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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0116500 |
| Transcript ID | LotjaGi4g1v0116500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NADH-ubiquinone oxidoreductase chain; TAIR: AT1G20460.1 NADH-ubiquinone oxidoreductase chain; Swiss-Prot: sp|B5YF00|PIMT_DICT6 Protein-L-isoaspartate O-methyltransferase; TrEMBL-Plants: tr|K7K4E0|K7K4E0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0116500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16853210..16858389) extracted from Lotus japonicus Gifu genome v1.2.
GCAGGTTTGGTTTGTTTTTGTTAATTGTTGGTTAACCCGCTAAAACGCAAAGATCTCCATTGTTGGATTCGCGGAAAGCG TGAGTGAATGTGAATCCGATCCTTGTTTGAAGAGAATGATAACGCGTTCTAAACTCGTGGAGCAGCTCCGAGATTACCAG ATCCGATCTCAGCACAAGTATTCTCCCCTCACGTTCTTCTCTCCCAAACCCTATATCATTACTTGGTAGGTAACAAATCA ATCAATTCCCCTTTCTTCACATTTTCTCTTTTTATTCAAAACTCTTGCTTCTTTCTTATGCTTCTGTTATCAAATTGATT TTTTCTTTATTATATTTCTGGACTGGACTATCAAGGTTATGGAATTCATATGAACTAAATAACTATTGGCTTATTTAGTG GCCAGCCTCCTACCGCCTAGCTTAGTGCGCTAACAGTGGGGCGAGAGATTAGTCTCACGGCTATAGGCGGTGAGGATACC TTGCTTAACACCGAAATTTAGGGCACTTCTAGTATCAACTTTTATTATTATTATAAGGATTAATCGTACAAACCAGTTAC CATATGTTTGGGCATTGGAATTAACTAGTATTGCTGTGTCTAGATATGCTGAGGGATAAAACATTCCTAGACAAAGGGAC ATACTAGAAAAACCCCTTCATTTTCAGTTGGAGTATATGAACCAAACTTGTATTGTTGCCTATAGCTAGCTTCAGAGATC TTATAGAAGCTAACTGATCACACTCACAAAGTCACAGTGAAGCTGCTACATTCATCCACTTTCAGGACTGAATATTTCAT GCCATGTTATACTGAGTTGTCTAGTAGCAATTGAATGTGCCGTAAGCATAGAACCTACTCTCTCATGTGCATATGAGAAT GGAGTATAAAAGATTCTGAAATTTGCAATTCCTATCCCCTGTCTTGACAATATAGAAACTTTAATTGAAATCTAATGTTT TTTGGTGGAGTTTAGGAGTTGTTCGTGGTGCATAAAGGTATGGGTATAAAGTGCATTAATATCAGGCAAATGAGTATCTA AAAAAAGTTACATCTGTTGTGAATTTTGTAGTTAATAAATCTGTATGGAATGGTGACAGCAAACCTCTATGTTATAGAAC GACACACAATAACACAAATCCTAAATGTGGTGTTCAGGTTGCGGTTCTGGTGCCATTTACTATTATGATCTAACTCTTTC GAGTTTAATGTTATGAAACATAAGGCAAACCTAAAGATGAAGAAACTAATGAAATTTTTCCTGAAGGTTTGTGTTCTAGA AAATTTTCATATAATCTTTCAATTTTATTACTGCGTGAGCTTTAATGAAGTAGTTTGGCTTTGAAAAGGGCTTTTACTTT CAATCAATTCTGGGGATCAAACAAAACACTATATCAGCATCTGTTTTCTCATAGTATATCAATTAGCTTTTCTGTACCAA CATAGTATGCCCTTACTTGGGACCATAGATCTCAGGTTCTTTCTGTTTTCTCAAAGAAACAAATCTGGAGAACCGAAGTT TTAATTTTTGTCACTTCCTCCCAATCCATTAAATGCAATGACTTTGTCTCCTCAGACATGCTTAATCATAGTGCTATAAA AAAGTATACCATTACTCAGTTTTTGGAAACATGGACATATTCTTCCATTGAAGGTTGTTGTTATATCTCAAAGCATATCA ATTCATTAATTAAACCACTACTTAAGTGCCAAACACAAACAGCACTGGAGCCATAAAACTGGTTAAGTGTGCGCTAGACT GGATAGATTTGTACTTGTATCATGGAGAAAATGCATTTAAGTTGTCAAGAACAATTTAGTTTATATGCAAGCATTAGATA TTTATAGGAACTCAAAGTTAGTTAATTAGTAGTTTAGTTAGTTAGTTAGAAAGTGAGGAAGCACATATTAGAATTAAGAG AGTTAGTAAGGATTATGTATCATCTCTGGGGTTCACTGTTACTGTGAATTCAGGAGAGATCAGCTTCTCTCGAATAACCT GAAGTCCATAGAATTCTTTCAATAATATAGTTTGTTAGTTACTTGTTCATTGCTGGTACGGCAATTGGTATCAAAGCTCT GATCTTGGAGCTGTGGCCTGTGGGCATTGAATATGGGAGGACTCAGGAGCTGTACATTGCCACCATTAGTGAGGCAGGAA ATTTATGACATTCTTAGTGAAAAGAGGAAAGAGATCACAGATTGGACAATGTAACTCCAAAAGGGAAAGCTCAAGGAGGA ACTTGCAGATTGGAGAAGGAAATTCTAGGGGAGAGAGCTGAAGGAGGAACAAGAAATGAGAGAACAAGGAATCCTGGAGC AGGAAGGGAGATCAGAAATAAGAAGCAGAGATGAGGTCTTGAAGACCAAGGACCAGGCTGGTGCAATGAAGGTCAGTGGA ATTGTCCGGTGAAGTCGTGACGGACAAAGCAATAGCCCTTGAAGTCCAAAGGAGAGGGGGAAAAGAATTTCAGAGTTCGT GGCGAGGAGGACCGCACGGCCTACATGTGCAACCTTCAAAGGGGGGAAAATAGGTGAATCTGGGCATGTATTTCAGGGTG CTGTTCCTGTCTGAAAAACGTTGATATTGTCCTCGACAGGAAAGAAGAATGAGAGGAGCAATACCGAGATTTCTGGTCAA GCGCACGCCATTGAAACTGCTGTACTATGGTGCGAGTACAGTGGAGGTAGCTACTCTAGTATGGAGACGAGAATGCCCTG ACCAAGCGGCCACCGCCAAAATTGCTGGACGAGGAGGCTCATGGACTGGTTGTGGTGACTTCATCAATCAAGAGTGAAGA GGATGGGAAGCAGGGTCTTGTAGGGCAGAGGCTCATTAAACAACTGGTGTGACTTCCTTGCCAGAGAGGACAACATGGAG GGCCCGCCCAAACCACCAGATCCAACCTTTTGCCTGGTGGAGGAAAGAAGGGGATTGGTCATGAGCTGGTCATTCCACTC TCATGGGCTGCAGGGTCAGCTCATCACATATAGGCTTATTCCGCTGGAACAGTTAGACTAGATTACTCAGATAGTGGCGG AAATTACATGAATGAAAGGTAAGAAGATAGGGAGGGACGATGGTCATCCCACTACACCATGGCAAAAACAAGAGAAGACA GCCAGCTCAAGAAGGCAGGGTTCTGTTTTTGACCTTAGTGGGCCCGTGCCCGTACCCGTAACTTATCCATTTTATGTGTT ATCAAGGAGCACAGGTGAGGGCTCTTATTACACAAGTGAGTTTGGTCTAACAAAGAGATAAGTATTTCAGTGGGATCACG ATGAAATTTGTTTTAACATTTACATAACCCTTCACCTTGGGGTCAAGGTGAATGTTCATGGGGGAAGTATTGATAGGTAA TCATAATTTGATAGTAGTTTAGTTCATTTTTTAGTTAGAAAGAGTTAAGTTTGAGAGTGGGGAAGCTCATGCTATAAATA AGAGAATTAGAAAAGATTATTATCTTTGGGGATCATTGTAATTGGGAATTTGGGAGAGACATGGTTTTCTCGAATAACCT AGAAGTTCATACTTCATAGCATTCTATGAAGAAAGAGTCTTTCTTCCTTTTTCATTGCTCGTACCTATCAGACATCCTAT GCATTCATTTTTAGTTGGTGAAGTGGATCCATAATAAGATAAGTTGTCCAATGCTGTACTGGGATGCCAAAATAGTTCCT TAGTTAATGACTTGGGCATACAATGTCTTCGTCTTTAATTTTGATTTGATGTGGTATTTCCATGATATTGTTTCTGTGTA TAATCCAAATTATGATGTTTGCCTGGGAGCACTGTGATTGTGTTCATTTTTATGATTTACGAATTGATCATGCTCTAATA GCTCCAGATGAATTTAGTACATGTATTAAGATATGAAAGCTTTTCAATTCTCAACAATGTACACTTTCTTCACTCTTGCC ATACACTGAGGAATTTAACTTGGGAAAGATGTTCCATATTAATTGATTCAGGTGATCAGGTCCATATCTGTGGGTTCCAA CATACAAGATATTGTAGGTTGTAGGCTTGTAGCACTTTCCAGTTAGGCTTGTTTTATATAAAAGGAATAAATTATAGACA TTAATATATTTTAATCAGCTCATAAAAAACAAATCTGGACTTCCAATCCCATCTAGGATTCATTCGTGTCTTGGCATAAT TTTCTATCAAATTCATCCATATATAAAATGAATTGAAGGTGTTGGGACTTGGGAGATTATTGATGGCATTATGCTTAACA ATTTCCTTAACTTCTTGCAGGGCTGATGTTGCTGTAGCAATTTCTTTTGCTCTAGTATTCTGCATGCTTTTCATCGCGTC CTGTATGACCCTTTACTTCAGGCGTTTCTGGGTTTTTGTTATTGTTGTATGCTTCGTTATACTTCTTCCTATACGCCTAA GAGCCTCTAGACAGACATTGACAAGGAAGAGGGAAAGAAGACTACCATTGTCCATTTGAGCATTCATTGTGGTGATACAT CTCACATATACTCTAGCAGGCAAGGGAGTATTTCTTGGCGTTTAGTTAGTTGATCTTTCATGGATATTTTGGTGCTCCCA GCACTAGTGTAGTGAAAAAAAATTCTACCTTTTTTTTATGGGGATAGTATTAATCTTCACAAACCATATACAGAAATCAA GTAAAATTGTCATGCACTTGTTTCACGTGTAATGCTCATAAGATTTGCCCAGACAAGAGGCGTGAAATTTCTTACTTTTT TTAATTAACTTGTAGATTTTCAATATTTGAGGAATTTCCATGATGTTCTGCTGTGAGTTTTTTTTCAAAAACTCTGCAGC CAAGGTAGTAGTCTCTGTATAATTGGCAAATGTAAATAGTTACAGTTGGTGAGCAAATAACAAAAGGAAAATCTCCCAGG AAATATTGCAAGATAGCTTTCTAAGCAAAATATGATGTGTCAAATCATTGCACGTTGCATTTTTTATTTGATTTCATTAT CATGTTCTGAATCCCAGATTATTTGGCTGAGATACTGATTCACCGTTCTTCCTCCTAACTTCCTAAGCTCAAAAGTTGTA CAGGATGTTTTAGAATGAATGTTTGATTGATGATTATGAACAGCTGTTGGAGTGTGATTACATTAGTGGTGGTATTATTG TGTGATAAGAAAAGACCTGGTAATTAGAAGTATCATATCTTATATTTGACTGATGCTAAA
CDS sequence (LotjaGi4g1v0116500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAACGCGTTCTAAACTCGTGGAGCAGCTCCGAGATTACCAGATCCGATCTCAGCACAAGTATTCTCCCCTCACGTT CTTCTCTCCCAAACCCTATATCATTACTTGGGCTGATGTTGCTGTAGCAATTTCTTTTGCTCTAGTATTCTGCATGCTTT TCATCGCGTCCTGTATGACCCTTTACTTCAGGCGTTTCTGGGTTTTTGTTATTGTTGTATGCTTCGTTATACTTCTTCCT ATACGCCTAAGAGCCTCTAGACAGACATTGACAAGGAAGAGGGAAAGAAGACTACCATTGTCCATTTGA
Protein sequence (LotjaGi4g1v0116500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MITRSKLVEQLRDYQIRSQHKYSPLTFFSPKPYIITWADVAVAISFALVFCMLFIASCMTLYFRRFWVFVIVVCFVILLP IRLRASRQTLTRKRERRLPLSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 102 | 102 | 6.7E-43 | – | |
| PANTHER | 1 | 102 | 102 | 6.7E-43 | – | |
| Phobius | 1 | 33 | 33 | - | – | |
| TMHMM | 34 | 56 | 23 | - | – | |
| Phobius | 34 | 56 | 23 | - | – | |
| Phobius | 57 | 61 | 5 | - | – | |
| Phobius | 62 | 83 | 22 | - | – | |
| TMHMM | 66 | 83 | 18 | - | – | |
| Phobius | 84 | 102 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0116500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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