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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0106100 |
| Transcript ID | LotjaGi4g1v0106100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin dependent kinase inhibitor; TAIR: AT1G49620.3 Cyclin-dependent kinase inhibitor family protein; Swiss-Prot: sp|Q94CL9|KRP7_ARATH Cyclin-dependent kinase inhibitor 7; TrEMBL-Plants: tr|I3SDJ1|I3SDJ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0106100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:14736967..14739212) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCTCTCTCGTCTCGACCAAGCCACACCCAAACAAATCTTTATATATCTTCCTCTCTTCCTAACTTCCTCACCACGTC TCGTTCATTTCCTCTTCCACCGCATCACCACCGCGCACCGCCGTCAACCTTACCGGAGACCAATGGCTCAGCTCAGAGAC AGAGTAAGAACTCGATCAGCATTATTGTCCATGGAACCTGCTTCTGCTGAAACTTCATCAAAGAGAAGCAAAATCGCCAT TAACACCACCACTAGCCGAGAAGAACTACTCAGATTCTCACCATCCTCCTCCGTTCAGCTCGAAAGCACTACTAGTACCA GCGACGGCGGTGCTCCACCGCCACCGGAGCAATGCTTCTCCGGCGCCACGTCGGACGAATTGCCTTGTTGTTCCAGCAAT GAAAAAACCATCACCAAATTCTCAGATCCAGAGGTGATTGATTAATCAAAAGCGATTAAAACAAAACTGCAATTCATTCG CTTCTGATTCTCTGAATTCGAAAGCGCTTTTTCATTTTTATTTTTTAATTTACATGAAATTTATCAATGTAACGCAATTT GCAGGTAGAGAGCGCGCGAGCTGAAACGGCGTCGTGCGATGGCAGAGACGAAGAAGAAGAAGAAACAACAAGGTCTTGAA ATTTATTTATTTATTTAATTTTTTTTCAAATTTTTGAATTTGGAGTTGTAATTAATTTTCCGCTGTCTTTTCAAACTTTA AATATATATAAAAAAACAGTTTATAATTTTGATTTTTGAATTTGAAACGAATGGTGCGTGTGTATAACTGTTCATCGTAA TTATGATTTTTTTTTCCGCTCCAATTTGCAATAACAATGGGTACAAATTCTGTGACTCTCTGACATTCACTCACGCATTT ATATAAATAAGTATCAGTATCAATCAATCAATTTCACATTCTAAAAACGGAAACATTGTGTGTGCGCAGGAAGAGAGAGA TGTCGACGAGTCATGGAACGAGTTCTCAAGAGGTGGACTCAGTGGAGGAGAAGGAGAAGCTGCAAAAGATGCCAACTGAG TCTGAGCTTGAAGAATTCTTCTCTGCTGCTGAGAAAGATATCCAGAAACGGTTTTCACACAAGTATGATAGAATTTAACG AATATGCCTTTTTTGTCTAGTTGCTTTCAGAATTAGGATCTCACCAGTCACCACATGTTATGCTTTTTTTGTTTTTCACT TTTGCCACTCACCTTTACAGCATGAAATTTTGGTTTGGGTATGAAAAAAATGAACTGATCTTCAATGTTACATTTACATA AAATCAATCATATATATATAGAATTATATATATGTTCTAAATTTGGGTAAAATGGGTGTGGGAGTAATAGTAATGTTTTT GTTTTGTTAATAAATCTGCAGGTATAATTATGATATTGTGAAGGATGTGCCATTGGAAGGACGCTATGAGTGGGTTCAAT TAAAGCCTTAAAAGTGCCCCTTTTGGCTCTTCTTTCTCCAAACTTTGATCATGGAAGAAGAGGGTGATATGTGAAGAATT AGCTATAAGAATGCCACTTTACTTTGCTGACATTATTAATTATTCTAAGTTAATTTAGGTGCTTGATTTCAATTCAATAT ATGTCCTATCTTTGAAGCTAGCTAGCAAGGACTAAGCTTTTGTTGGGTGTACAGCTTTATTTTAATTTGCTTCTCTATGG TTGGGTTCCTTTATTAGTAATTATTAATGTACGGTAATGTAGTTATACACATTATAGAAGCTTTGTCCTGAGTGGAATTC TGCAAATTCCCTGGGTGGTGAACTGGTGATGACAATAGAACAAAACTTGTTCCTGGCTATAACAAAATTCTAGTCTTATT TTGCTTTTGTGCACACACCCTCTGTGTCTGTTTCTGCCTCTGGTTTTTATCTTTGAAGGGTAGTACAACAACAAAGTCAG TGCCTGTCTTTTATCCTCTTTTTAGCTTTTTTCTTTCTTTCTTTCGTCTTTTCCGTGGCGTCAATTTCCCCTTTCTATCT TTTCATTATTGCTTTCAATTATTTCAGCTGCCCTTAATTATTTTAGCTACGGAAACACTTTTTCTCTGTTCTTCTCATCC TGAATTGAACCTTTCTGCTGCGGTAATTTGGATGGATATGAGTGGGTGGACGGTGAGGTCGGTTTAATTTCATATGGTAA ATGATAGGCTTAATTGCCCCTTTGGTCCCCCAACTATTGCCTTCCTGCGAAAATCGTCCTCAAACTTCAAAATTAGCAAA AAAACG
CDS sequence (LotjaGi4g1v0106100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCAGCTCAGAGACAGAGTAAGAACTCGATCAGCATTATTGTCCATGGAACCTGCTTCTGCTGAAACTTCATCAAA GAGAAGCAAAATCGCCATTAACACCACCACTAGCCGAGAAGAACTACTCAGATTCTCACCATCCTCCTCCGTTCAGCTCG AAAGCACTACTAGTACCAGCGACGGCGGTGCTCCACCGCCACCGGAGCAATGCTTCTCCGGCGCCACGTCGGACGAATTG CCTTGTTGTTCCAGCAATGAAAAAACCATCACCAAATTCTCAGATCCAGAGGTAGAGAGCGCGCGAGCTGAAACGGCGTC GTGCGATGGCAGAGACGAAGAAGAAGAAGAAACAACAAGGAAGAGAGAGATGTCGACGAGTCATGGAACGAGTTCTCAAG AGGTGGACTCAGTGGAGGAGAAGGAGAAGCTGCAAAAGATGCCAACTGAGTCTGAGCTTGAAGAATTCTTCTCTGCTGCT GAGAAAGATATCCAGAAACGGTTTTCACACAAGTATAATTATGATATTGTGAAGGATGTGCCATTGGAAGGACGCTATGA GTGGGTTCAATTAAAGCCTTAA
Protein sequence (LotjaGi4g1v0106100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQLRDRVRTRSALLSMEPASAETSSKRSKIAINTTTSREELLRFSPSSSVQLESTTSTSDGGAPPPPEQCFSGATSDEL PCCSSNEKTITKFSDPEVESARAETASCDGRDEEEEETTRKREMSTSHGTSSQEVDSVEEKEKLQKMPTESELEEFFSAA EKDIQKRFSHKYNYDIVKDVPLEGRYEWVQLKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 152 | 152 | - | – | |
| PIRSF | 1 | 193 | 193 | 1.1E-37 | ||
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| MobiDBLite | 17 | 64 | 48 | - | – | |
| PANTHER | 18 | 193 | 176 | 2.2E-36 | – | |
| PANTHER | 18 | 193 | 176 | 2.2E-36 | – | |
| MobiDBLite | 77 | 91 | 15 | - | – | |
| MobiDBLite | 92 | 124 | 33 | - | – | |
| MobiDBLite | 134 | 152 | 19 | - | – | |
| Gene3D | 139 | 193 | 55 | 1.4E-7 | – | |
| Pfam | 147 | 191 | 45 | 1.3E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Cyclin-dependent protein serine/threonine kinase inhibitor activity | Stops, prevents or reduces the activity of a cyclin-dependent protein serine/threonine kinase. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Cell cycle arrest | A regulatory process that halts progression through the cell cycle during one of the normal phases (G1, S, G2, M). |
Expression pattern of LotjaGi4g1v0106100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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