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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0118600 |
| Transcript ID | LotjaGi4g1v0118600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT5G48050.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q9UPN3|MACF1_HUMAN Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5; TrEMBL-Plants: tr|A0A1B5Z9U6|A0A1B5Z9U6_TRISU Uncharacterized protein; Found in the gene: LotjaGi4g1v0118600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:17132429..17133159) extracted from Lotus japonicus Gifu genome v1.2.
CCACCATTTCTGATGACCTAATGACTACCATCATGGAGCCTGACTCCACTGCTTTCACCGCTTGGACGCGTTTGGCGGAT CTCTTTCACGATAATCAGAACGCCCGTGCTGTCACCCTGGAGCAGGAGTTCTCTACTATTCGCATGGAGGCTTTTCCGAC CGTTGTCGCCTACTGTCAGCGTCTGAAGACGCTTTCTGACCAGCTCCGTGATGTTGGGGCTCCTGTGAACAATCATCGTC TGGTATTGCAGCTCATCTCCGGTCTCACTGATGCTTACAAGGGTGTTGCCACTTTGATTCGCCAGAGCAATCCGCTCCCC TCGTTTCATCAGGCTCGCTCTATGCTTACCTTGGAGGAAGCTGGTATGGCTAAGATGAAACCTGCTGAGCCTCTTGCTGC CTATGTTGCTACTCATCCGTGTCCTTCTAATGCCTCTTCTCAGAGCTCTGATCGTAAGTCCTCCAATCGTTCTCGATCCC ACAACTCTAAAGGTCGTGGTGGGAATCGTGGCAACGGTGGCGGATCCCGCAGTGGCACCTCTCAGGGCTCATCTCCTCCG ATGCCACCTTAGCCGCAGTACTTTCCATACCAGCATTGGGGATGGGCCCCGCCTCCATGGGTCGTGCCTTGCCTCCGTGC CCATACCCTGCCTCTTAGTGGACTCGTCCTTCTGCCCCTCCTCGACAACTCGGCATCTTGGGCCCACGTCCTCAGGCTTA TGCTGCTTCGA
CDS sequence (LotjaGi4g1v0118600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTACCATCATGGAGCCTGACTCCACTGCTTTCACCGCTTGGACGCGTTTGGCGGATCTCTTTCACGATAATCAGAA CGCCCGTGCTGTCACCCTGGAGCAGGAGTTCTCTACTATTCGCATGGAGGCTTTTCCGACCGTTGTCGCCTACTGTCAGC GTCTGAAGACGCTTTCTGACCAGCTCCGTGATGTTGGGGCTCCTGTGAACAATCATCGTCTGGTATTGCAGCTCATCTCC GGTCTCACTGATGCTTACAAGGGTGTTGCCACTTTGATTCGCCAGAGCAATCCGCTCCCCTCGTTTCATCAGGCTCGCTC TATGCTTACCTTGGAGGAAGCTGGTATGGCTAAGATGAAACCTGCTGAGCCTCTTGCTGCCTATGTTGCTACTCATCCGT GTCCTTCTAATGCCTCTTCTCAGAGCTCTGATCGTAAGTCCTCCAATCGTTCTCGATCCCACAACTCTAAAGGTCGTGGT GGGAATCGTGGCAACGGTGGCGGATCCCGCAGTGGCACCTCTCAGGGCTCATCTCCTCCGATGCCACCTTAG
Protein sequence (LotjaGi4g1v0118600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTIMEPDSTAFTAWTRLADLFHDNQNARAVTLEQEFSTIRMEAFPTVVAYCQRLKTLSDQLRDVGAPVNNHRLVLQLIS GLTDAYKGVATLIRQSNPLPSFHQARSMLTLEEAGMAKMKPAEPLAAYVATHPCPSNASSQSSDRKSSNRSRSHNSKGRG GNRGNGGGSRSGTSQGSSPPMPP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 135 | 133 | 5.3E-47 | – | |
| PANTHER | 3 | 135 | 133 | 5.3E-47 | – | |
| Pfam | 8 | 114 | 107 | 2.0E-17 | – | |
| MobiDBLite | 132 | 183 | 52 | - | – | |
| MobiDBLite | 158 | 176 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0118600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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