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LotjaGi4g1v0117700.1

Overview

Field Value
Gene ID LotjaGi4g1v0117700
Transcript ID LotjaGi4g1v0117700.1
Lotus japonicus genome version Gifu v1.2
Description GATA transcription factor, putative; TAIR: AT3G50870.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q8LC79|GAT18_ARATH GATA transcription factor 18; TrEMBL-Plants: tr|V7CGJ5|V7CGJ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0117700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:17032326..17034162) extracted from Lotus japonicus Gifu genome v1.2.

CCCTCTTCACCACTCTCTCTCTCATCACCTCGTTGCTTTTCCGGGTGCTACCTCCTTCTATAAATTGAGACCATGCAACC CAACCAAAATATCAAGCCAGAGCCAAACAAACAGTGTCACAGTTACAAACTCTCTAAAAACACAACACTTGCTCATAGTG ATAATGATGTACCCTACCACTACCACCACCACAACACTCACTTCCTGACTCACTCACTGACTCTATCACCCACTCTTTGA TTTCTTCTCAGTTCTCACTTTTTCTTTCCCTCACACTGTAGGTATCATCACCCGGGTCCCTCTCTGTTAGTTTTTTCTTT CTTATACCACTCAAAATATATAAACATACTTATGTTATGTGCATGTCTCCTATTCACAGATAACGACATCGTGGACTGCA GCTGCTGACTGCCAATTCGCCATATTATTACTTATAAAGCTCTCCGACAACCACTGCCTCTCATTTTCTCCCCCACTCTC GTACATTTTAACTCTTTCTTCCACTTCCTCAATTTAACATTTCAAACATTGTCATTCACTTTCACAATCTCACTCTTCCA ATTCTCCCACCACCACCACCCTTCTCCATTTCAATCTATTTCCAATGATGCATCATTGTGGTGGTTGCTCTCAAGGTCAC ATGATGGGAACATGCACATGCGGCATGTTTCATAACACCGAACCCAATTCTTACTCCATGGCATTCTTCTCCATGCCAAC CCAACTACCCTACGATGATTATGAAAGTGATATGTACCCTTTCACGCCCTCTCCGACTTCTGCCGTCGACTGCACGCTCT CCCTCGGAACCCCTTCCACACGCTTGACGGAAGACGAAGGAGGGAGGCGAAACCGCCACGAACGTCGCTCTTCCGCCACC AACAACTTTGGATGGGAAAATTCATCAAAACCCCAAACCAAAGCAAGCAGAGGAAGCCACAATGGTAACTCCAACAATGA TTCTCTCCTCGCTCGCCGGTGCGCCAACTGCGACACCACTTCTACACCTCTTTGGAGGAATGGCCCTCGAGGCCCAAAGG TAACCAATACATTTTTCTCATTTCTTAAAAAATGTATTATTTTTTAAAAAATAATTAATTTATCGCAATGTCGACAATGA GTATGTTGTAATGTGTTCTTAAAAGAATGTGTTGCGAGCGTTTCAGATAAAAAAAATTCGTACGTAGTAAAATTGATTGT GTGATGTAATGTGTTTGCAGTCTCTATGCAATGCTTGTGGGATAAGATTCAAGAAGGAGGAGAGAAGAGCGAACGCCGCA GCCACCGCCACGCCAGCCGGGGCTGCTTCCGGTTACGGCAGTTCATGGTACGGAGCACAGTCGCAGATTGGGAACGAGTT ACGGTTCATGGATGATTCCGATAGGGACTCGGAAAATGGCATTCCATTTCTCTCTTGGAGACTCAACGTTGAACATTATT GAAAATTGAAATTGAAGCATGTGGTGACAAAATTAATGTACGTTAATGCAAGAATTGAAGAAGCATGAGGAAAGCAGCTA GGTACGTAGCTAGCTTAGGTTGCTAGGTAGATATAGATTGACGTTCAAAACAAGACAGGTGTACGTCAAGTTTGACGATG AAGATGATGATGATGTAGATGTTTTTGATTGCGATGGTCTCGTCAATGTGTTTTGTTTTATTCTTTTTTTGACCTCATCC TTTTTGCTTGCTTGCAAGCTTCCTTTTCTCCGTCTTCTATAATGTGGACCAAGAACGGGATAATTCTATGTTCCTATAGT TTGTTTTTTCTTTTTCTTTAACTTTAATTTTCAGCTACATAATATATCAATATTAATCTTACCTTTCAGTTGGTTCA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0117700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGCATCATTGTGGTGGTTGCTCTCAAGGTCACATGATGGGAACATGCACATGCGGCATGTTTCATAACACCGAACC CAATTCTTACTCCATGGCATTCTTCTCCATGCCAACCCAACTACCCTACGATGATTATGAAAGTGATATGTACCCTTTCA CGCCCTCTCCGACTTCTGCCGTCGACTGCACGCTCTCCCTCGGAACCCCTTCCACACGCTTGACGGAAGACGAAGGAGGG AGGCGAAACCGCCACGAACGTCGCTCTTCCGCCACCAACAACTTTGGATGGGAAAATTCATCAAAACCCCAAACCAAAGC AAGCAGAGGAAGCCACAATGGTAACTCCAACAATGATTCTCTCCTCGCTCGCCGGTGCGCCAACTGCGACACCACTTCTA CACCTCTTTGGAGGAATGGCCCTCGAGGCCCAAAGTCTCTATGCAATGCTTGTGGGATAAGATTCAAGAAGGAGGAGAGA AGAGCGAACGCCGCAGCCACCGCCACGCCAGCCGGGGCTGCTTCCGGTTACGGCAGTTCATGGTACGGAGCACAGTCGCA GATTGGGAACGAGTTACGGTTCATGGATGATTCCGATAGGGACTCGGAAAATGGCATTCCATTTCTCTCTTGGAGACTCA ACGTTGAACATTATTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0117700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMHHCGGCSQGHMMGTCTCGMFHNTEPNSYSMAFFSMPTQLPYDDYESDMYPFTPSPTSAVDCTLSLGTPSTRLTEDEGG RRNRHERRSSATNNFGWENSSKPQTKASRGSHNGNSNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER RANAAATATPAGAASGYGSSWYGAQSQIGNELRFMDDSDRDSENGIPFLSWRLNVEHY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46813
1 216 216 5.7E-67 –
PANTHER
PTHR46813:SF5
1 216 216 5.7E-67 –
MobiDBLite
mobidb-lite
62 121 60 - –
MobiDBLite
mobidb-lite
75 91 17 - –
MobiDBLite
mobidb-lite
92 121 30 - –
ProSiteProfiles
PS50114
120 156 37 13.943
IPR000679
SMART
SM00401
120 172 53 4.8E-19
IPR000679
Gene3D
G3DSA:3.30.50.10
121 169 49 3.5E-14
IPR013088
SUPERFAMILY
SSF57716
123 163 41 9.98E-14 –
CDD
cd00202
125 157 33 4.94598E-13
IPR000679
Pfam
PF00320
126 160 35 4.9E-18
IPR000679
ProSitePatterns
PS00344
126 151 26 -
IPR000679

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0117700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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