Transcript — View — Lotus Base

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LotjaGi4g1v0124900.1

Overview

Field	Value
Gene ID	LotjaGi4g1v0124900
Transcript ID	LotjaGi4g1v0124900.1
Lotus japonicus genome version	Gifu v1.2
Description	Coiled-coil domain-containing 90B, mitochondrial; TAIR: AT2G16460.1 coiled-coil 90B-like protein (DUF1640); Swiss-Prot: sp\|P43557\|FMP32_YEAST Protein FMP32, mitochondrial; TrEMBL-Plants: tr\|I3SJ98\|I3SJ98_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0124900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:18199812..18203580) extracted from Lotus japonicus Gifu genome v1.2.

CCCGTCCAAATTTTGCACAGGAAAGAAAGCGATCGTAAACAAGGAGATTCCTTTTTACACTTTCTTCCCCTTTGTTTATT TGTTTATGGGCACTTCTCGTCCTTGAACTTTGATGGGTCATTCACCAAGGTAGGTAACCGTCCATTTCACACTTCCCAAG GCAAACATTGTTTTTTTCTGTTCTTATAAGACTCCCAAATTTTCATTCCCATCCCGTTTGGTTACAGAGAAAACAAAGGA AAACGCAGGAAAATCCACAACATTTTGCATCCAATTTTCTGCTCTCGAGTTTGGATAACCGCCCATTTCACACTTCCCAA CGTGCCTTTTCCGCGCGAATATAAATCTCTGGATTTCGTTCTTCGTTCGAGGGGTAGTTTGACTTTGCTGCGAAGGTTTC TGCGTCTCGATTTGAATTCAGAGCCTGAAAATTGTGTGTGGATTTTTGGGTTTCCCCCAAAAATGGGCGTGATTTGCAAG CGGGTGAAGCAATTAGCTAGATTCGGAGGCTTTAGGGTTTCAAAAGTGCAATCATCATTTGAAAGACCAATTTGCAATCC ACTCTCAGCTTCTTCGCCTTCGGTTTCGGGTACCAGGCATATTTCTGAACTGGTGAAATCAAATGGGAAACACTTGTTCC TTGTTGACACATTGGCCCTTGTAATTTTCATTCATTACTTTATTCATTTCCATTGTTTTTGTTTCCTATTTGATTTCATT TGAATGTTTCAAGTTTTAATGGTTTTGTTGTTTGTTTGATTTTTGGTTTGTAGGTTAGGAGACTAGAGGGGCAAGGAGTA CCCTCAAAGCAAGCTGAGGCAATAACTGCTGCCATAACTGGTGTTTTGAATGACAGTCTTGAGAATGTATCTCAGTCATT GGTGTCAAAAGGAGAAATGCAAAAAGTAAGACCCCTTGGTGCCAAATACAATCTTGTTTTTTACCCCCTTTTGTTATTAT GTATGTATGAGTGTACAGTTTGTGTTGCGCTGTCGACATTGTTTTATAGCATGTTTGGATCAACTTTTCTTTCAGAACAA TTGATAGTGAAATCTAAAACCAAAAGCTAATCATATATAGTGTGTTTGGTTTTGTGTCCTCTCGCTAAATTTGGCGTCCA TTGCACTCGAGCTACTATTTTGTAGGCTTGTAGCTTCACTCTCATGCGGTTTTACTACATATGCGATTCTACCTCTCTTT TCCAGACATACACATAAGCTTCACCCCAATTTGATTTTGGCTTTAGAATCAATTGTTGAAAGATTTCGAAACATGTTAGA TACAAAATTTGTGCACTAATAAAAGCTGCTTTGCTCTTGTTTTGTTGAAGACTGAAATGATTCAAGAATCCAACCTGTCC AAATTCAAATCAGAAGTACAGAGCTCCCAGGTATTCATTAATTATGTGGCAGTGATATGTGTGGAGTTTGAGGTTTATGA TTTTGGTGCAAGCAGATGAACTGAGTTAGTACAAGTAGTGAGCATGCTAGGACTGAATAAAGGACGTCTCTATTGCATAT ATTATATACTATATGCAGCCAGCAGGTGTCCTACTTTACTGATGCCATAAATATGATTTTGCAATTACTTATTGACAAAA CACTTAAGGGGTGCATCCAGCATCTCAATTGTTCTGTTAATGCTAAGTAATCATTATTGTCTTTGATTAATAAAACATGC CAATGACATTGTTTGGCTGAGCTATCTAATACTTAAGTAATAAGAATGAAGCTTTCTAATATCTTATATTTGTAAAACGA GATGTATAGAAAGCAAAGAAAGAAAGCGAACACAAATTGTAGTTAAATCCCTTGTCTGGTTTACCTATATATTTGAAGAA TTTCAAACCAAATGGGCTGTTTGTGACTATGTGTCAGTTTGGATGCAGACTAAAGAACACTTACTGTAGCTTATTTAATG TTTTGTTTAATAGATAAGCTCCGATCAATAAGGGCTCTTTAGCCAGTATCCAAACGGGATCATTATGCTCTTCAAATTAC TCATATGTGTTTCTTCCCATGGTAGGATTTTCAGGGGCAATGAATGTAATCCTCCTTTGATGGGCAAAATCTGCTTTGGT CGGGTTTTGGAAAATAAATCGATCCCGGAGAGGCCCGGACAGGGATGAGTTTGGGTTTGAGGGTGCAAATACCCGCCCCG ACCTGAACCCGCCTAGATGTAATAATTAAACAAATAATTAAAATAGCAGTTTAATGATGATGTTTAACTCGCTTAAAATA TGATTAAGCTCTTAATTTTTTTATATTTTAATATTCTTGATGTATATTTTTACAAATCATTTGAATTAAAATGTGTTTTC TACATTATTTATTTAAAAATATATTTAAGTGCATAAGATCAGATAAAAAGATTTAAAAATAATGAAGATGTGAGTTCCCC ACGGGTTTCCCCAACCCGATGGGGATGGAGTTGTGTATTATATTTTTATCCCCACCTTCCTCAAACCCGCCTAGCTCTTA ACAGGGGCAGGGATGGGGAGAGAAAAACCCACCCCCACCCTGCCATGCTTATCCGTTTCTTTAGAAGAGTGATTCTAATG GTTGGACACACTATAAGTTTGGTTGGTTCTATTGCATTATGTTGGGAGATATTTATGCTGGGAGGACATAGGGATCTATT TCATTTACTTTTTTATTTGCTTGGCCATGATTTCATATTTTTCTTTATCTTTGTAATGTTAATCTTAATTTGTTTGTTTT ATTGATGGAGTTGGTTTTGTTTGCCTGCTGCTGTAATATGATGAAAACTTATGATTCAGGGACACCATTTTTCTCTGTTG CAACATGAGACTGAAAAGCTTAGGAATGATATAGAGAAGATGCGCAGTGAATTGAGGTATATCTTATTAATTTTAGCAGT TGGCCATGATTAACTACTACAGCTGTGTTAATTTGTTATGATTTTTATGGTGCAATCACATGGATTGTGATGCAGATATG AAATGGATAAGGTCACCGCTGGGCAACGATTGGATATGAACCTTGAAAGGGGGTAAGTGAAGAGAAAATATTCTGATTGT AAAAGATTACAGATCCTTAAACTGAAATTGTTGTTTTTCACTGTTACTGCTGCTGATCACGGTAAATGCAGGAGAATAAG GGAAGAACTGTCCAACCAGAGTGCTGAAAATAGCAGCCTCACAAACAAACTTGATAGAGTAAGCACATACGTGACATTTA GAAGTAGATTTTCTTTTTTATTTTCATCTCACGCCATTAAATTTGGGCTGTAATATTCAGGAGATCCATTCTTTAAGAGC ACAGATGGAAGCAGCCAAATATGATGTCATAAAATACTGCATAGGATCACTTGTTTCAATCTCTGCTGTTGGCCTTGCTG TTATCCGCATATTGATGTAAACTGGTGTGCGTTTCGACTAAGTCCACAAAATTTGTGGTGGAAAAGAATCAAGAGTAGCT GTTTTTTAGATGCTGTATGTTCTGTCAGAAACAATTGCAAGACAGTGCTCTAATGGAGCTGAAGCAACTTACTCCCATTA GGCATGAATTGGGCCTGTTTTTTTAGCCCTATTCTATTCTTTCTATTACTTGCACAATATGTGCCTGGCATTATGGTACA CATACACGCACCTTGGATTATAATCGTCTTTTTTTTTTTTTTCTGTACTTGAGCAGATGAATGTACAAGCTACATGTGTG ATCTCAAAATGCACTTTAACATATATGAACAGAATCCCATTTTTTTAGACAGTCAAACAATGTCCCTACTCTACCTTTCA TTTTTCTCT

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0124900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGCGTGATTTGCAAGCGGGTGAAGCAATTAGCTAGATTCGGAGGCTTTAGGGTTTCAAAAGTGCAATCATCATTTGA AAGACCAATTTGCAATCCACTCTCAGCTTCTTCGCCTTCGGTTTCGGGTACCAGGCATATTTCTGAACTGGTGAAATCAA ATGGGAAACACTTGTTCCTTGTTGACACATTGGCCCTTGTTAGGAGACTAGAGGGGCAAGGAGTACCCTCAAAGCAAGCT GAGGCAATAACTGCTGCCATAACTGGTGTTTTGAATGACAGTCTTGAGAATGTATCTCAGTCATTGGTGTCAAAAGGAGA AATGCAAAAAACTGAAATGATTCAAGAATCCAACCTGTCCAAATTCAAATCAGAAGTACAGAGCTCCCAGGGACACCATT TTTCTCTGTTGCAACATGAGACTGAAAAGCTTAGGAATGATATAGAGAAGATGCGCAGTGAATTGAGATATGAAATGGAT AAGGTCACCGCTGGGCAACGATTGGATATGAACCTTGAAAGGGGGAGAATAAGGGAAGAACTGTCCAACCAGAGTGCTGA AAATAGCAGCCTCACAAACAAACTTGATAGAGAGATCCATTCTTTAAGAGCACAGATGGAAGCAGCCAAATATGATGTCA TAAAATACTGCATAGGATCACTTGTTTCAATCTCTGCTGTTGGCCTTGCTGTTATCCGCATATTGATGTAA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0124900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGVICKRVKQLARFGGFRVSKVQSSFERPICNPLSASSPSVSGTRHISELVKSNGKHLFLVDTLALVRRLEGQGVPSKQA EAITAAITGVLNDSLENVSQSLVSKGEMQKTEMIQESNLSKFKSEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEMD KVTAGQRLDMNLERGRIREELSNQSAENSSLTNKLDREIHSLRAQMEAAKYDVIKYCIGSLVSISAVGLAVIRILM

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	212	212	-	–
PANTHER	PTHR14360:SF17 View details on PTHR14360:SF17 Search for proteins/transripts with this domain View external data on PTHR14360:SF17	34	236	203	6.0E-114	–
PANTHER	PTHR14360 View details on PTHR14360 Search for proteins/transripts with this domain View external data on PTHR14360	34	236	203	6.0E-114	IPR024461 Show description in modal box View details on IPR024461 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF07798 View details on PF07798 Search for proteins/transripts with this domain View external data on PF07798	61	235	175	8.7E-74	IPR024461 Show description in modal box View details on IPR024461 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	134	154	21	-	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	213	235	23	-	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	213	235	23	-	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	236	236	1	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0124900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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