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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0125600 |
| Transcript ID | LotjaGi4g1v0125600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT5G11280.1 tail fiber; TrEMBL-Plants: tr|A0A151SGW7|A0A151SGW7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0125600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:18268827..18274904) extracted from Lotus japonicus Gifu genome v1.2.
TTTAAATCGTAATTATAAGTTTTAAAATAAATAATGATATTTTTATTGTTTATTTGAAGTGGATGTAAAAACTATTTTAC ATGCTTTTTTATTTTGTCAACATTATAATATGAGGCATATTATTATTAAAAGTGATTTGTCGGTAGTTATTTGTTGGGTG AATGTAAGATGCATAGATCGTGGAAGATGCTAAATAATTTGAACTTGGTTGATTTTTTATGTTAGAGGTCAATTGTGTTG GTGATTTTTTTCCCCGAAAGAAAAATGATTTATATTGATACATGAACAATCTGAAAAAAGATTGTAAAGTACAAATCCCC AGTAAGTTATAATCTACAACGTGGATTGAACAAAAACTCCGACCATAAAAGATAAAACGCCTAAAGAAATCCCAGAAAAA TTCCATGGATCACCAAACAAGATCCCAACCACACAAAATTTTATTATATTCAATAATAGTCAAGATATAAATCCTTTTAA TATTTATATTTATGGAATTAAATTATTTTTTCTTCGAGATACAAATATAGATGCCTGGAGCAATGCATGCTATTTGTTAC AAATGGCCTACATTTTCATCTTATATTTAATCTTGAAATTTAATTACTGTACAATAGTTGGAATTCAGTCAACAAAAATT ACGGTGAATCCTTATGTTCTTACATTTCGTCTATAATTGTTGCATAACAATATCACTCTTTTCTTCTTCTTCTTCATCTT TTTTTTTTATTTCCCTCACTTTCTTCACGTAAAACAAACAAAGCCTTTCAATCAACAGAAATCCAAAATGCTGCAATGGC TTTTTCTACAAGATTGGCCACCCTCATAAGCTCCATTGCTTTTTCAACGTATTTCTTTATCGTCATTTTCCAAATTCCCA TTTTTAGGTATCACACCATTTCCCTTAAATCCCTATTTTGTAATGTGCCTCTTGTTTCAATTTTTGTTTGTATCCAAAGA CTGTGTTTCTTGTCATTTTCTTTCTAATTTTTTTAATCTTCTGTCAGAAACAAGATTGTATTTTTCTTGAAATCAGATTA TTTTGGATTAAATTTCCACATGTTGGGGTTAATGTACCTTCTTCCAATGTGTATCTTTCAATTTTTGTGCACTAGTTTTC TGATGTTTTGATTTAGAGCAATTCATAGAGCACCTCATTGGACTAACAGAAAGAGGTGCAAAATCCACTCATTGTTATAA ATTACTCCTAGTATACTAATATTAATTGGGTTCATTATTGCATTGTCCCCTCTGATTCAGGGTCATGATAATAATGTATG TGTGGAACCCTTTATTCCTGCAATTATTAACCCCACAAAAGCTTGAAATATAGTTCTAAAAGTATTATGGGTTTCTATCT TTTGAATGGTTTCGTGTACTTTGATTTGTTTGTTTTTTGTTTTGCCGGAGGTTGGATTTACCTCTTTGGGATTCTTTGTT GAGAGAACTTGTATCTCGACGCATTCATCATGTTATGAAAGTATTGCTTTTAAATTCTATTTGCATTATGGTGATGATAC TCTCAAAGTGCCCCCATTTATTACACAGGGTTCCATGTAGAATGGGAATATGTAAGACACCATTAGAAGTGACATCTTCT CAGTTAATTGCAAGTGAGGTCTTCCCTCTTTTCATAGTGAAGACTCTTCTCTACCCTGGTGCTTTTGCAAAGGCAATTTG CAAGCAGAAAAGCATCCCAACCTATGCAAATTTGCTCAAGTTGCATAATTTTAGGGCAAGAGCTATGTCTGCCACATCTG ATCTCCAACACCTTGAGGTTGACAATTGATTAGTTACTGAGAACAATGCATCTACTAGTATTGATAAACACCCTGAAAAG TTTAGCTTTGGTATTCATTTTCATTTTGGGTCCCTCTTGCAGGTTCTGGCTGGAAGCTATTTGGCTGTGGGAGGAGCAAT AGCAGGTTTGATAAAACCGGGGAGAATGAGCCTTTTTGGAATACTACTTCTGATGTGGGGTCTGATTATGGGAAAATCTG GTTTCAGTCATGATACAGGTATCCATATCTATCCAGCAATGTATGTTGTGCTACTCTCAGCATTCTTCTCCATTAGGAGG GATGTCAGAAAGATAATCCGTAGCTTCAACCTAAAGCACATTGTGAAGGTAAAACGCTTCTAAATGAAAGGCAATTAGCA TGGATGCATTTATGGTGTCTGTAATGTGCTAGGAGATGCTTCAATCTGACAGGTAGGTAGTAATAGTTTTAGCACTTGTG CTTACTGTTCAAGGCAATTGGAACCACAAGAATATAAGACCTTCTAATCTTAGGTTAGCTAGTGGAGAATATGCAGCAGG AATTTTATTCCTTATGCATGGATGAGAATTAGTTGTAGACATTTATTTAGTGGCCTGATTTTTCATTTTTAAGTTCATTG TTTGTTAAATGATAGTTAATTTGCAATTGTTTGTTACATTTTGTTTAAGTGTCTTTATGCATTTCTTAGGGGTTACAAGC ATATTAATACTTAATGGTTACAAACGTAATAATGTTAGAGGTTAATGTCTTTTATGTAATTGCATGAGTTACATCCTTTT ATCTTCTCTATTCTCTAGTATTAATAGAGAAGCATTGTAAGTTCTTCATTAAGAAAATCAGAAAAATAAAAAGTTCAAGT CTTCTCCTATATTTTCCACTACTTTACTTCCGCTGCTCCAACATTGTTGTTGTATAGAACAGGGGTTTGACAATTTTTTT AGAAGGTGTATAATGCAGCTCATTCTGGACTTTTGGCACCTGATTTTCTTTGTCAATTTATTGTTGTTGTTCTTAGTAGA GTTTGTAAACTTAATCATACTAAAGCATAAAGCATGTAGAAGATGGATCTTAAAAATTCAGTCTTCACACAATAAGAATG GTTATGGAGTACTAACCTCTATTCATGAGTGTGATTGATCCCATTTGATCTTGTAGAATGTGTGTAGATTCTATGTTCTT CAAAAATGGAGAAACTCTTCTATTTCCTTCCGTTCCTTCTATCCTCTTTCATTCGTGATGACAATTATAGAGACATACTT TTACTTTATGGGCAGAGATAGAGACAATGTTTTAAGTCCTTCATCAATAGTTATTTTCTTTCATATAAAGTCATATCTCT TTATTCAAGAGTTATGTCACTTCACTTAAATATCAAACAATACATTCATTTATTTAATTATTGAATCAATTAATTTAATG CATCACATGAGACATTTCTTTCAAAGAAGACTGAAGACATCTCAATAATTAAACTGCTCAAGAGGAAGTGCTACTACGTA ACACTCACTTTAACATTCTCTTTTCGACGCTATTTTCTTTAAATGGTTGAAAATTATGTAGATTCTACTAAATTGGAAAT GGAGTCCATATATAAACTTCGCTAAATCAGAAAGAAAAAAAACCGTTAAATAAGTGTTGTCAGAATTTTTCACTTGTTCA ATATTGATATAATATCTAAACTCGTTAGGTTGGGTTTGGATTATTAAAACAACCACCAGATGGGCTAGAAATTAATTAAG CTAGTTCTCTTTAACACAGTGGACCTCTGTGCTTGGGCCTCGACTTGGGCCTATTATCATAGTTATTTTTCTCTGTCATA GCCATTCAATTATTCAATAAAAAAAGTCATTGAATTAGATATACCTTTCTAAGCATATTAAGCCCAACAACATATCCTTG TTCAGTATTGTAGTGTGGAGGGACCAACGACTAAAATGGCGTAATGGTTGATTCTAGACCAAGAATATGAACAGAAGAGT TCTCCCCTATTTGGTTAGGGCTTAGTGTAGAATTTGGATACTTTGAGAATGAAAAGATTCAATCATTTCATCACTATTGA AATGTATGAGATGAACTAAATTCTTAATTTTATAAAGACCATTTCAATTCTTTAGAATACGAATTAGAAGTAAAAACGTA CCTGAATCCATTATTTGTAAATGTACGTAAGATGAAGTTCAAAATTAAAAGTAAGATGGAGAGGCTAATCTTCGAGATTG TCAATGTATGAAGTTTCTTGATATTCTCTAGAAGGGGAAAAGACATTTTCATGACACGGGGAGGTCCTATTCTTGAGTTT CAAGAGAGATCAAAGATGTGACTCCAAGACATCAAGATAAGGCCCACCACCATTTATGAACTTGAAGCAGAAATGGCTAA TTAATAGACAGCTGGACAAATGAAAGTTTGGGTTCCCAAAATGGCTGAGACAAACACACCGCCAATCAAGCAGTTGCAAC CGTTGAAGTCTTTATCAAAGACAGACCAAGTGCTCTCTATAATTTCACAATGTCCCCAAATTATCATTATTCAAAAGGCA ACAAGGGTCTACAATCAGAATTAGAATTCTCACATTGTTCACATGATTCACCATCTCGTTTTAGGGACACACTATAATGA TTTCCATCAAAAGCGTCAACCCTCAAATTATCATTATCCAAAAGGCAACAAGGGTCCATAATAAGAATTAGCATTCTCAC GACTTTAGAGTTATTGTTCACATGATTTACCATCTCGTTTTAGGGACTCACTTTAACGATTTCCATCAAAACGGTCAACC CACAAATTATCATTATCTGAAAGGTAACAAGGGTCCATAATCAGAATTATCATTCTCACAACTTAAGGTACATTGATTAA CCATCTTGTTTTAGCAATTACTATTGAAGATTTCCATAAAAAATGACTACCCGCAAATAATTATCAGAATAGCATTCTCA CTACATCATGGTCATTGTGCACATGATTAACCATGTCGTTTTAGGAACTAATTTTACGAACTCGCATTGATGATTACCAT CAAAAGGGTCATCCCTCAAATTATCATTACCCGAAAGGCAACAAGGGTCCATAATGAGAATTAGCCATCTCACGACTTTA GTTTCATTGTTCACATGACTAACCATTTCGCTTTAGGGACTTATTTTATGGATTCGCATTAATGATTTCCGTCAGAAGGG TCAGACCTCAAATTATCATCATTCGAAAACCAACAACGATCCACAATAAGAATTTTCATTCTCAAGACTTTTGGTATCAT TGTTCACATGATTAACCATCATAATTTAGGGACTCGCATGGATAATATCTGTCAAAAGGGTCATCTCTCAAATTTTTATT CAAATGGCAACAAGGGTCCATAAATAGTATTAGCATTATTGCGACTTTAGGTTCATTGTTTAAAAGATTAACTATTTAAT TTTAGAGATTCACATTGATGATTTCCTTCAAAAGGGTCTGCCCTCAAATTATCATCAGTCGAAAGCCAACAAGGGTCCAT AATCTGAATTTGCAATCTCACAACTTTTGGTATCATTGTTCACATGATTAACCATCATAATTTAGAGGCTCGCAATGATG ATTTCCGTCAAAAGGGTCATCACTCAAATTATTTTAAATAGGCAACAAGGGTAAATAATCAAAATTAGCAATCTAACGAC CTTAGGATCATTGTTCACATGATTAACTATCTTGTTTTAGGGACTTGTTTAGGGAAATCCACTGATGCTTTCCATCAAAA GGGTCAGCCCTTAAATTATCATTATCCGAAAGGCAACAAGGGTCCATAATGAGAATTAGACATCTCACTACTTTAGGGTC AATGTTCACATGATTAACCATTTCGCTTTAAGGACGTGTTTTATGGACTCACATTAATGATTTCCATCAAAAGGGCCAGA CCTCAAATTATCATCATTCAAAAACAAACAACGGTCCATAATAAGTATTCTCATTCTCACGACTTTTGGTATCATTGTTC ACAAGATTAACCATCATGATTTAGGGACTTATTTTAGGGACTCGCATTGATAATATCCGTCAAAAGGATCATCTCTCAAA TTATTATTCAAAAGGCAACAAGGGTCCATAATCAGAGATAGCATTCTTGGGACTTTAGGGTCTTAGTGTTCACTTCATTA AGCATCTTGTTTTAGGGACTCGCATTGATGATCTCCATAAAAAGTGTCCGCCCTCAAATTATCATTGTTTGAAAGGCAGC AAGGGTCATAAACTCATAATCTAAATGTGCAATCTCACGACTTTGGTATAATTGTTCATATGATTAACCTTCAGAATT
CDS sequence (LotjaGi4g1v0125600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTTTCTACAAGATTGGCCACCCTCATAAGCTCCATTGCTTTTTCAACGTATTTCTTTATCGTCATTTTCCAAAT TCCCATTTTTAGGGTTCCATGTAGAATGGGAATATGTAAGACACCATTAGAAGTGACATCTTCTCAGTTAATTGCAAGTG AGGTCTTCCCTCTTTTCATAGTGAAGACTCTTCTCTACCCTGGTGCTTTTGCAAAGGCAATTTGCAAGCAGAAAAGCATC CCAACCTATGCAAATTTGCTCAAGTTGCATAATTTTAGGGCAAGAGCTATGTCTGCCACATCTGATCTCCAACACCTTGA GGTTCTGGCTGGAAGCTATTTGGCTGTGGGAGGAGCAATAGCAGGTTTGATAAAACCGGGGAGAATGAGCCTTTTTGGAA TACTACTTCTGATGTGGGGTCTGATTATGGGAAAATCTGGTTTCAGTCATGATACAGGTATCCATATCTATCCAGCAATG TATGTTGTGCTACTCTCAGCATTCTTCTCCATTAGGAGGGATGTCAGAAAGATAATCCGTAGCTTCAACCTAAAGCACAT TGTGAAGGTAAAACGCTTCTAA
Protein sequence (LotjaGi4g1v0125600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFSTRLATLISSIAFSTYFFIVIFQIPIFRVPCRMGICKTPLEVTSSQLIASEVFPLFIVKTLLYPGAFAKAICKQKSI PTYANLLKLHNFRARAMSATSDLQHLEVLAGSYLAVGGAIAGLIKPGRMSLFGILLLMWGLIMGKSGFSHDTGIHIYPAM YVVLLSAFFSIRRDVRKIIRSFNLKHIVKVKRF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 191 | 191 | 4.4E-85 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 191 | 191 | 4.4E-85 | – | |
| Phobius | 7 | 27 | 21 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 28 | 105 | 78 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| Phobius | 106 | 124 | 19 | - | – | |
| TMHMM | 120 | 142 | 23 | - | – | |
| Phobius | 125 | 130 | 6 | - | – | |
| Phobius | 131 | 148 | 18 | - | – | |
| Phobius | 149 | 153 | 5 | - | – | |
| TMHMM | 152 | 171 | 20 | - | – | |
| Phobius | 154 | 171 | 18 | - | – | |
| Phobius | 172 | 193 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0125600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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