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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0104900 |
| Transcript ID | LotjaGi4g1v0104900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Remorin family protein; TAIR: AT1G45207.3 Remorin family protein; Swiss-Prot: sp|Q7XII4|REM41_ORYSJ Remorin 4.1; TrEMBL-Plants: tr|K7KP85|K7KP85_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0104900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:14601391..14604564) extracted from Lotus japonicus Gifu genome v1.2.
AATAATGTCACCTTCTTCCTCAACCTTTTACAATCGGGAGTACGTCGTTCCTCTTCCATCAACGCTTTCTCTAGAGTGCT TTGACTAGTTCAATCACTTTTCTAGTTTCAAGCTTAGTTGTTACAATTATATATTAATTCATTGCACAACTCCCAGTTAG TTATCAGTCTCTTTTGCATTGGTGTAACCTTTATTATTCATGAAGCATGACCGGTCAAATTTTAATGTGGTTCCTTTTTG GGCACAAGGAATCTGATCAGATTTAAGTACCACCGAAACATCAACCTCAAGCTCAACTGCTCAAGTAGTAAAAGTAGAAA CAGGGAAAGAAAAAGAGTAGTAGTATAGTACCTCTGCAACCAAATGGAACTCTCTAACTCACTCAGCAGTGACATGAAGA ACACCTCATCTTCTTCCTCTTCCCATAACCATGGCAGTTTCCCAAGCCCAGGTGCACCATATTACAGGGAAAGAACCAGA GATCATCAGAATCAAAAGGGGTGGAGCTCAGAGAGAGTATCAAATTCAAAGCTTAACAACTTCAGCAGAAGACACACCAT GTCTGGGCTAACACCCTTCAATTTCATTGGTGGAGGAAGAACAATGCCTTCTAAATGGGATGAAGCTGAGAGGTGGATTT GTAGTCCAGTTTCAGCAGCTGAGAGCAGAAGAAGAAGCTCACGTTCTCAGCTTCAGCGGCGGCCAAAATCTATAAGCGGC CCAATTGTGCCTCCTCCTCCTCCTGGAGTGGTGGCGGCTAACTTCTACTCACCTGGAATCCAACATCGCCAAGGCTTTGT TGTGAGGAACTTGATGGTGGGGTCCCCTTTCTCCACTGGAGTGCTGGCACCGGTTGCTGTTTCTGTCCACCATTATTATG ACCCTCATGGACATGATGTTGATGATGGTGTTTCTGTTTATGGGTGTGACATTGACAATGTTGGAATGCAATATGCTGGT CCTGTGCATTCATCAACCTCCACTGTACCCATGTGTTCTCAACTGCCACCATCTCCTCTCTCTACAGGTATTCAGGCACG CATATTTGAAAATTCTTCTAGGATTAATTCTGAAGTCGAAATTAATTCTGGAGACAAACTTTTACGAATAACTTATGAGT TTTAGAATTGATTTGAGAAGCTGATCCAAATATGTCATAAAAAACTATATTGCATATTCCATGTGTACACATGTATAAGA TACTCTTTGTTTGTCATCAATATTTGATTATAGCATACGAAACTGATTCTAACAGCATGTGTGACTAGATTACAGGGGAT AATTAATGCGCACCGCCACTGTGTTAGATTCAGAACAATATTGCCCAACAAGACAAATTTATTCATCAAAGAATGAGTGA ATTTTTGCATATCTATGTTGTTTAATCATTCACTACTTTGATTTGGCAATGTAACTTTGGCCTTGGTTCATCTAGGACTA GGAGGAGGAAAATCAGTGAAAGTGTTTGACTATGTTATCTGTTTTTTCTCCCCTTAATCATAGGATAAGAGGGTCATCAG TCATCACTCACTAGAGCTTTTATATATAACATGTCTGGATCAGCAGAAGCTACTCACGTTAATTTCTTCACATAATTGAT TTTGACTTTAAAATCAATTGTAGAAGGTTTTCCAAACATGCTCATAGTATTATATGTTCACTTCAACATGTTGAATACAT TCTGTTATTTTAATTTACAGATGAGAAGCATGATGTATTGAAGAATGAGGAAACCCTGATGTCTCTTTCCGCAAGATGCG ATAAAGGCACCCAAATGAGCCCTGAAGAAAGTGAGAATGACTCACATTCATCTCGAAAATCTTCTACCAATTCAGTCATG GATCAACAAGCTTGCCATTCTCCCAAGTTAGAAGTCAGGGATGTGCAGGTTGATTGTCAAGCTACTGTTGTGAGGGGGTC CAAGAGGCATTCAACCAAATTGACCAAAAAAGACTCACTACACAGCACAGACTCAAGAGAGAATAGTGCTGAAGCTCAAG TTACATGTTGGGATATTGAAGAGTCAACCTTAGACAATTCCAAGTATGTTTGCATAAATACTAAATATTATATTTTTCTC AAATTAAATGTGATTTGGAATATGATACCAGTTGAGTGCAATGTGAACGGTTTTTCATCTCAATTCATAAGAAAACTTAT GTTCACTTTAACCTCAAAGTGAGTACTAATATCCGTTTATATTGGTGCCAACCGATATTTGAACAGTCCCTTTGGTTCCT TGACTTGGGGTTGCAGCAGAACAATTTCCTAATATAGATCAAAATTGAGGCTTCAAATGAATCCGAAAATTTAAGGCTTA GATTTTCAGTTCCTTAGATTATCATTAGCTAGACATTTGAATATCTCCAATATTCATTCAGAGAGCATAAGACATATGTA ATATGATGCTTTTAGTTATGCATTTATTCATGAACTTCTGCTCTGGCGCAGGTTACAGAGAGAGGAGGCTAAAATCATTG CCTGGGAGAATTTGCAGAAAGCAAAAGCCGAAGCTGCAATACGGAAACTAGAGGTTTATTTTTCGTATTCATCATCATTT GTCTTACGTTTCTCACACCATGACAGTTTTGAGCCTAAAACAAATTAGTATCAACATTATCCTCATGTGTTGAAGTTTCA CATGATATTCTCGTATTGAAATTTTGTGTTTATGTCTCCTGATTGATATCAAATAAGTGATAATGTCTTTCCTGATGATG ATCATGTTTCTTGGCACAGATGAAACTGGAAAAGAAGAGATCATCATCGATGGATAAGATTCTAAACAAGCTGAGAAGGG CACAGTTGAAAGCTGAAAACAAAAGAAGCGTAATGCCTGTACAACAGGTTTCCAAGCTTTGCAAAGTATTTTCATTCCCC AAATATGTCCAGATATGGTCTCCAGGAACCTGCTTCCGTAGCCATGCATCATAGGTTATAAAATAATGTTACATTTTCTT AATGTCACTTGATGAAGTTGGAATGTGTTTATAAATAAGCCAAATAATCTTCACTTGTACCTAGATGTGTTACTTGTATA TAATAAAACACAACGGTTTATGTGGTGGACGAACTTTCCTTTTATTTCTTTTCAAAGTATATGTTTCTTTTATTGTTCTT TATGGACAAAAACGTAGTCTAAGACGAAGAGTACTATGCTAGTGATTGAGACAC
CDS sequence (LotjaGi4g1v0104900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTCTCTAACTCACTCAGCAGTGACATGAAGAACACCTCATCTTCTTCCTCTTCCCATAACCATGGCAGTTTCCC AAGCCCAGGTGCACCATATTACAGGGAAAGAACCAGAGATCATCAGAATCAAAAGGGGTGGAGCTCAGAGAGAGTATCAA ATTCAAAGCTTAACAACTTCAGCAGAAGACACACCATGTCTGGGCTAACACCCTTCAATTTCATTGGTGGAGGAAGAACA ATGCCTTCTAAATGGGATGAAGCTGAGAGGTGGATTTGTAGTCCAGTTTCAGCAGCTGAGAGCAGAAGAAGAAGCTCACG TTCTCAGCTTCAGCGGCGGCCAAAATCTATAAGCGGCCCAATTGTGCCTCCTCCTCCTCCTGGAGTGGTGGCGGCTAACT TCTACTCACCTGGAATCCAACATCGCCAAGGCTTTGTTGTGAGGAACTTGATGGTGGGGTCCCCTTTCTCCACTGGAGTG CTGGCACCGGTTGCTGTTTCTGTCCACCATTATTATGACCCTCATGGACATGATGTTGATGATGGTGTTTCTGTTTATGG GTGTGACATTGACAATGTTGGAATGCAATATGCTGGTCCTGTGCATTCATCAACCTCCACTGTACCCATGTGTTCTCAAC TGCCACCATCTCCTCTCTCTACAGATGAGAAGCATGATGTATTGAAGAATGAGGAAACCCTGATGTCTCTTTCCGCAAGA TGCGATAAAGGCACCCAAATGAGCCCTGAAGAAAGTGAGAATGACTCACATTCATCTCGAAAATCTTCTACCAATTCAGT CATGGATCAACAAGCTTGCCATTCTCCCAAGTTAGAAGTCAGGGATGTGCAGGTTGATTGTCAAGCTACTGTTGTGAGGG GGTCCAAGAGGCATTCAACCAAATTGACCAAAAAAGACTCACTACACAGCACAGACTCAAGAGAGAATAGTGCTGAAGCT CAAGTTACATGTTGGGATATTGAAGAGTCAACCTTAGACAATTCCAAGTTACAGAGAGAGGAGGCTAAAATCATTGCCTG GGAGAATTTGCAGAAAGCAAAAGCCGAAGCTGCAATACGGAAACTAGAGATGAAACTGGAAAAGAAGAGATCATCATCGA TGGATAAGATTCTAAACAAGCTGAGAAGGGCACAGTTGAAAGCTGAAAACAAAAGAAGCGTAATGCCTGTACAACAGGTT TCCAAGCTTTGCAAAGTATTTTCATTCCCCAAATATGTCCAGATATGGTCTCCAGGAACCTGCTTCCGTAGCCATGCATC ATAG
Protein sequence (LotjaGi4g1v0104900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELSNSLSSDMKNTSSSSSSHNHGSFPSPGAPYYRERTRDHQNQKGWSSERVSNSKLNNFSRRHTMSGLTPFNFIGGGRT MPSKWDEAERWICSPVSAAESRRRSSRSQLQRRPKSISGPIVPPPPPGVVAANFYSPGIQHRQGFVVRNLMVGSPFSTGV LAPVAVSVHHYYDPHGHDVDDGVSVYGCDIDNVGMQYAGPVHSSTSTVPMCSQLPPSPLSTDEKHDVLKNEETLMSLSAR CDKGTQMSPEESENDSHSSRKSSTNSVMDQQACHSPKLEVRDVQVDCQATVVRGSKRHSTKLTKKDSLHSTDSRENSAEA QVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKILNKLRRAQLKAENKRSVMPVQQV SKLCKVFSFPKYVQIWSPGTCFRSHAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 63 | 63 | - | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 11 | 424 | 414 | 1.9E-140 | – | |
| PANTHER | 11 | 424 | 414 | 1.9E-140 | – | |
| MobiDBLite | 47 | 63 | 17 | - | – | |
| MobiDBLite | 97 | 124 | 28 | - | – | |
| MobiDBLite | 241 | 275 | 35 | - | – | |
| MobiDBLite | 293 | 315 | 23 | - | – | |
| Pfam | 317 | 405 | 89 | 4.6E-23 | ||
| Coils | 352 | 372 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0104900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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