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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0105900 |
| Transcript ID | LotjaGi4g1v0105900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein family; TAIR: AT3G19184.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q0JP99|Y1341_ORYSJ B3 domain-containing protein Os01g0234100; TrEMBL-Plants: tr|V7CF75|V7CF75_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0105900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:14701671..14706465) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTGATACATCAAAAAGATAAATTGCACAATCCAAGAATTGATTTCTGGATCTTATTGATCTAACTCACATGTCCTT TAAATCTTACTTCTACCACTTACTATCATTTAAGATATGATCCAAAATATTAAGTGAACAGTTTCTACCTTGGAAAAATC CCAATATTTTGTTATTGCAATTGGAAATACCAACCAATTTATACAATAACACAAACAAGAAACAACAGAAGGACACAACA CCAAAGGTGGTGAATCTAACAGTCTGAAACGTTAAACGCAAATTTAACTTTGGCCTTTCTCTCTCATCAATAGATCAACG ATCCATCATGTAAGCTCTCTCTCTTTTGATCAAAACCAACACCACCCCACAACCAATCCAAGGCCTTTCTGGCCTCTCAT TCATTCTCTTTGCATATTCTTGCGTAAGAGAAGAATGCATGCCAATTGAAACAGGGAAAGGACTCGTCTTAATTTGTTAA GACCTGTGAAAATGGTGGTGGTTGATGAAAGAAGAGGGGATTGGATGGTTAACAACAAGGAACATAATGATCAAGATGTA ACTGTGGCATTTCATGGGGAGGACATGTACGAGGATGCACCTCATGCCCATTATTCTATGATGTCTCCTTTACACATGGT TTTCTATCTTCTCTATCTATGTTCCTTTAATTTTCATGAAATGTGCAAAAGTTTGCAACTTTCTTTTCCTCTATTGTGTT TTGCTAGATTAAGAACAAAAGGGTTTGATGGGTATCTTAATTTTTGTTTGCTTAGTCTTTTATAGTTTCATGGGTAGGAT AATACTAGGACCCTGATAGCATGATATCATATTTGAAAATCCCTCTATAATTGATTCTTCAGCCAAAACCAATTCTGGAA AGAAGCTTTTGTGAGTGACTTCTGGTGTCAGAATTGATTTTGAGGAAACATAAGCTGATCTAAACCAGCTAGACTCCCTT GGCTCTTGCTTCTCTATGGGCCTCCTTTTCCCGAGTTAGTAATGAGGAGCTGTAGCTATGTTGCGTTATTAGCAGGATAA ACCAAACAAGGCAGTGGAAACTAACTGCATACTTTTGAACAGTCAAACAAAGCAAGTATGATTTAGAATGATTTTTTTTC TTGTGGTTGGATTTGATGTTGAACTATTGGGATTTTCCTACCCTTGATTGAAAAATAGGGGAAAAAACTATAATGTGTGT TTTGATACCTCCATAAGAAATGTTTTGTTCCCTTTTTATTGTGAAGTGAGTGCTGATGTCGGTTTGCACACAAACGGGTA TCCAAACATAGTCCACACAGAAGCTAGTTTTGATAAATAAAATTATTTTGTTGCCTGTAATAGATTGAGTGGGTTTCTAT TAGAAGATACCCTGTAGATGAGACAACAAATTAAACCTCAAGTCGTGAAGGGGTAATGCAACATGGGAATATACTAGAAA AGTATTGTTTCTATCTTAGGCTATTCGCTATAGTGATGGAACCAACTCGAAATGATAATAGAAAATGAAATTATACATAT GTTGCCATCAAATGACTTAAATCACATGTCCTCTTTTCTTCTTCCCTTTATTTGATAAAAATATAACAGTAGTAAAAAAT TTATTGGAGAGACAGAACAGGATGAATGGTTTCAATCCTATAACCTAAAGAGAATTTTTATGTCCAAACAAGCTTTTAGC TTCTCTTTAAATCTAAGTTTTTTTTTTTAAACATGTCTTCACTTTGATTCTAAATTGATCACTCCTAATGGTGTGTGCAG CCTTCTCTGCACCATAGTTATCTTGGCACCATGTCTTTTCTTGTTTCATAATGTGCTATATCCTTGGCTCTAGTCCTAAT TTTGACTTCTAATTTTCTGGCTGTGCTTCGTTATTTTTTGAAGTTAATATCTTGTAGTACTTTGCAAGAATGAACATTTG TTTTAAACGGAACAATTCTTTGTAATCAAATTTCAAGTGATTGATAGTTGGAGTAAATGCTTCTACAGGCATTATCTGAT GAAGCACAGTCACAGAAGCATGGAAGTGGAAGGTTAGTATAGCATCAAGTAATATTTTATTAATCTCTCCTCTATTTTAA GTGAGTTACTTACGGTAAAATTGGGACAACATCTTTGCTTGCAGCCCCATTAGGGCTGCAACAGATGGAACATCCTCTCG TGGTGAGGCGTTGTCAACTGCTGTGATTCGAGCACAGGAGATTCAATCAAAGTTGGTACCGGATTTCCCTAGTTTTGTGA AGTCCTTGGTCAGATCACATGTTGCTAGTTGTTTTTGGATGGTAAGCATGCATTTTGATAGACCAAGTGAAACCTAATAG TATGAAGAAACCAAATTGCATTATTTTTCAGAGCAATGTTTTCTGATTTCTTCTTATAGGGTCTGCCTGTGGCGTTCTGT AAAAGGCACTTACCGGATAAAGATACAACTATTACTTTGGAAGATGAATCTGGTAAAGAGTACAAGACGAAATACATTGC ATGTAAGACAGGATTGAGTGCTGGTTGGAGGCAGTTTTCTGCTGTGCATAAATTGCAGGAGGGTGATGTGGTGGTCTTCC AATTAGTTGAACCTACCAAATTTAAGGTAATGGTTCATATTTTTGTTTTTGTTTAAATTTTCTATTGTTAGCTTAATTAT AATAGTGATTCTATATTTCAGTACAGTGCTTACTTTCTGTATTAGTTACATTAATAATTCTTATCATAATAAATAATCTA AAGTTTCTGATAATTGACCTTACTATTCTGTGGCATCCATGTTACCTCTCTTCATGGATCAGATACTTCTTCTGAAATGG GGATGTCAATATTATTTACAAGATATATTTTGTGGGTCCAAAACATTGTATCCAAATAATGAAACACTAGGAACAAGGCA TTAGTATGTATCCTCTGACACAAAATGATACAACTGTGCATCATGAGTCCTTGACTGATATGGAGGGTTTGATCTCTATC TTCCCCTTTCCATCTTTTACTCATATTGGAGTTAGCAATGCGTATATCTTATTTTTTTTCTGAAGGTATCTCTTGCAAAA TAGGAAACATATAAGCTGTCACAAAGCAAGAGAAGTGAGATTTAGTAGGAGGTGATCCATGCAATATGATTAACACCCTG TTAATGTTTAGGAGCCTTGGGTGCTTGCAAGACTAGTAAATTACAAAAATGTGTAAAGGCGGTGATTCGATATGCTTTTG GGACTCTTCTGTCAATCTTAGAAGTTATGACAAGGAGGAGTTTTTGTTTAGACACCAAATTCTTATGTTTGTTGTAGTCA TTGGTATGCTTCTTTGTGTGACTTATGCATATGTTTCTTCAAAGCTAACACTTATATCTAAAGCAAAATTTAGGAGGTTA TATGGTGGCAATGATGGCATTTAATTGCTATCAAGTAAAGATGAACAAGTATCATTTTTCTGAGTATAGTGGGGGGGAAG CATTAATTTTATTTTCTTCTTTTTCAGGTTTATATAGTAAGAGCTAATAAGTTGAGAGAACTTGATGGAGCCCTTCCGAA TCTTGAGACTTCTATAAAACAAAAAGTTGGAGGCAAGTCTGGTTTCTCTACGCTTTTAATTTTTTGCGTTGTATCAATCA TGAAAACAGCCTTGGCGCAACGGTAAAAAGTTGTTGCTATGTGACTGAGGTCACGAGTTCAAGTCCTGGAAAAGCCTCTT GTGTAACAAACAGGGTAATGCTGCATACAATAGACCAAGTGGTCGGACCTTGCGCATAGCGGCAACTTTGATGCATTGGG CTGTCCTTTTTTTTTGTATCAATCATGAGATCATCAATGATTTATGCATTCTTGATGTTAGTGTCTTAACATTCTGTATG TTGCTCATGTTCTCAGGCAGAAATAGCACAAATACTGAAGCTGTACCATCTAATAGCTCAAAGAGAAAGCATGGTAAATC TGTCCCACAAGAGGACCAAAAGAAAAAGAAGACCATTGTGTCAAGAATGGGTCCTAAGGCTAGACAATCTGCAGAACCAT CTGAAAACAGTAGTGAGGATGCTCTCTCAGAAATACTAGAGGGCTTTAGAATGCTTCAATTCAAAGACATAAGAGGATTT GGACATTTCAGCATCCTAGTAGATGGAGTGGCAATAGATGCTGAACTCTCTAACGAAGTCCGAAACAAGTACTACAAGCT CTGCCACAGTCAGCAAGCATTTCTTCATGAAAATCTCATCAAGGGTATGGACTACATGCTGATTGCAGGAATAATATCTG AAACTGTCAACATTGCTGATGCCATAAAAGTTAGTGTGATGTCCACCCCGCGTGTTGAATTTACTAATTGGGATAAAACT TTGCATGCCTTTGAGCTTCTGGGCATGAATGTTGCATTTTTAAGAGCTCGATTGCGCAGGCTTGTGAGCCTTGCTTATGA AACAGAAGATGCCTCGGAGGCCAGAAGATACTTGGCCTATAGAGCTGAGAACAGTCGAGCAGATGAAGAACTGAAGAACA TGGAAACGAAGCTCGAAGAGTTGAAGGGAGCTTGTAATGATTTTGGTGCTTATCTTGAGAGCTTGAAGTGCAAAGCTGAA AGCTATCAGCACCAGTTCCAGAAAGAAGTTGCTGCTCCTTGGTGAAACTTACTTTTTAAGTGTACGTGATAATACGTGTA TGTTTGGTTCAGATAATCTCTGCATTCTAAATCTTTTAGAGAGGAAAAGCTTCAACTGAAACATCTAGCAACATGTAGTA TATGTGAATTGATATGAGTGGCAATGAGAATAGCCATTAACTTTTTTGAATGGTTTGTTGAAGTAAAAGGGCAAC
CDS sequence (LotjaGi4g1v0105900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGTGGTTGATGAAAGAAGAGGGGATTGGATGGTTAACAACAAGGAACATAATGATCAAGATGTAACTGTGGCATT TCATGGGGAGGACATGTACGAGGATGCACCTCATGCCCATTATTCTATGATGTCTCCTTTACACATGGCATTATCTGATG AAGCACAGTCACAGAAGCATGGAAGTGGAAGCCCCATTAGGGCTGCAACAGATGGAACATCCTCTCGTGGTGAGGCGTTG TCAACTGCTGTGATTCGAGCACAGGAGATTCAATCAAAGTTGGTACCGGATTTCCCTAGTTTTGTGAAGTCCTTGGTCAG ATCACATGTTGCTAGTTGTTTTTGGATGGGTCTGCCTGTGGCGTTCTGTAAAAGGCACTTACCGGATAAAGATACAACTA TTACTTTGGAAGATGAATCTGGTAAAGAGTACAAGACGAAATACATTGCATGTAAGACAGGATTGAGTGCTGGTTGGAGG CAGTTTTCTGCTGTGCATAAATTGCAGGAGGGTGATGTGGTGGTCTTCCAATTAGTTGAACCTACCAAATTTAAGGTTTA TATAGTAAGAGCTAATAAGTTGAGAGAACTTGATGGAGCCCTTCCGAATCTTGAGACTTCTATAAAACAAAAAGTTGGAG GCAAAAATAGCACAAATACTGAAGCTGTACCATCTAATAGCTCAAAGAGAAAGCATGGTAAATCTGTCCCACAAGAGGAC CAAAAGAAAAAGAAGACCATTGTGTCAAGAATGGGTCCTAAGGCTAGACAATCTGCAGAACCATCTGAAAACAGTAGTGA GGATGCTCTCTCAGAAATACTAGAGGGCTTTAGAATGCTTCAATTCAAAGACATAAGAGGATTTGGACATTTCAGCATCC TAGTAGATGGAGTGGCAATAGATGCTGAACTCTCTAACGAAGTCCGAAACAAGTACTACAAGCTCTGCCACAGTCAGCAA GCATTTCTTCATGAAAATCTCATCAAGGGTATGGACTACATGCTGATTGCAGGAATAATATCTGAAACTGTCAACATTGC TGATGCCATAAAAGTTAGTGTGATGTCCACCCCGCGTGTTGAATTTACTAATTGGGATAAAACTTTGCATGCCTTTGAGC TTCTGGGCATGAATGTTGCATTTTTAAGAGCTCGATTGCGCAGGCTTGTGAGCCTTGCTTATGAAACAGAAGATGCCTCG GAGGCCAGAAGATACTTGGCCTATAGAGCTGAGAACAGTCGAGCAGATGAAGAACTGAAGAACATGGAAACGAAGCTCGA AGAGTTGAAGGGAGCTTGTAATGATTTTGGTGCTTATCTTGAGAGCTTGAAGTGCAAAGCTGAAAGCTATCAGCACCAGT TCCAGAAAGAAGTTGCTGCTCCTTGGTGA
Protein sequence (LotjaGi4g1v0105900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVVDERRGDWMVNNKEHNDQDVTVAFHGEDMYEDAPHAHYSMMSPLHMALSDEAQSQKHGSGSPIRAATDGTSSRGEAL STAVIRAQEIQSKLVPDFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDTTITLEDESGKEYKTKYIACKTGLSAGWR QFSAVHKLQEGDVVVFQLVEPTKFKVYIVRANKLRELDGALPNLETSIKQKVGGKNSTNTEAVPSNSSKRKHGKSVPQED QKKKKTIVSRMGPKARQSAEPSENSSEDALSEILEGFRMLQFKDIRGFGHFSILVDGVAIDAELSNEVRNKYYKLCHSQQ AFLHENLIKGMDYMLIAGIISETVNIADAIKVSVMSTPRVEFTNWDKTLHAFELLGMNVAFLRARLRRLVSLAYETEDAS EARRYLAYRAENSRADEELKNMETKLEELKGACNDFGAYLESLKCKAESYQHQFQKEVAAPW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 53 | 73 | 21 | - | – | |
| PANTHER | 57 | 462 | 406 | 2.8E-173 | – | |
| PANTHER | 57 | 462 | 406 | 2.8E-173 | – | |
| Gene3D | 80 | 194 | 115 | 3.3E-27 | ||
| SUPERFAMILY | 96 | 192 | 97 | 2.94E-24 | ||
| CDD | 99 | 190 | 92 | 1.5491E-28 | ||
| Pfam | 101 | 191 | 91 | 1.7E-17 | ||
| SMART | 101 | 192 | 92 | 2.9E-26 | ||
| ProSiteProfiles | 101 | 192 | 92 | 13.761 | ||
| MobiDBLite | 208 | 267 | 60 | - | – | |
| MobiDBLite | 209 | 231 | 23 | - | – | |
| MobiDBLite | 232 | 247 | 16 | - | – | |
| Coils | 405 | 432 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0105900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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