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LotjaGi4g1v0116300.2

Overview

Field Value
Gene ID LotjaGi4g1v0116300
Transcript ID LotjaGi4g1v0116300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description U1 small nuclear ribonucleoprotein 70 kDa; TAIR: AT3G50670.1 U1 small nuclear ribonucleoprotein-70K; Swiss-Prot: sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa; TrEMBL-Plants: tr|A0A151QVV9|A0A151QVV9_CAJCA U1 small nuclear ribonucleoprotein 70 kDa; Found in the gene: LotjaGi4g1v0116300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:16838446..16844827) extracted from Lotus japonicus Gifu genome v1.2.

TTAGTTAAAATTTGTTTATAAGTAACTTTGTTAAGAAAAACACTCCTAATCATATTATTATTATCCATAATCCTTTTTCA TCTCTTCAAACCTCCAAAACGTTTTCATCGGTGCTTGAAAATCGCGTTTCACTATAAATATCCCTGCCATTCTCCCTCTA GGGTCGAGAACCCGCATGCGATTCAGTTCGGATCTATCGAAACCGCTTCACCATGGACAACGATCCTCTCTTGCGCAACC AGAACGCCGCCGTGCAGGCCCGTGCCAAGGCTCAGAACCGCGCCAACGTCCTCCAGCTCAAGCTGGTTCGTTCCTCTCGC TTCTTCCTCTTCCATTCGAACTCCGATTTCTCATTTGCCCTAATTTGAACTAGATTTTGTTTATCTTAACCGAAGTTAGG GTTTATCAATAGTTTCGATTCGTAACCCTAGATTGTAGATTTGGTGCAAATTCATGTTTATGTGATGTGTTTGTTGCAGA TTGGACAGAGTCATCCTACTGGTCTCACTGCGAATCTGTTGAAGCTCTTTGAGCCGAGGCCTCCATTGGAGTATAAGCCT CCTCCGGAGAAACGAAAATGTCCTCCCCTATCAGGTGTTTGTTTGATGAGTGTTTATGTTTCGGTTTCGCGCTGATTTTT ATGCAATTTATTGTTGATTGTTTATGATTATCGATTCGAATGTGAATACGATATGTTTGTTTTGTTTTTTTGAAGGGATG GCGCAATTCGTGGGTAAATTTGCTGAGCCCGGTGATGCTGAATATTCGCCTCCTATACCAGTGGCTGAAACTCCTGTAAT GTTCAGTTCCTTTGTGAATAATTTCATGGGGATTATTATTGTTATTATGATTGTGACTTTGTTGTGCATATGTTCATAAT TTTATGTGATTGTTGCGTCTGGCGTGTCTGTGGAGTGGAGGTTTGGTTAGATCTTAGATGCAATAGTTGAGTCGACTTCT CCCATTTGCATGTCCTGATTTAGTTCTTCGAGTTATCCGTGTCTGTAACTATTAAATTGTAAGTAATATTGGTGCTGAAC AATGTATGCATGTGGTGTGGTGAACAAAAAAATTCTTCTATTATATAGACGTAGATAACATCTAAACTTTTTTTATAGAT ACATTTGTTTCGTTTGTCATGTTTGTTTCGTTTGTCATGGTGTTAATAAGTTTTTATCTTTGATTATGATTGCTGAACTC TAGTCATGTTTTGTCTGGGGTAAGACTTTGCAAACTAAATGTTCAATTAATAGTCCTTGACTGCTTGGGCTTTCATGTGG ACATGTGGTACTAATCTTTTTTTTTTGACAGCACATGTGGTACTAATCTGCTCTAAGAGAATGTTTGTCTTAATATTCCA TGGTTCATGAATAGCAATTAGGTAGCTTGAATTCTGCTAAATATTAATCAGAAGATATAATTACTATTTTCTTTTCAGTC TTTACCAGGTTTCATTTTGTTTTCGAATTTATTTGAAAGTGTGGTTATTAATTTATTATAATGTTTAGTAGACAGACATA ACTCTGCTACTTATTGAAATTCTGTTCCTTTTCATAGAGCTAATATATAGTTAATGACAGTTGTGAAATAGTTTAAAAGT GTCACATCGGTTAATGCATATTTTGTTACATTTTGGTGAACTCAGGCACAGAGGAGAGAAAGAGTCCACAAGTTAAGACT TGAGAAGGGAGCAGCAAAGGCTGCCGAGGAGCTTGAGAAATGTGATGACTCATTTATTGTTGTGTAACTCTTAGTTCATA TTCGTGGATTTATTTTCTTAACTAAATGTTTTAATATCTGGTCCAATGCAGATGATCCACAAAATGACCCGAATGTATCA GGAGATCCATACAAGACATTGTTTGTGGCCAAACTTGTGAGTTATATATTCCTATTTATTAACTCTAGCACTTTTGATTG CTTGTCCGTATCTCATTGATGCTGTGTTCTGACAGAGTTATGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCA TATGGTCCAATCAAACGGGTAGGTATTTTGAATATACCCCAAAAGGGTTCGGTAAGCGTATCTTATATGTTTCTTCTATT TGACATCTTTACATACAAGTTAACCTCCAAAATGGATTTTCATATTTAACAGTTTCCATGTGTACACAAATCTTGAAAAA CAAAAGATTGGCTTATTTTAAGATAATATATGCTTTAACCATTTTATTTTTCTGCTGAAAAAATTTTCTTGTAATTTTAG CAGTTTTCTTAACTAACTAGCCTGTTGTAAAGTCAATCAGTTATGCATAATCCGATCATTCCAAACATTCAACAGTATAG GTATAGATTATAAATCTTACTAATTTAACTTGTCATTATTGAGTGGCTTTGAAATGGTTCAACTGCATTTAGTTGCGCCA TCAATTTTTATTTATTGGTTTCTTTAGGGAATTCCCACTTAGATCCATTCCACACTTAATATATGTGGATAGGAGATCTT AGGGCTCTGGGTCTCTAGGAATTATTTTAGCTGCAAGTTCTGCATCTCATTACACATCCCTGGTAATGGTTGATCATCTG TTCTGCAAATGGTAAATGATTATCAAATTTCAATCAAACCCGACTTCCATTCAAGCGCTTCCTCTGTACGGTATTTTAGT TGGGCAGAGCTATGATGCAAAATTGTGCATTTGGCCTTGTTTTCAAGCAAGAAAAGGGGACTGACCACTTCTGTTCTTTT CCTGCGCTGGGTAAAATATGTTGGGAGTATTGCAATCTCTTCCTCTTTTGTTTAAATTCGTAGTTAGCATACTTTTGATG TTGCTAAAACTTTATTTTTGGCTTTAAAGGCTATCAAAACCAAATCAGCCATTGAGAAGATGTTATGGTATTTTCTATAT TACCCACAGTTGTTTTCATTTTATCAATTTAAAAATAATATCCCTGGTAAGGGGACGCTAGTCAACAACTGATAATTGGG CCCAAATACCTCCGTTTTTCTGCAACTAATGCTGGTGGTGATGCATCTCGCGATGGGAGCTGTGTGATTTAAAGGTGAGC ACGGCTAATTAGGCATAGTGCCTGTCTGCCGTGCCATTTAGGATTAGTGTTAGTATTTAATTTTGGTTGTACTTACAATG ATTCTGAGGTCAGATTGTGAGTGCATTTTTTGTTAATTTCTTTTGAGCTATAGACCAGAATGTTTTCTTCTGACTATTTA TCCTTTTTCAAATTTCTTATGATTTAGGTTCGGTTGGTTACTGATAGTGAGTCAAATAAGCCCAGAGGTTACGCATTCAT TGAATACCTGCACACAAGAGACATGAAAGGTTGGTAGTGGTTTAGTGTGAATTGTCTGATTATAATATATGTATATGACT GACTTTTTTGTCACACTTTTCATTTATTATGCAGCTGCTTATAAACAAGCTGATGGGAGGAAAATTGATGGTAGAAGGGT GCTCGTGGATGTTGAACGCGGGAGGACTGTTCCAAATTGGCGACCTCGTCGTCTTGGTGGTGGGCTTGGTACAACTAGAG TGGGGGGTGAAGAAGTTAATCAGCGACATTCTGGGAGGTAAATGGTCTATAACTTCAATTTTGTGATAGCATAGCACTTC ATTCATTACTTATTTCAAACCCCATAGTCTTTTATAGATTGCCTGAAATAGAATTACAACTAGAAGTGAACACTAAGAAC ATTGTTAATTATTATGACATTATTTCTTTTTACATTTATGTGTCATGTTTGCTTGAGAATTTGAAATATTTGCAACAAGA AACCACCTGGTGTTCTATGATTCTTCTCTAGTACGGAATTTTGTGAACCTTTCTCAATTTCCTTGCATCTATGAGTTGGA TCTTTGGCAAAAGGTTATGCTTATGTGTTGGAGCTAGCTGACAAATAGAACATCGGATGAAAATAATTTCTTGAGCACAC TGATTGTTGTGACTTCTGTGCACCTTAAATTGCAAATTGTCATACTTTGTCTTCTTTACTGTTGTCTATATAAATTTTGT TGGATGCTTCCTTTGTTCTTACTATGGAGGAGCATTCTGACTTGAGTTAATTTATTCAGGGAGCAGCAGCAATCTGCACC TTCTCGTTCTGAAGAACCCAGAGTGCGGGAGGATCGAAATGTCGATCGGTAAGAATTCCAATGTGTTTCTTCAATTTTGA GTAGTTAATTGGTGTTGGTACTCACAAATAACTGATCATACAACAATTACTTGATAGCAGGGTGCTTTGGTTTCCCTGCA TTAATAGGATTCAAATTAAGTTCTGTTATTCAAAATTATTTTTAGTCATTTACTGACTGCTATTGACTGTGTTCATTTTA GGGACAGAGAAAAGTCACGTGAAAGAGTTAAGGACAAAGATGGAGAACGTGAGCGATCACGTGAACGGTCCAGTGATAGA GCCAGGGATCGTGATCACAGAGAGGATAGGCACCACAGAGACCGGGATAGGACTAGGGACAGAGATAGGGACAGAGAAAG AGAGAGAGACCGTGGACGTGACCGAGATAGAGGACGTGACCGCGATCGTGGTCGAGAGCGGGAACGTGATCGTGATAGAG GAAGGGATCGTGATCGGGACCGAGAACATGATCGTCATCGTGAAAGGGATAGGGATTATGAAGCTGGGGAAACTGATAGG GGACGCTCACATGATAGGGAGGTTGATTATGATCATGTTGAACCTAAACAAGAGAAGGATCGCCGTGGTGAAAGAGAGCG TGACTTTGAACCTGAGGATGATCGTGAGTACTACAACCAACCGGTGCATGGACGTAGGCATGCAGATCCTGACCATGATC CTGATCACTATGGACACTATGGGCATCACCGTGGTCGGGGGCAGTATGATGATGGAGATGAGCACGGTGACCATTACAAT CAATATCATGATCAGGATAGGATGGAAGATGACTATGGCACTGAACGAGCAAAATCTGAATCACGTGAAAAGGAGAGAAG TCGTGATGTGGACCGTGAAAATCGTCGCCCAGAGAGGTCCCATTCCCGGGAGTTCGATTACTGATTTCTATGAACTTGAG CACAATATTTCTCAAATTCACTGGTAAGATTCATGGCATACATTTTAGTATTCTATTTGGTTATTGTTGATTCTTGCCAA TCAGGCTGTAAGTTCTGGATTGCTTCTTTGTAGCTGTTAATGGATCAGGGCATGAAGAGATCAAAACACTGTCCAAAAAG AAATTACATGTTGTGGCGGCCATCCATATTTGATGTTGAAAGGTTACCGCACCAGCTTTGGTGTTCTGTTTCTTGATATG GACGTGGACTACTAATATTTGTCTTTGATGGTTTTGTTTTCCTGAGACATTATATTTTATTTTTCTAGTTTTTGTGGGCA CAATTTCTGGGATTCAAGTTATCGTTGGTCTATTGATATGCTTGGAACTGTATTCATTTATATCAAGTATTTCTTACATT ATAATGTTAGCTGATAGACCCTTGGTTTATTAGAGGTTGAGTAGTGTCGGTGTTTTCTGGTTATTAATTTTTACTTGCCT TAGCCTCTTAGAAAGCAAAATAATTGATGAAAATATCACTTAACTTTCCAGATTTTGCCTCACTACTCCTGCCTGTGTCA AACTCAAATTTTGGGTTGCCTTGCGATTGAGTTCTATCTCACATTTGTTCTGAGATAGTGTAATCATTGCCTGTGTAAGT ATGAAGTATTTTCAATCTAAAATAGGGTTGAGTCCTTAAGAATCGTGCTCTTGCTGGAGGTGCTGCAAAGTAAAATAATG TTGCTAGAGTTCTATCACGTTTGGTTTACTGATGGTGCCATGTGAATGTTTGTGCAACTGTGCGGTAATGTTAAGCTTTG CAAATTATCTGCCAGAGAATTTTGTTGGATTATAGGCATGATTTTCAACGATTTTGTTTTCTATTTTCCTTTTGCTACAA GTTCATTTCCATCATTTTGGGTGAGGTGTGCTATGTGGGAGAATTACAAGCCAATTTCAGCATGGCTATTGGCAGGTTTG CTTGCAAAGAGGTTTCTACAATTTTCAATCTTAGGATAGTTTCTCTTGCTGTTTTTTTTTCTTGCAACAAAAATAATATT TTCAAGGTTTCTTAAGTTATGAACATATGTACTATTGGGAGCTTTATTAATTAAGAAAGCAACTGCTACGGTAAATTGAC TAATTCTTTCATTGGCAGCGTGATCGGATGCAAAAACTATGAAAACTAAAGAAAAAGCCATAACAAAAATTTTGGGACCC AAGAGCGAGCTCAATTTTTAATTTTGTTAGTGATGGGCAATTCAACCATTCAAGTGATTAAACGTTGAAGAAGCCAGAAA CAAATGAAGTTACCATGAAGCTTCGTAGCTTTGCTATGTGCTATGATGCCGGTTTAGCAAGG 

CDS sequence (LotjaGi4g1v0116300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACAACGATCCTCTCTTGCGCAACCAGAACGCCGCCGTGCAGGCCCGTGCCAAGGCTCAGAACCGCGCCAACGTCCT CCAGCTCAAGCTGATTGGACAGAGTCATCCTACTGGTCTCACTGCGAATCTGTTGAAGCTCTTTGAGCCGAGGCCTCCAT TGGAGTATAAGCCTCCTCCGGAGAAACGAAAATGTCCTCCCCTATCAGGGATGGCGCAATTCGTGGGTAAATTTGCTGAG CCCGGTGATGCTGAATATTCGCCTCCTATACCAGTGGCTGAAACTCCTGCACAGAGGAGAGAAAGAGTCCACAAGTTAAG ACTTGAGAAGGGAGCAGCAAAGGCTGCCGAGGAGCTTGAGAAATATGATCCACAAAATGACCCGAATGTATCAGGAGATC CATACAAGACATTGTTTGTGGCCAAACTTAGTTATGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGT CCAATCAAACGGGTTCGGTTGGTTACTGATAGTGAGTCAAATAAGCCCAGAGGTTACGCATTCATTGAATACCTGCACAC AAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGGAGGAAAATTGATGGTAGAAGGGTGCTCGTGGATGTTGAACGCG GGAGGACTGTTCCAAATTGGCGACCTCGTCGTCTTGGTGGTGGGCTTGGTACAACTAGAGTGGGGGGTGAAGAAGTTAAT CAGCGACATTCTGGGAGGGAGCAGCAGCAATCTGCACCTTCTCGTTCTGAAGAACCCAGAGTGCGGGAGGATCGAAATGT CGATCGGGACAGAGAAAAGTCACGTGAAAGAGTTAAGGACAAAGATGGAGAACGTGAGCGATCACGTGAACGGTCCAGTG ATAGAGCCAGGGATCGTGATCACAGAGAGGATAGGCACCACAGAGACCGGGATAGGACTAGGGACAGAGATAGGGACAGA GAAAGAGAGAGAGACCGTGGACGTGACCGAGATAGAGGACGTGACCGCGATCGTGGTCGAGAGCGGGAACGTGATCGTGA TAGAGGAAGGGATCGTGATCGGGACCGAGAACATGATCGTCATCGTGAAAGGGATAGGGATTATGAAGCTGGGGAAACTG ATAGGGGACGCTCACATGATAGGGAGGTTGATTATGATCATGTTGAACCTAAACAAGAGAAGGATCGCCGTGGTGAAAGA GAGCGTGACTTTGAACCTGAGGATGATCGTGAGTACTACAACCAACCGGTGCATGGACGTAGGCATGCAGATCCTGACCA TGATCCTGATCACTATGGACACTATGGGCATCACCGTGGTCGGGGGCAGTATGATGATGGAGATGAGCACGGTGACCATT ACAATCAATATCATGATCAGGATAGGATGGAAGATGACTATGGCACTGAACGAGCAAAATCTGAATCACGTGAAAAGGAG AGAAGTCGTGATGTGGACCGTGAAAATCGTCGCCCAGAGAGGTCCCATTCCCGGGAGTTCGATTACTGA 

Protein sequence (LotjaGi4g1v0116300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDNDPLLRNQNAAVQARAKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLSGMAQFVGKFAE PGDAEYSPPIPVAETPAQRRERVHKLRLEKGAAKAAEELEKYDPQNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYG PIKRVRLVTDSESNKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVN QRHSGREQQQSAPSRSEEPRVREDRNVDRDREKSRERVKDKDGERERSRERSSDRARDRDHREDRHHRDRDRTRDRDRDR ERERDRGRDRDRGRDRDRGRERERDRDRGRDRDRDREHDRHRERDRDYEAGETDRGRSHDREVDYDHVEPKQEKDRRGER ERDFEPEDDREYYNQPVHGRRHADPDHDPDHYGHYGHHRGRGQYDDGDEHGDHYNQYHDQDRMEDDYGTERAKSESREKE RSRDVDRENRRPERSHSREFDY 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 13 394 382 1.3E-182
PANTHER 13 394 382 1.3E-182
Pfam 39 127 89 6.1E-20
MobiDBLite 50 69 20 -
MobiDBLite 80 101 22 -
Gene3D 123 248 126 1.3E-36
SUPERFAMILY 124 236 113 6.45E-29
CDD 135 225 91 3.08693E-53
ProSiteProfiles 136 214 79 18.001
SMART 137 210 74 1.6E-22
Pfam 138 207 70 3.4E-18
MobiDBLite 218 502 285 -
MobiDBLite 256 502 247 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function U1 snRNA binding Interacting selectively and non-covalently with the U1 small nuclear RNA (U1 snRNA).

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0116300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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