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LotjaGi4g1v0114200.7

Overview

Field Value
Gene ID LotjaGi4g1v0114200
Transcript ID LotjaGi4g1v0114200.7
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description V-type proton ATPase subunit H; TAIR: AT3G42050.1 vacuolar ATP synthase subunit H family protein; Swiss-Prot: sp|Q9LX65|VATH_ARATH V-type proton ATPase subunit H; TrEMBL-Plants: tr|G7LFK4|G7LFK4_MEDTR Vacuolar H+-ATPase subunit H, putative; Found in the gene: LotjaGi4g1v0114200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:16516258..16519747) extracted from Lotus japonicus Gifu genome v1.2.

GCTATAGGCTATTGCGCCGCTATAGCGCGCTATTAACAAGCCTGGATGAAACACTTACAAAAGTTCACGAACATGTCACG TTTTCTGAAGTTGAAAACTTAGGCTATACATTGGACTACAGGAGCACTTAAACCAGATGTGCTCATTCATAGACTCAAAT CAACAAGAAGTTTACAAGATGTTTCACATGAAAATAAAAAATGCATGTTAAAATTCAAAGATTTTATGAGGCGCAATTCT ATGATGACACGTATAACAAAATCGCATGCTTGTCTGAGTAAGTGATTATTTTATCTGTAGCTGAAGAAACCTTCTCATCC CACCCGTGGAGTGCCAACTGCTATCAATTGCCTAGCAACACTACTTAAGGAACCTATCGTTAGGTCTTCCTTCGTCCAAG CAGATGGGGTCAAGTTGCTTGTTCCATTGATTTCTCCAGCATCCACTCAACAGTCTATTCAGGTAAGTTTGCCAGATTCC CTAGCTCTGAGAATATGAAGTTCTGAATAAGTAGATTGTTCTTCAGTTGACCCATATGAATTCTGCTAATAGATGCTAGG GTAAGCTGTAAGAATGATGTATCTAGTTATCTTATGACTGTAATTCTTTCTGGAAATCAGAAGCCTTCACTGGATCTATT AATAGATGACTAAACTAAACTAAACAATAACATGCTAAGTTCATCTGGTCAAATACTTACTTCTTTTTTATGAAGAAGAA TGGCAGCTTGGTACCTGGGGATTCCAGATTTGTTGGCTTCTAAATTTACTTATCAACAAAATTATTACTTATACAGTTCA CAGCATCATTGCACTTACGTGGGAAATAAAGGGAAATTAATTGAGAATTTCCTTTGTAACAGCTTCTTTATGAAACATGT CTCTGCATATGGCTCTTGTCCTATTTCGAGCCGGCAATTGAATATCTGGCTACTTCAAGGACCCTTCCGAGACTTATTGA TGTTGTTAAGAGCACTACAAAAGAGAAGGTATAGCTGATTTATTGAGTTTATATTTGTCTCATTTTATCTTTTAAACAAA TGTCGTTCACACGATTCTTTTTCTTAACTGGTAATATTATATTATTAGTTAATAGTTATATGATAGCTGGTAGCAGCATT TGTATTATCTTTTTGTTTTATGCTCATCCATGCCGTTGGTAGCAACTAGCAAGTTGAGGTTTAAAAATTTTTCTGGCATA AAAGTCTAATGTTAGCACAATTGTTTTGCCTATTTTGGTAGGTTGTTAGAGTTGTTGTCTTGACTCTTAGAAACTTGCTT TCAAAAGGGACGTTGGGTGCTCAGATGGTGGACCTTCAGCTTCCACAAGTTGTTCAGAGTTTAAAAGCACAAGCTTGGAG TGATGAGGTGAGAGAATAAAAGACCTACATAAACTTAACTCCTGAAACTTTGCTTGTGCAAATTGAATTAAAATATAATA GGTTGCAGAGTTTAACCACTGGAGGTGATTTTTTTATGTATTTTTTAGCATTGTTGAGGTACTTGCAGTCATAACTTTTT TTCCCTTTTTTAGTATTGTGAGTGCAATCGTGACATCTGATGTAGTTAGGACTTAGGATATTTGCAATGATATTTATCAT TTACTGGATTTCTGTCATACTGTGCATGTGGTACTGATTTGTTAAATACAATTGTCTTTTTACATGTCACATCACGTTAT GCATTTCAATAGAAAAGGAAAAATCTGATGGACTTCTCATAACTCATTGTAATGATAGGATCCTCTCACCCAATAATTTA TTGCCAGTCAAAACTCAAAAGTTTACATATGACTTAACAATGTGGTAGATGAAATTGGATTGCTTAATAATGGTAAAGCT TTGACACATAGTATCCATCAACTCTCTTGCATTTCTTCCATGACAACAACAACTTATCCTTCTCTTGTTTCAATATGCAT TTCCTGCTCAAGCATACATGAACATTCATGCATTTACCAACTTGAATGCACATTGATGGAAGTTGACCAAATACCCTTTC TATCAGCTCTTCTGCATGAATTGGCGTTAGTTATGGTTGATCATTATATATTTCTACTTTGTTCTTGTAATATTGGTATT TTACATGTCTTGATGTTTCTCACTTTATGTTAAATTGCAAATGCAAAATAGTGGGATGTTATTTTAAACTTCAATTGTCA CATTTTCTTTCGAAGATTCTATCTCTCGTTGCTTTCCCAACACTTCTATTGATTAAGCAAGTTTATCATAGGACTTGCTT GAGGCGCTGAATTCCCTGGAAGAAGGGCTTAAGGATAACATCAAGAAACTAAGTTCTTTTGATAAGTACAAGCAAGAAGT TCTTCTTGGCAATCTGGATTGGTCTCCCATGCACAAGGATCTCATATTTTGGCGAGAAAATGTCACCAATTTTGAAGAGA ATGATTTCCAGGTAACTGCTTTATCTCTTCCTTTTTTAATTCGATGCAATTTTTATTTAAATACCCCTAATATTTTAGAC TTCAAAAAAGAAAAACAAAAAACTAAAGGATTTCAGCTAGTGGAGCCTTGTTGTGATAGTATAAACAAGGATAGTGTCTT TCAAGGAAAAGATCGTGTAATTCGATTTTGATTACGGTGATATGACTTTTCAAGTGATAGTTTTTAACATCATTAGGATG CAATGTAATGTCATGAAAATAAACAGTAAATGGACAAATTTATTCTTTATGGAGCCTTATATGTTCACAGCTTGCAGAAT CTCCATTTTCTCATTGACTTAACCCTATTGGCGAAGAGATTAAATCTGTTTTATTGATTTATTTTGTAAATGTTTTGTGG GGATGAGTCTGAAGAGAAGGTATAACAGGTCAAAGATGTCAGGTGGTCCAAAATATAAACAAAAATCTTTAAGGTACTTT TGGAGAACATCCGGAGACATGGAAAGGATCAATTGATTCTGTCTGGGGTCTTGTTGTTTCGATAATATGTTACAAGATTT GTTCTTCTACAAGAAATGAAGACAACATTTGGTTTTTAGTGTCATCTAAAAGAAGCAAAATATGTTGCACTACATTGATT TTGATCAGAAACATTGTAAATGGATTTTAAAATATTATGTTCCTGTGAGGGTAGAAACCTTCGTAGATGCTGTTCCTTCT TGCCATTTAGCAATGAAATAAGAAACACAGAAAAAACACTAGTTCTAGTGCAATTCTTAATTCTTTATCTTCTCTCAAAC ATTCATATATTAGTTATTGATAGTATCTTCATCTTTTGCAGATCGTAAGGGTCCTAATAACAATTTTGGACTCGTCCAAT GATCCAAGGACTCTGGCTGTTGCATGCTTTGACCTTTCACAGTTTGTCCAGTACCATCCATCTGGGCGGATTATTGTGGC CGACCTCAAAGCCAAGGAACGGGTGATGAAACTTATGAATCATGAGAGTGCTGAGGTTACTAAGAATGCACTGCTCTGCA TCCAACGGCTTTTCTTAGGGGCTAAGTATGCAAGCTTCTTGCAGGCTTAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0114200.7) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGGACCTTCAGCTTCCACAAGTTGTTCAGAGTTTAAAAGCACAAGCTTGGAGTGATGAGGACTTGCTTGAGGCGCT GAATTCCCTGGAAGAAGGGCTTAAGGATAACATCAAGAAACTAAGTTCTTTTGATAAGTACAAGCAAGAAGTTCTTCTTG GCAATCTGGATTGGTCTCCCATGCACAAGGATCTCATATTTTGGCGAGAAAATGTCACCAATTTTGAAGAGAATGATTTC CAGATCGTAAGGGTCCTAATAACAATTTTGGACTCGTCCAATGATCCAAGGACTCTGGCTGTTGCATGCTTTGACCTTTC ACAGTTTGTCCAGTACCATCCATCTGGGCGGATTATTGTGGCCGACCTCAAAGCCAAGGAACGGGTGATGAAACTTATGA ATCATGAGAGTGCTGAGGTTACTAAGAATGCACTGCTCTGCATCCAACGGCTTTTCTTAGGGGCTAAGTATGCAAGCTTC TTGCAGGCTTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0114200.7) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVDLQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGNLDWSPMHKDLIFWRENVTNFEENDF QIVRVLITILDSSNDPRTLAVACFDLSQFVQYHPSGRIIVADLKAKERVMKLMNHESAEVTKNALLCIQRLFLGAKYASF LQA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10698:SF2
1 163 163 1.5E-95 –
PANTHER
PTHR10698
1 163 163 1.5E-95
IPR004908
SUPERFAMILY
SSF48371
1 153 153 1.26E-64
IPR016024
Pfam
PF11698
40 152 113 1.1E-39
IPR011987
Gene3D
G3DSA:1.25.40.150
54 155 102 6.2E-32
IPR038497

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000221
Cellular component Vacuolar proton-transporting V-type ATPase, V1 domain The V1 domain of a proton-transporting V-type ATPase found in the vacuolar membrane.
Subterm of
Part of
GO:0046961
Molecular function Proton-transporting ATPase activity, rotational mechanism Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
Subterm of
GO:1902600
Biological process Proton transmembrane transport The directed movement of a proton across a membrane.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0114200.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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