANTHER 54 369 316 1.4E-115
PANTHER 54 369 316 1.4E-115
SUPERFAMILY 88 195 108 2.42E-23
Gene3D 88 175 88 1.6E-21
ProSiteProfiles 92 168 77 15.067
SMART 93 164 72 5.5E-18
Pfam 94 154 61 4.3E-12
Gene3D 229 313 85 1.9E-21
SUPERFAMILY 232 332 101 1.09E-20
ProSiteProfiles 233 309 77 16.142
SMART 234 305 72 5.3E-17
Pfam 235 289 55 8.7E-14

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0104800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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