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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0119400 |
| Transcript ID | LotjaGi4g1v0119400.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubby-like F-box protein; TAIR: AT2G18280.1 tubby like protein 2; Swiss-Prot: sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5; TrEMBL-Plants: tr|I3T5J4|I3T5J4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0119400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:17226375..17229914) extracted from Lotus japonicus Gifu genome v1.2.
TGATTTAATAAATCATTTCACTCTGACACCAAACCTTAGTCTAAACCAAACGCAATGGCCACGTTTACAAAGGCTGAGCA GTAAATATAATCATCCACTTTTTGCAACACCACAATAAAATAGTAGTAATAATTTAATAATAAAAATAAAAATGTGAGAA GATGAAAAGGGTGGATCCGATTCAACTGGTGGCGGTGGCGGTGGCGGAGGAGTATGCTTTAACTGCTACTCCCTCTTGTA ACTAACTGCTTCTTCTCCGTCGACGTTGGAATTTCTAGATCCGTATTCTAAAGTTGCAGCAGCGTTTGATCTCTTCGTTC TTCGCTTCAATTTCTCAGGTCGAGGTTTTCATGATTCGTCGTTTTGTTTACCCGATTTATTTATTTATTTTATTAATGGG GTTTGCTTTTTCTTCTTAGATCGATGCTTTCCCTTTGTTTGTTTTCAATTTTTGTTCATAAAAATAAGGATCTTGCTTTC TTCCATTGTTACTTTGTTAGTATTACTTTGTTAATGGGGAGAATTTAATTTTGGCATTTTAGTGAAACATTTTGGTTTTT TACTTTTCGATGTATTATCTTGTCTGAAGTGAGCATACTACAACACCTTTGATGATATTCATGAATTATTATATGTGTGA ATTATAATATGAGTATGACCAGAAAGTGGTTGTTAATTCTAGGGTTGGTTGCTTGTTTCTAGTTGTTCACGCTATAATTT TGTTGGTGATGGTTTCAATGTGTTGGATCTGGAGAAATGTATGCCTTTGCCATTTATCTCTGTTTTTAGGAACAAAGTAT GTGTTTCGATACCGGACGTTCCGTTCACTTTTGTCTCAAAGTGAGTGCTAATGTCTGTTTGCACTGATGTTATCGTGTAG TGTATCCAAACATTTAGTTAACTGTTATGCTTGTTTTGTTATTAGTCTTTTGTCTTTGAGTTGTTGTCAGTATCAGAAAG CTAGAAGAGCTAACATTCAGATAAACAGCATCTTTCCCCAAGACCAATGTGGAATGTACAATACTAGTATTTTGATTCTG TTTGGATTGGTGCAGTTTTGTGCTGGAAGGAAGATTGGTAAGCTGTGTGAACATGTCGTTGAAAAGCATAGTTCGTGAAA TAAGGGAGATGAGGGATGGCATAGGTAGCATATCAAAGCGAGGTGCAGAAGGCAAGCATTGGCTTCGTCGGACAAAGTCA CACATTGCTCCGGATGTCCTTGTAACTCCATATGAGCCCGTTCAACAGGGACAGTGGGCAAATTTACCACCGGAATTGCT TTTGGACATAATCCGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGATAGGGCTGTTGTTGTTTTTTGTGCTTCGGTAT GTAAATCATGGAGGTCCATTACCAAAGAGATCGTCAAGACTCCTGAACAATGTGGAAGTATCACGTTTCCTATTTCATTG AAGCAGGTAGTAAAACTTTCACTCCTTCTCTGGCCTAAGAGTCTTTCCTCTTCTTTGCCTTGAGGTTGTTTTCTTTCTTA TGTTTCATTTTTCTTTATGTGTATGAACAGCCGGGTCCTCGTGATTCTCCAATACAGTGCTTTATAAGGAGGAATAGAGT AACTTCTACATATCTATTGTACCTTGGTCTGGTGCCATGTAAGTTATTCCATTTCAGAAACATTCAAATTCCTTTTTTCT TACACAAGGGATATCAATTTTCACATTTTTAAATTATTCTCCAAGCTTGCATTAATAACTGAATGTTGAACTTCCAGTTG CTTGCTTTAAACTTATGGGTTTATTTATATTTTATTGGCATTTGCTTTGCACTTCTCAGCATTATTGCTTTTTTGGGATT GCATTGTTTTCATAGTTCCATTCTCAAATTTATTACTCAGTATCCATGTCATTCTTAACATTCACATATGGAGGCGTAGA ATACAGTTTGCTTTATATAAAATAAAATCTTTGTTTATTTAGAATTTAAAAGCGGTTTAAATGCGAAAGAAATTAACTTA AACCTTTGGATATTGTCAAAGCTAATTTTGGTATTGTGTTCTTCCTTTCATGATCTGTTGTAATATCTTATTGAGGGTTG ATAGAATTAGTTTGTGATATGATATTCGAGAAGCTTGTTTTGCTTTGGGTGTAATTGTACAGCGGAGAATGAGGGTAATA AGCTGTTATTAGCTGCCAAAAGGACAAGAAGGGCAACATGCACCAATTTTGTCATATCCTTGGCTGCGGATGATTTTTCT AAAAGCAGCAGCAAATATGTTGGTAAACTGAGGCAAGTTTTGGCCGATCATCAAATTTTAACCTTAATAGTCAGTTTGTT CCTTGAAAGATATGGGTCGGTTAACTTAGTCCCTGAAAGATGGAAACAGGCTAAATAGTCATTGAAAAATGATAAATTTA GTCCTTGAAAGATGGATATTACGATCAAAGTAATCCTTGAACATTTTTTTCATCTTTCGGAGACCATTTTGCCTATTTCC TTGGTAGGGAGACGAAAATGACCGATCCTATATCTTTCCGGGACCAAAATGACTGTTCGTTTTTCTTCTTTGCAACTGAT GTTAAGCTTTTTGGCAGGTCTAATTTTTTGGGCACCAAGTTCAATATATACGACAGCCAACCTCCCCATGATGTAGCAAT TCAACCAAATTGTCGATCTAGTAGAAGATTTAGTTCTAAGCAAGTTTCACCAAGAGTTCCAGCATGTAACTATCTCGTTA GCACCGTGTCCTATGAGCTGAGTGTTCTCTGCACTAGAGGGCCAAGAAAAATGCACTGCATCATGAACTCTATACCCATC TCAGCTATCCAGGAAGGGGGCAACGCCCCAACTTCAACATCTTTCCCTCAAATACTTGACGAACCTTTTTCTCCCTCTCC AGCACTGAAAGGAAAACGTCCAGCTGCAGATTCAAACTCTGGTAGCCTATCAGAGCTACCAGCATTGAGCCAAGACTCGG TTGAGCCCTTAGTACTGAAAAACAAGGCTCCCAGATGGCACGAACAGCTACAGTGCTGGTGCCTGAACTTCAAGGGTCGT GTTACGGTGGCTTCTGTTAAGAACTTTCAGCTCGCAGCTTCCGTCGATCCATCGCACAATGTTTCTGCCGCGGAGCAAGA AAAGGTGATCTTGCAGTTTGGAAAGATTGGAAAAGACATGTTTACCATGGATTACCGTTATCCACTCTCTGCCTTCCAAG CCTTTGCCATCTGCTTGAGCACCTTTGATACTAAACCAGCCTGTGAATGAGAACCGTGTTAGTATATGGTGATCTTCTGC TAATTTGTTGCTTATATATATAAATGTCAGGCAGAGTTTATCAAGCATGGAGGATGCTGCTGAAAAACTTAGCTGTGCAA TCATTAGTGTTCTCTTGTTGTATTTATTGTTGGTTCTGTAATTTATGCTGTCAGTTGTTTCATGGTACTGCAGAATTGTA TAATACATATCTATTGCTAGGTATTCCTCACTGATGAATCTTTTGATTTGCCTGAATTTCAGATATCGTTGTTCTTTGCT GATGATGATTAAGTTATGAC
CDS sequence (LotjaGi4g1v0119400.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTTGAAAAGCATAGTTCGTGAAATAAGGGAGATGAGGGATGGCATAGGTAGCATATCAAAGCGAGGTGCAGAAGG CAAGCATTGGCTTCGTCGGACAAAGTCACACATTGCTCCGGATGTCCTTGTAACTCCATATGAGCCCGTTCAACAGGGAC AGTGGGCAAATTTACCACCGGAATTGCTTTTGGACATAATCCGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGATAGG GCTGTTGTTGTTTTTTGTGCTTCGGTATGTAAATCATGGAGGTCCATTACCAAAGAGATCGTCAAGACTCCTGAACAATG TGGAAGTATCACGTTTCCTATTTCATTGAAGCAGCCGGGTCCTCGTGATTCTCCAATACAGTGCTTTATAAGGAGGAATA GAGTAACTTCTACATATCTATTGTACCTTGGTCTGGTGCCATCGGAGAATGAGGGTAATAAGCTGTTATTAGCTGCCAAA AGGACAAGAAGGGCAACATGCACCAATTTTGTCATATCCTTGGCTGCGGATGATTTTTCTAAAAGCAGCAGCAAATATGT TGGTAAACTGAGGTCTAATTTTTTGGGCACCAAGTTCAATATATACGACAGCCAACCTCCCCATGATGTAGCAATTCAAC CAAATTGTCGATCTAGTAGAAGATTTAGTTCTAAGCAAGTTTCACCAAGAGTTCCAGCATGTAACTATCTCGTTAGCACC GTGTCCTATGAGCTGAGTGTTCTCTGCACTAGAGGGCCAAGAAAAATGCACTGCATCATGAACTCTATACCCATCTCAGC TATCCAGGAAGGGGGCAACGCCCCAACTTCAACATCTTTCCCTCAAATACTTGACGAACCTTTTTCTCCCTCTCCAGCAC TGAAAGGAAAACGTCCAGCTGCAGATTCAAACTCTGGTAGCCTATCAGAGCTACCAGCATTGAGCCAAGACTCGGTTGAG CCCTTAGTACTGAAAAACAAGGCTCCCAGATGGCACGAACAGCTACAGTGCTGGTGCCTGAACTTCAAGGGTCGTGTTAC GGTGGCTTCTGTTAAGAACTTTCAGCTCGCAGCTTCCGTCGATCCATCGCACAATGTTTCTGCCGCGGAGCAAGAAAAGG TGATCTTGCAGTTTGGAAAGATTGGAAAAGACATGTTTACCATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTT GCCATCTGCTTGAGCACCTTTGATACTAAACCAGCCTGTGAATGA
Protein sequence (LotjaGi4g1v0119400.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLKSIVREIREMRDGIGSISKRGAEGKHWLRRTKSHIAPDVLVTPYEPVQQGQWANLPPELLLDIIRRVEESETSWPDR AVVVFCASVCKSWRSITKEIVKTPEQCGSITFPISLKQPGPRDSPIQCFIRRNRVTSTYLLYLGLVPSENEGNKLLLAAK RTRRATCTNFVISLAADDFSKSSSKYVGKLRSNFLGTKFNIYDSQPPHDVAIQPNCRSSRRFSSKQVSPRVPACNYLVST VSYELSVLCTRGPRKMHCIMNSIPISAIQEGGNAPTSTSFPQILDEPFSPSPALKGKRPAADSNSGSLSELPALSQDSVE PLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLAASVDPSHNVSAAEQEKVILQFGKIGKDMFTMDYRYPLSAFQAF AICLSTFDTKPACE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 414 | 414 | 1.8E-242 | – | |
| PANTHER | 1 | 414 | 414 | 1.8E-242 | – | |
| SUPERFAMILY | 49 | 98 | 50 | 5.1E-6 | ||
| Gene3D | 54 | 100 | 47 | 1.9E-5 | – | |
| Pfam | 55 | 107 | 53 | 9.7E-9 | ||
| SUPERFAMILY | 104 | 414 | 311 | 7.59E-95 | ||
| Gene3D | 113 | 414 | 302 | 7.3E-93 | ||
| Pfam | 118 | 409 | 292 | 6.4E-91 | ||
| PRINTS | 170 | 186 | 17 | 1.6E-70 | ||
| PRINTS | 186 | 210 | 25 | 1.6E-70 | ||
| PRINTS | 235 | 262 | 28 | 1.6E-70 | ||
| MobiDBLite | 291 | 311 | 21 | - | – | |
| PRINTS | 324 | 341 | 18 | 1.6E-70 | ||
| ProSitePatterns | 342 | 355 | 14 | - | ||
| PRINTS | 342 | 358 | 17 | 1.6E-70 | ||
| PRINTS | 371 | 390 | 20 | 1.6E-70 | ||
| PRINTS | 392 | 414 | 23 | 1.6E-70 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0119400.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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