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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0125400 |
| Transcript ID | LotjaGi4g1v0125400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT2G13370.1 chromatin remodeling 5; Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A0S3RTA1|A0A0S3RTA1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0125400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:18251839..18253256) extracted from Lotus japonicus Gifu genome v1.2.
AGTCAAAAGGATTTGAGGCGATTCTGGTTGTCGTGGATAGGCTGTCAAAATACTGTCATTTCCTTCCTCTGAAACATCCT TATACTACCCGAAGTATTGCAGAGCTGTTTGCCAAGGAAATAATCCGATTACATGGCATTCCTTCCTCCATCGTCAGTGA CCGCGACCCCTTATTCATGAGCCACTTCTGGAAGAAAATTTTTCGTCTACAAGGCACCCAATTGAAGATAAGCTCCGCTT ACCACCCTGAGTCAGATGGACAAACGGAGGTCGTGAACCATTTCCTAGAGACATACCTTCGCTGTTTCTCTGCTGATCAA CCCAAGACATGGGTATGTTGGTTACATTGGGCCGAATTTTGGTTCAATACCACCTTCCATTCTGCGGCAAATCAGACCCC TTTTGAGGTGGTTTATGGCCGCAAACCTCCGGCTCTTCCTCGTTGGGGACTCGGGGAGACTAGGGTAGAGGCCGTGCAAC GTGAATTGCTGGATCGTGATGAAGCCCTACAACAATTACGCACTCAGTTGTCTCGCGCGCAGGACTGAATGCAATCTCAG GCTAATGCTAAGCGGGTTGAGAAATCTTTTGAAGTAGGAGAGTGGGTCTTCGTCAAGTTGCGAGCACACCGTCAACAATC GGTGGTAACCAGGGTGCATGCTAAACTCGCAGCGCGTTATTATGGACCTTATCCGATTGTAGCTCGCGTTGGGGCAGTGG CATACCGTCTGCAATTACCTGAAGGCTCCCGCGTCCACCCTGTCTTTCACATTTCTCTTTTGAAGAAAGCAATTGGAGAG TATGAACCTGCAATGGATCTTCCAGACCACCTTGAGGGAGAAGGAACGGAGGCAGTCAACCCTGGGAACATACTCGCGAC TCGTACTATTTCTGCACAGGGAGAGGACATCCCTCAAGTGTTGGTCCACTGGCAAGGTAAGTCCGTAGAGGAGGCCACGT GGGATGATGTTTTAACCATCAGAAGTCAAATCCCTACCTTCAACCTTGAGGACAAGGTTGCACTTCTAGGGGGAGGTATT GTTAGGACCGGTGACATGGGCTTAGGCTCACAGGATCATTTAGCCCAACAAGTGACTAAGGGACCCAAAGTTTGGCAAGT CTATTCTAGAAGGGGCAAGATAGGGAATAGTGGGTAAATTCCTAACGGAATGGTAAGAGAAAGTGATTGTAAAAGTTCCC TAATTTAAGGAAAGTGAGTGAGAGGTTGAGAGGCACCTGGGTTATTTCTGTTATTAGATATGAGTAGGAAGCTAGTCCTA TAGGAGCTTAGCTCTGGGCAGAATTCCTGGGAACCATTCCCTTTCTGTAAACATTCCAAAGTCCATTAATAAGCAATCAC TGTTGTTTTTCTGTGTTCATTTTCCTCTGTTTTGTGTGACTAAGTTGGGGTTTCTAAC
CDS sequence (LotjaGi4g1v0125400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATCTCAGGCTAATGCTAAGCGGGTTGAGAAATCTTTTGAAGTAGGAGAGTGGGTCTTCGTCAAGTTGCGAGCACA CCGTCAACAATCGGTGGTAACCAGGGTGCATGCTAAACTCGCAGCGCGTTATTATGGACCTTATCCGATTGTAGCTCGCG TTGGGGCAGTGGCATACCGTCTGCAATTACCTGAAGGCTCCCGCGTCCACCCTGTCTTTCACATTTCTCTTTTGAAGAAA GCAATTGGAGAGTATGAACCTGCAATGGATCTTCCAGACCACCTTGAGGGAGAAGGAACGGAGGCAGTCAACCCTGGGAA CATACTCGCGACTCGTACTATTTCTGCACAGGGAGAGGACATCCCTCAAGTGTTGGTCCACTGGCAAGGTAAGTCCGTAG AGGAGGCCACGTGGGATGATGTTTTAACCATCAGAAGTCAAATCCCTACCTTCAACCTTGAGGACAAGGTTGCACTTCTA GGGGGAGGTATTGTTAGGACCGGTGACATGGGCTTAGGCTCACAGGATCATTTAGCCCAACAAGTGACTAAGGGACCCAA AGTTTGGCAAGTCTATTCTAGAAGGGGCAAGATAGGGAATAGTGGGTAA
Protein sequence (LotjaGi4g1v0125400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSQANAKRVEKSFEVGEWVFVKLRAHRQQSVVTRVHAKLAARYYGPYPIVARVGAVAYRLQLPEGSRVHPVFHISLLKK AIGEYEPAMDLPDHLEGEGTEAVNPGNILATRTISAQGEDIPQVLVHWQGKSVEEATWDDVLTIRSQIPTFNLEDKVALL GGGIVRTGDMGLGSQDHLAQQVTKGPKVWQVYSRRGKIGNSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 166 | 148 | 5.2E-39 | – | |
| PANTHER | 19 | 166 | 148 | 5.2E-39 | – | |
| SUPERFAMILY | 68 | 147 | 80 | 1.18E-8 | ||
| CDD | 122 | 153 | 32 | 3.16456E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0125400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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