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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0115400 |
| Transcript ID | LotjaGi4g1v0115400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT4G36730.1 G-box binding factor 1; Swiss-Prot: sp|P42774|GBF1_ARATH G-box-binding factor 1; TrEMBL-Plants: tr|C6T9L6|C6T9L6_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0115400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16685961..16692590) extracted from Lotus japonicus Gifu genome v1.2.
CAAACCTAATCCAATCCAGTGAGACATGGACAGCCCACAGCTGTAACACTCTTCTTCGCACGTGTCACCCCACAAGCCCT AAACCCAATCCAACTCACACACACAAACACACACACTTTTCTTTCTTCTATTCTATTCTATGTGAATACATTGCATACGC GTTTGTTTGGTTTGGTGTTTCAATTTTCAACCCTCCTCAACTTCCAACTTTCCCAAACCCTTTTGATTATTCAGCAGCAG CACTAGTCTCCACATCAACACCGACACACACACTCACTCACACCACACCCTTCTTTTCCACATGGATTTTGGAAAATAAC AAACCAAACATTTACACATACATATTACATAGTATTGTATCTTAAAACCTGAAACTCAACAACAACAACAACAACAGTTT ACAAGTCCAAACCATATATTACTAGTATTATAGACTTTGATAACCTCCTTGACTCCTATCCCAGTTGGACTTTCACTTCC ACCTCACCCTTTTCTTTCTCCCACCCTTTTCTTCAAGACTTTGAAAACAGGTTAGCCTCTGTCTCCTTCTCTTTCTCATA TTTATTTTTTCCTGTAAATTAGTACTATATACCAAATCTATGAGATCCCTGTTTCAGCTCTATGCTTTTGCTTTGCTGAA TTAGTGTTTATCTTTTTTGTTATTATTTTTGGGAGAATTTCAATTCTCTGCAGAGCTATTGTAGTGTGAATTCTTGCTTG CTCTTGTTGCCTTGTAACTTTGTTAAACCTTATTGTACTAATAATCTGATTAATGATAAAATATTTCCAGAGAGTAATTG TTGCTTGTAAAGGAATTTGTTTTTTGCTGTGGCATCCTCTGAAAAACAAAAGGTAAGGTAATTGGAAGGGGACTTGCTAG TGCTTGTGCTTCCTGTGATTTTAAACCAGGGAAACCATGGTATCAATTTACCAAGATTTGTCTTTGATATGGGATTAAAA GTAGGTTTTAGTTTGGTTTGGTTTGCTTATGTTAAATTGAAAGTGAATTAACATATGGTGTGATAAAAATGTAGTGTTTG TCTATGGATAAGAACTTAGAGTAGACACGAAGCAGGGAAATTGGCCTTTTTTATTAGATGGGGACAAAGTGAGGACCCGT TTGGAAGGGCTTATATTATAACATAAGTGTAAGTTGTTCAGATTAGTTTATGAATACGATCTTATGCTTATTTATAAACT ATTTTCCGCTTATTTTAATAAATTTCCCAAATTAGCTTTTGGATTAGCGCTTATGTGAAACGCACGTTTATCCAATCACA CCCTAAATTGTATCGGCGAAAATTAGAACTGAGAAGGAAGTTTTGTTTATTTTCAATCTTAAACCGCACTGGCTTCATTT CACCTCTGCTTTGAATAGAAAAACAGAATGGTCCAGAAAAATAAGAACATCGGAATGATGTCAAAGCAAAGAATGACAAT GCGCAGATATACAACAGGCTTGTTAATAACGCGCTATAGCGGTGCTATAGCGTAGCGCCCTGAGGGTTCGCTGCTACTCC ACTATTCACCGCTATTTGCCGCTATTGTCCGCTATAGCGCCGCAGTAGCGTTTTTTGGGCTTGCCGCTACGCTACGCTAT CCGTCATTAACAACCCTGATATAGAGTAGAACATTCATCATTTAATGATCTTAAACACGATTGTCCCTTGATAAATAGCA GTGTATTAAAATTTTAGCTTCACATCACTGAAATTGCACTTATGAATATAGTTTGTAGTTAAAACATCATTATGTATTCA AGGCACGTAGCTCAAGTTGCTCAAGTCCTAGTGAGTATTGCTTAATCCCGCGTTGAAATACCTGCCCGCACTTATCTCCA ATTGCCACCATATACACCTCTTATTTTTACCACTTACCACCTAAAAGAAAAAAAACTGTTAAAAATGCTTGTTCATTTTT ACTTGTTCATTGCATTAGTTTTCTGGTAGTCTTGTTCTCAAGTTATTCAGATAAGTTACCAAGAGCATACATTTTGCTAA TCAAAATGGTTGGTTGGGTTTTGGCTAGAGCAGAGAAGTGGTTATTAAGTAGAGAGAGATAAATAATTTAAATTTTATCA ACAGAAGGTCAGGCTTGTGACCTTCCTGGATGATATAAATTTCTTCCATTGTCAAAGACAAAAAGATAAGTGCTTAATTT TTTGTTTGGAGGACGAACAGCTCAAAATAATATTTTAAAATAATTTACTTTATAATTTTGCATTAGATTTAATAGTTGCT GCTATTCAATTTGTGATATTACTGATATGTAATTATATTTCAGTTTTCAGTGTGTTCTTTTCTGACATGAGTATCTGATC AAGTTGTTCTTATGCCCTCCACAGCTATCACTTTCTGATCATATATAGATTTTTTTGTTTGGTGGCACTGAGCGGACAGC ATTTCGAAACTGATCTGCATGGGAACTGGGGAAGAGAGCACAGCTAAACCTTCTAAGTCATCTGTGTCAACTCAGGTTTC TCTCCCAACCTTCCTGCTTTTTTTTTCTTCATCTTGTCCTTTCTCCTATCTCCCTTTATCATCTGTTTTTATATGAACAG GAGATACCTACAGCACCATCATATCCAGATTGGTCAAGCTCTATGCAGGTAGTGGAATATATGATAGATGTGTTTCATCA GGCTTTAATTGGAGCTCTTCTCAGCTTCTGCATAGAAATAATGCTAGTAACTAATGAAAAGCTTCATTTTTAGGCCTATT ATGCTTCTGGAGCCGCTCCACCTCCCTATTTTGCCTCAACTGTTGCTTCCCCAACTCCCCATCCCTATATGTGGGGAAGC CAGGTAAGTTGTAATTTGGGATATTTGCACTTGTACTCTGTGGAAGCGAAGCTTCTCATTCACGGTTTTGTTGATTTTTC CAGCATCCTTTAATGCCGCCATATGGGACTCCCGTCCCGTATCCAGCTTTATACCCTCCTGGCAATATCTATGCTCATCC TGGCATTGCAGTGGTAAACCGCTTTCTCATTCTCTAATTCACGCATTTCCTCTATGCCTAGGTTGAAAATTTTAAATTTC TCATCTGCTTTATATATTCACATATTGTAAGGCACTTTTTTGCTACCTTTATCATAGTTTGGCAATTTAATTCATAATCT TCTTTTTTTCTGTTACTTTTTTGTTTTTTTTAATCATTTTGCTAGACTCCAAGTCCTATGCAGCAAAGTACTGAGATTGA AGCGAAGGGAACTAATGGAAAAGATCGAGATTCATCCAAAAAATTGAAGGGAACCTCTGCAAATACATGTGCCAAAGCAG GGGAGAGTGGAAAGGCCGGCTCAGGTTCAGGCAATGATGGCAATTCACATAGGTTTGGCAAACCACTAGTTAATCTGAGA TAATTTTTCCTCTCCAATTTGCTTTCTTAATATGGATTTTTATACAAAATAACTTGTTAAACAGTGCTGAAAGTGGTTCA GACGGTTCATCAAGCGCTAGTGATGAGAATACTAACCAACAGGTATATAGTATATTACCATCTATACATGTGCTGACACT TTTAGAATATATAATAACCTTACTTCTCCCCTTTTTCTTTTACAATTAGTTGTCTTTTAAACTTTCATATTTACAACAAA AGTCTCAATTAAATTGGTTTAATTAAAAGCATTTTGATCTTTTTCCTATTTATCTTATGCTTTTGTCTGATGACTTAGGA ATCAGCTACAAACAAGAAGCGAAGCTTTGACCAGATGCTTGTTGATGGTACGTATCACCCGCATGCATGACTCTCTCTTT CTCCCCCGCCCCTCTGTGTGTGTGTGTGACTGAAATAAGGTAGTGTTTCTCTGAATATTTTCAGGAGCCAATGCACAGAA CAATTCTGCTGGTGCCATTTCTCAATCCCCTGTGCCTGGACAGCCTGCAACTAATCTTAATATTGGAATGGATTTATGGA ATGCATCTTCTGGCGCCCCTGGAGCTGTTGCTACTTCGGCCATAATGGGACGTGAGGTTGTACTTAGTGAACAATGGATA CAAGTATGGACCACACAGTTACTTTCTTAAAAATATTAAGCATGTATTAATTTTTATGGTCAACATTTTAGATCTATATA CTTACGGATATGAAAAACAATTCTTTTGTTGATACCGCACGTAATGGGACGTGAGGTTGTACTTAGTGAACAATGGATAC AAGTATGGACCACACAGTTACTTTCTTAAAAATATTAACCTTGTATTAATATTTATGGTCAACATTTTAGATCTATATAC TTACGGATATGAAAAACAATTCTTTTGTTGATACCGCACATCTTACTTATACTTCTTCTTACAGATGGACATCAATTATC ATATTTCCAGCATTGGACTCTTGTATTCTTTACCTGACCAAACAATAGTTTTCCTTAGTCCTTGCTTCATGTAACTTCCT CTGACCCCTACATTGCTCCTCTTGATTTTGGTAGGATGAACGTGAGCTAAAAAGACAGAAAAGAAAACAGTCTAACCGAG AGTCAGCTAGGAGGTCAAGACTACGCAAGCAGGTGACTTTCTAATTTATCATTCATACTCTTTTGTTATGCGAGAGACTG AGCCATTCAGAACTTTCCTTAATATCTTGATGTTTGGAGGGTAGAAGCTATATTATTCTATACATAGATGTTTGTGTGTG TGTGTGTATTTTCGTAGGTATAAAGAAAATCTATTGAAGTCTTAATAAGGGCATCAATTATCAAGATATCTTACTATATA GATATCTATATATGTTTGTTAACACCGTACATCTTACTTGTATGTATTATAAGTTTGGATTCATGTGTGATTTGAGCACG TGTAAAGAAAGTTCATACATAGAAGTTTTAACAAGGAAAGAATATGAGATAAGGGATTGTTGAGAAGTTAAAGAGAAATT TTAAGAAAAACTTACGACAAACTATAAAGAAGGATTTCATTAGACTCCAGGCTGGACCTAACTCTACCACAAAAGCTAGC TAGGATTTCCCAGCCATTTATAAGTTCTTCATTAGCCATATCTCTTGATAATGTGGGACTCAAGTCTCAACACCCCCCTC ACGCCAGGACCGAGCATTTGGAGCGCGGAGGTCATCATTAGAATGCCATATCCATCGTGGGATATCTACTGGCCGGGTAT GGCCAATGCCCTTATCCGTATCATGAGATATCTCTAGAGCGGTCAAGTCAGCGGGTGGACCAATAATAACTCTAGGGTAG ACTCTGATTCTATATTAGAATTTGGGCTGGCTTAACTTTAGCTCAAAAGCTAGCTCTTGAGGATTGCCCAACCATTATAA GTTCTTCATTAAGAATGTGGGACTCAACAGATTTAGATGAAATGGTTTTTCACAAGACATGATTTATGAGAGGACATCGT GTCATCTAATCTATCTAGCTAACCCACATGGTTTTTCACATTTTCGTTTTTAAATATTCATATTACCCTTTTACTAAAGA CAAAAAATGATGTGCGTTTGTATTTCTTGTGTCAACAAGGCTGAGTGTGAGGAGTTACAAAAGAGGGTGGAAATGCTGGG AAATGAGAATCAAACTCTTAGAGAAGAGCTCCGGAAACTTTCTGAAGAATGCGAGAAGCTTACATCTGAAAATAGTTCTA TTAAGGTAGATTTCTGTTATCATTCTGCAATTTAGAGTTTGTCACGTTACAATTTTCAAATCACAACCTTAGATTTTATT ATCTGAAACACAATTGCTTTAAACAGGAAGAGTTGGACCGGTTGTGTGGGCCAGAAACAGTTGCTAACCTTGGATGACAC AGAAACAAGCCATTACTTAGTGTCTGTCTCTGAGGGCAATAGCAAAAATTGGTAGTCCTAAGAAGAGTTTGCAGCTGGAA TCTTGTTATCAATCTCTTAATTGAGAATAGGATATAATGTTTTTATTGTTTTACTAATTTATACCATTAACCCCTCAATT GTAATTGCCCTTGTGATTTATACGTCATTTGTAATATTTAACCGCGCGGGAAAATAGAAAAATGTAGGCTACTCGAGCAC TGCCATTTAGAATTCAGTTTTGCTACTGATGTTGAGAATCCAGCTTCAACTTTCCCATTTCTCAGCTTTCAAAGCCCTGT TTGTTGGTGTTAACTGTGGAATCATATTTTTTCATTCTACTTGTTGACAAAGCAGGGCATAACCTTTGGACTTTGGTTAT GGCAATTCACTGTGCTTGAGGTCTGTCTAACTTGCCAAATATACCCTGTTCTCAGCGTTTGAACTACAATTTGAGCCAAA TTTATTTTAATTTCTAAAGTATCTGCTGGACCCCAACGTATTTGATGAATAAATACTTACAATTGCAGATAATTTTGTTA TCTGAATCTAATTGTCAGCCGGAAAAAGATACTAATAACTGTAACAATTTGACACATTTTGTTGTTGGAAGGAAACTCTT TTTCTTTCTCTCAGGGGGTTGGGGAGGGAGATATATTCTTTTCACGATTGTAAAATTGAATTCGGTTTGGTTACAGTATT TGTATCTCAAGAGTCTTTCGATCTCTTCTTCGATTTTCGACACCACTTTTAGTGCAAACCTCCTTGGCATTTGTTTTACT GGTATTATATATCTGCTTGAATTGGTAGTTTCAACTCTACCAAATCTCGACTCGAACCCGGCATCTCATC
CDS sequence (LotjaGi4g1v0115400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACTGGGGAAGAGAGCACAGCTAAACCTTCTAAGTCATCTGTGTCAACTCAGGAGATACCTACAGCACCATCATA TCCAGATTGGTCAAGCTCTATGCAGGCCTATTATGCTTCTGGAGCCGCTCCACCTCCCTATTTTGCCTCAACTGTTGCTT CCCCAACTCCCCATCCCTATATGTGGGGAAGCCAGCATCCTTTAATGCCGCCATATGGGACTCCCGTCCCGTATCCAGCT TTATACCCTCCTGGCAATATCTATGCTCATCCTGGCATTGCAGTGACTCCAAGTCCTATGCAGCAAAGTACTGAGATTGA AGCGAAGGGAACTAATGGAAAAGATCGAGATTCATCCAAAAAATTGAAGGGAACCTCTGCAAATACATGTGCCAAAGCAG GGGAGAGTGGAAAGGCCGGCTCAGGTTCAGGCAATGATGGCAATTCACATAGTGCTGAAAGTGGTTCAGACGGTTCATCA AGCGCTAGTGATGAGAATACTAACCAACAGGAATCAGCTACAAACAAGAAGCGAAGCTTTGACCAGATGCTTGTTGATGG AGCCAATGCACAGAACAATTCTGCTGGTGCCATTTCTCAATCCCCTGTGCCTGGACAGCCTGCAACTAATCTTAATATTG GAATGGATTTATGGAATGCATCTTCTGGCGCCCCTGGAGCTGTTGCTACTTCGGCCATAATGGGACGTGAGGTTGTACTT AGTGAACAATGGATACAAGATGAACGTGAGCTAAAAAGACAGAAAAGAAAACAGTCTAACCGAGAGTCAGCTAGGAGGTC AAGACTACGCAAGCAGGCTGAGTGTGAGGAGTTACAAAAGAGGGTGGAAATGCTGGGAAATGAGAATCAAACTCTTAGAG AAGAGCTCCGGAAACTTTCTGAAGAATGCGAGAAGCTTACATCTGAAAATAGTTCTATTAAGGAAGAGTTGGACCGGTTG TGTGGGCCAGAAACAGTTGCTAACCTTGGATGA
Protein sequence (LotjaGi4g1v0115400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTGEESTAKPSKSSVSTQEIPTAPSYPDWSSSMQAYYASGAAPPPYFASTVASPTPHPYMWGSQHPLMPPYGTPVPYPA LYPPGNIYAHPGIAVTPSPMQQSTEIEAKGTNGKDRDSSKKLKGTSANTCAKAGESGKAGSGSGNDGNSHSAESGSDGSS SASDENTNQQESATNKKRSFDQMLVDGANAQNNSAGAISQSPVPGQPATNLNIGMDLWNASSGAPGAVATSAIMGREVVL SEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQKRVEMLGNENQTLREELRKLSEECEKLTSENSSIKEELDRL CGPETVANLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 93 | 93 | 1.8E-30 | ||
| PANTHER | 1 | 329 | 329 | 4.1E-136 | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 329 | 329 | 4.1E-136 | – | |
| MobiDBLite | 84 | 213 | 130 | - | – | |
| MobiDBLite | 141 | 213 | 73 | - | – | |
| PRINTS | 247 | 263 | 17 | 8.2E-5 | ||
| Pfam | 248 | 310 | 63 | 8.1E-21 | ||
| SMART | 248 | 312 | 65 | 8.3E-22 | ||
| ProSiteProfiles | 250 | 313 | 64 | 13.507 | ||
| MobiDBLite | 251 | 272 | 22 | - | – | |
| SUPERFAMILY | 251 | 307 | 57 | 1.13E-11 | – | |
| Gene3D | 252 | 305 | 54 | 4.0E-13 | – | |
| CDD | 253 | 303 | 51 | 3.2547E-23 | – | |
| ProSitePatterns | 255 | 270 | 16 | - | ||
| Coils | 261 | 316 | 56 | - | – | |
| PRINTS | 265 | 285 | 21 | 8.2E-5 | ||
| PRINTS | 285 | 302 | 18 | 8.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0115400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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