Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0121300 |
| Transcript ID | LotjaGi4g1v0121300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin-dependent kinase inhibitor family protein; TAIR: AT5G48820.1 inhibitor/interactor with cyclin-dependent kinase; Swiss-Prot: sp|Q9FKB5|KRP3_ARATH Cyclin-dependent kinase inhibitor 3; TrEMBL-Plants: tr|G7L186|G7L186_MEDTR Cyclin-dependent kinase inhibitor family protein; Found in the gene: LotjaGi4g1v0121300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:17545169..17548581) extracted from Lotus japonicus Gifu genome v1.2.
TTTTAGCATGCTTTCATATTTTTATAAAATTTCAGTTCCTACAAAAAAGAAAGAAAAACCCTAAAATTGAGAATCTTCCT CCCCACTTTTGCCCCCACAATACAATACAAATTGGTCTCTTTCCCTCCTTTCCCTCTCACTCTCTCTCTTTCCCGCGCTT ACCATCACTCACCTCCATTTGATTTCGACTCTCATCAATCATATTCATACACACTGCTTCTTCTTCTGTTCAATTGACCA GAAAGAATACCCGATGGGAAAGTCCATGAAGAAATCCAAAATCGCCGGCAACCTCGCCGCCGTGATCACAGAGGCTCCAC CACCGCCTTCCTCGCCGCAACAGTCGGATCCCTCCGCCTACCTTCAGCTCCGGAGCCGCTGCCTCCTCCGCAGGGTTCCG CCCGCAGCCGCCAATTCCAGGCTCCGAGAGAGTTCGCCCAAAACGCCGTCGTCTCGGTTCTGTGTGCAAGAGGAGAACGC TGATGTCGGTGCGGAAGATTCTTTTGGAGAAAATTTCTTCGAGGTTGAAGACAGAGATAGGTATAATTTCAATTTTCAAC TCGAATTATTTCTTCAAATTTTCACTGCGCTTTCTGTCTTTTTATTCAATTTCTTCAATAATTGTTTTTGAAAATTTTCC CCTTTTGCTTTGATCTGCATTAATCATTGAAAAAATAATTGTCTGTTCATTATTTGTGTTCATTGTGTAGCTCTTTCTGT TTGTGAATTGCTTGATACTTATATGTAGAGTCAATTGGTGTTTCTTTTTCTTATATAAATGTGCATGCAAGTGTTTCTAA AGTTTTGAGAATTTTCGCGATTTTTATGTGCTTTTCTTTTTTACTAGAGGAGGATGGAAGGTTAGAGTAGAGAAAAGGGG TTTCAGAATTGTTATCTCAAAAGTCACTACTCTTTCTGTCTTTTGCCTTTTTTTATATTATTTAATCCCTGAATTTCACC TGTTTATGCATTTTCATTTTCATGTTATTGTTCTGATCTGATTTTTTATATTATTTAAATTGTTTAATGGTGTGTGAAAT AATCATGAGAATTTCTTGAAGAAGAGGGTTTCAAAAGTCACAAGTCTATAGCTGCTTCTGCTCCTTAGTTATTATTGTTA TTGTGGACTTGTGGGCTGTTTTTGTTGTTGATGTTGTTGTTATTGAACCTTGGAAGGTCTTATTTTCCCTTGATGTTTGT TCATGTATTCTAACTTCTATGTAATTGTTTGATTTCTTACTTTATCAAATCTGGTTCTGAGGTAAGGGTGTGTTAGTACA AAGGATTGCTCAGAATTGTAACTTTCTGTGACTTGTGATAGCTTCCGCAAGTTGTATGCCCATCATTATAGTTATTTACT GCAAGTTGTATTTTTCTGATGTTTTGATATCTGTGTCAATTGCACTGCCTCTAGTACATGAATTGTTATGGTAATTATTT TTGCTATAACTATCTGCTTACATTAATGATGGGTTGTACCAGTAATGTTGACAGTTGATAAATTTTCAATCTTTTTTCAA GTGAAATATATTTTGGACCCCACAAAATAGAAAGTAAGTTTTCTGAACTGATTGAGAAAGAGAAAATTTTCTAACTTGAA GCTGAGTGAGTGAGTGTATTAATGTACATCAACTGTGAACTGTCTCTGCTGTTCTGATTGTTGAGTAATTGTGACCTAAT AATATTCATGCAGTTATATTTTTAGGCCATTTGTCATTGTCATTTGTTTTTCACTCCAGATTTTGATGAACTAAAAAACT GAGTCATTAGAAAAAGGTAAACTATGTTTTGAATCCATGTAAAACACTGGATATTTGATTTTGGTTCATGATTTTTAAAA AGTTCTATTTTGGTTCCTTATGTTTTGAAATAGTCTCGTTTTAGTCCCTGACTATGATTTTCTATGATTTTTTTTTTGAA GTTTTAGTGCAAACTGGCTGGACAACTTGTAATAAACAATTGTGATTCCATAAATGTTGTTTAGTATTGATATCACCTTG TTTTGTATAGTTTGGTTCACCATTTTATTAAAATTAGGGACAAAAGTAAGGCTATTTTATTGTGAGGCATTTTTCAATCA AGTACTAAAATCAAATAGTGACAATTTTTGAAGAACTAATAATATGTCTGTCATGACTCCTGGAAATGCATATAACCTTG ATTGTCCTTTGATCTGCAAGAACGTGCCTGTAGCATTGAGCTTCATAATCTGGACTTTGCAATAACTCTCATGACTCTTG TTAGAAACGATCTGTCATATTCATGGGGCCTAGTTGCGGTCACATGTGTTTCAGATCCCTGTTTAGGCAGGCTTTCACTG AATGAGAAAGATTTGGTCTTCTCTCTCTTTGTATTTTATAGTTGCATCAGCCCAGTGAGTCAGAGCTTGTCCCATTAAAT GCCAGTTACGGTTTTAGATTGCAATTTGTCTCTACTTCCATGCTAGAGAGATTTTGTGCAAAGGAAAAAACAATCATTTT AATTTCACAATCATGTGCAATTTTATTTTTCCTGTTAAACTCTTCTGCTAAGCTAGTTTTCATTACAATCTTTTCTTTCT TTAGCAGAAGCACAAGGGAGAGCACACCTTGTAGTTTAATAAGGGATTCAAGTGCCATTGACACCCCAGGTTCAACCACA AGGCAAAGGAGGCACCACATAGTTCATCCACACATTCAAAGAAATATTCCAACGGCTTACGAAATGGAGGAGTTCTTCGC TTGTGCAGAGAAGCAGCAACAAACAAAATTTATGGACAAGTATGTGTTGTTTTATCCCCACAAGTTATTTTTGCTTTCCT CCTATGCTGTATTTTATATGGATTTCTTCCCCAATTTTTATTCATATAAGTATGTAATATATATGCTTATTATGTATATA TTGTATATATTTTTCAGGTACAATTTTGACGTTGTGTATGAAGTACCTCTGCCAGGACGGTACGAATGGGTCCCAGTACT TCACTAGAACAAGCTTTGGTCATGATATCATATGGATTTCAACCAGCTTTCACTAACCATTCAGATTGTTTGATGTTCTT GTTCAAAAAGCTATAAGGAAAGTATCTGTTTAGAACAGATTTCTAAAACTTGGTAGTTTAACTGTCTTTCTGTTTACTTT TCTTTTATTGGGGGTGAGTATAATAATATCTAGTTTATGGGTAATTTTTTCTGTAATTTCGGTACCTTATGTCTATAATT CAGCAGAGATCAATCATGATTTGGATAGTCAATGTAGAGATTAGTTATCCTTCTATATTTGGCATTGAAATTTTAACCTT GGGAAGGAATTTAAGCTCAAGTTACATGACGCAACCAGACAATACCTGCACAGGGGTACAAAATCAAATTACCAAAAAGT AAATAAATACTTGTATAGCATTTGTTAAATTTAAATGGCTATAATATATGGCG
CDS sequence (LotjaGi4g1v0121300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAAGTCCATGAAGAAATCCAAAATCGCCGGCAACCTCGCCGCCGTGATCACAGAGGCTCCACCACCGCCTTCCTC GCCGCAACAGTCGGATCCCTCCGCCTACCTTCAGCTCCGGAGCCGCTGCCTCCTCCGCAGGGTTCCGCCCGCAGCCGCCA ATTCCAGGCTCCGAGAGAGTTCGCCCAAAACGCCGTCGTCTCGGTTCTGTGTGCAAGAGGAGAACGCTGATGTCGGTGCG GAAGATTCTTTTGGAGAAAATTTCTTCGAGGTTGAAGACAGAGATAGAAGCACAAGGGAGAGCACACCTTGTAGTTTAAT AAGGGATTCAAGTGCCATTGACACCCCAGGTTCAACCACAAGGCAAAGGAGGCACCACATAGTTCATCCACACATTCAAA GAAATATTCCAACGGCTTACGAAATGGAGGAGTTCTTCGCTTGTGCAGAGAAGCAGCAACAAACAAAATTTATGGACAAG TACAATTTTGACGTTGTGTATGAAGTACCTCTGCCAGGACGGTACGAATGGGTCCCAGTACTTCACTAG
Protein sequence (LotjaGi4g1v0121300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKSMKKSKIAGNLAAVITEAPPPPSSPQQSDPSAYLQLRSRCLLRRVPPAAANSRLRESSPKTPSSRFCVQEENADVGA EDSFGENFFEVEDRDRSTRESTPCSLIRDSSAIDTPGSTTRQRRHHIVHPHIQRNIPTAYEMEEFFACAEKQQQTKFMDK YNFDVVYEVPLPGRYEWVPVLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 182 | 182 | 9.1E-57 | – | |
| PANTHER | 1 | 182 | 182 | 9.1E-57 | – | |
| MobiDBLite | 1 | 69 | 69 | - | – | |
| PIRSF | 1 | 182 | 182 | 2.6E-41 | ||
| MobiDBLite | 92 | 124 | 33 | - | – | |
| MobiDBLite | 103 | 118 | 16 | - | – | |
| Pfam | 134 | 180 | 47 | 1.7E-17 | ||
| Gene3D | 137 | 182 | 46 | 1.2E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Cyclin-dependent protein serine/threonine kinase inhibitor activity | Stops, prevents or reduces the activity of a cyclin-dependent protein serine/threonine kinase. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Cell cycle arrest | A regulatory process that halts progression through the cell cycle during one of the normal phases (G1, S, G2, M). |
Expression pattern of LotjaGi4g1v0121300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…