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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0127400 |
| Transcript ID | LotjaGi4g1v0127400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger (Ran-binding) family protein; TAIR: AT2G17975.1 zinc finger (Ran-binding) family protein; Swiss-Prot: sp|Q8GZ43|YZR3_ARATH RanBP2-type zinc finger protein At1g67325; TrEMBL-Plants: tr|I3SE82|I3SE82_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0127400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:18580157..18584679) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAATGATCTAATTATTCCATCACAGAGCAATCACTAATCCCCACCGAATCCCCATAGACAACCAAGTATTCATAACC ATGATGATGTACAATTTTCAAAATCAAGAGATTATACTCACATTGATAAAGAAACCCCCAAGTACAATATGATCATCCAC TTGGAGCCAAACTTCCTCTTTCAAGCATAGGCCTAAAATTGAAATGGGCCTTGGCAAAAAAATCTAGAACAAAAATATAA TTACACTTTTTATTAACATGAGTAATATCATATCGGTTTTCTCTTCTTCGTTCTCTCCCCCTCTCTTCTCCAAAACCAAA ACCCAATCTCTCTCTCATTCCCTCGTCACAGTTGACTCTGAAACCCATTCACACACACACACACAAGCACACGCAGTTGA GAGAAGAAGAAGAATGGGGGAAGGGAGAGAAGGAGATTGGGAGTGCAGCAGTTGCAACAACCGCAACTACGCTTTCAGAT CATTCTGCAATCGATGCAAGCAACCCCGTCTCCTCGTTGATACCAAAACCCCTGCTGATTCCAAGTGGCTCCCTCGTATT GGTGATTGGATCTGCACCGGTTAGCAAAACCCCTCTCTCTTTCATTCTTTCTCTATGTACTCATTGCTAGGTTTAATCTT TTTTGGGATTAATGTTTCTTGCTCATGAATATGGTTTCTGAATTGGGTGGTTTAGTTTTTCTTGCTGTTGCTTTCACTAT TTTTTATTCTTTGGGGTTTTGATTCTGCGGTACTTCTTGGGAAATAGAGGAAACTGTATGTATATAGATTCAATGTTAAG TTGGTATTTGTGAAAGAAAATGAATGAAATGGAATTAGATATAGTGTTAGAAATATAATAAAAGAGTCTCTGTGACCAAG TGATATAGAGTTCGATCCTTGTTGCCCTCATTATTCTAATAATAAAAAAGAAGTTGAATTTCTGTATACGGTACAGTTTT GTCAAATCGCGATCACGGACCATTGCGGTGAGCCAAAAATCCGCTATTTCGGCCACTATTTAGCGGGATTAGCGCGCTAC ATTGGGCAATGGCGGCGTCGCGATTTGATAACACTGATACGGTATAACAGTAAATGAGCCTGTCCACTGGCCACGCTTCA AGCTCAATGGTAATAGGCTCTTCAGTGAGGAGACGTGTTAGAAATATAATATAAAGCCAATATTGTGTCTTCACCTAAAT TTGAAGGTTTTTGGAATAGTGGAGTCATGGCAACCAGTTACCTGGCTGCTTCTTTGATAAACATTGCTTGCTTCATGTGG ACACGTACTGCATGTGGTCTGGGTATTTAGCTTAGGACATAGTGAAAGTTTGTTTGTCGTAATTTCAATCATGAGAAGTT CAACTTTAGCATGTCATGTGATTTTGGATTATGAGTTTCTGTTTCAATTTGAGAATGAAAGACCTTGCAATCAACTAGGT TGAGATGTTTGTGCTTTTTGTATGTGTATTTTGTGTGGGATGGACGGGTTGGTGTGCGTGGGACGTGTTGGTGTGCGTAT GCTTGGCTTCCTTTCCCTCTGGCTGGGTTTGTATGCAATGGAACCATAGGTTGCACTAACAACAATTATGCATCAAGAGA GAAGTGCAAGAAGTGTGGACAACCAAAGGAGGTAGCAGCCATGCCAGCAGTTGCAATGACCGGAGCATCTTTCCCCCCTT ATCCGCATTATGTTTCCAGGGCTCCAGGAGGACCAGCACAAAAGATGAACATTGGATTCAATGGATTGATCGGAAATGGT GTGCTACCGCAGCCACTGCATTTAAACTCCAATTGGCCTGTTACCGGAGCAGATAAGTATGGTGTCCATCCAGTTTCCAT GTGGCTACCTGGTGGAAATTATAGTTCTGGACATCCTTATGTAAACCCCTCCAGCCAGGACCTATCTATTGCGAAAGGAT GGCGCAATGGGGACTGGATCTGTAACTGTGGTTTCCATAACTACTCATCACGCTCACAGGTATGGTCTTGAATTATACGT CTAAATTATGTTGAGCTTTACAAGCATTTAAGTATCAGTTTTTTTTCCTGATTCAAATGTTGAAATGATTTGCAGTGTAA AAAGTGTGATGCTTTTCCACCTGGTATGGTTTCCTTCTCTACTTTAGATTTTACTTTTAGTTTTGTAATGCAAAGCTGTT TCTTTTATCAACATTTACTAGCTTCAAGTGCACTAGTCTTAAGAGTATACTGAGTTATGATCTTAGTTATCGATCGCGGC CCCTCGCCGCGATTCTGAAGCCATCGCGTCGCGAAACGCCGTCGCGGCTGTCGCGCCGCAAATCGCGGCCAGATCGCGGC CTTATCGCGCGAGATCGCGGCGCCACAAGAAGAAGATAAGTTACAGTTGTGGAAAAACCTAAATTGCCCTTGAAATTTTA TAATTAGGTTAAACTTTGAGGGCATTTTTGGGATTTTGCACATAAATAAATGAAACACGCGTTTCATCTCTCTCACTATT CATCTTCTTCTTTAGCGACCAGAACCCATGGCCACTGTGCGATCTTCTTCAGCCACCTTCGATCAGCACCCATGGCCACC GCCGACCACCGACAAGCACCGTCCAACTTCCGGCGAACTCTGTGAGGTGACTTTCAGCCTATCTCCGGCGACCACTGCCC TTGGGCCTCTGTTCTGCTCTGTTTTTTTTTTTTTTCTTTCCTTTCTTTTCCTCTTTAATTTTCTATTCTCAAACAATTCA TTTTGTTACCGGTTCTCTCGCGTGGCATCCTCTTCCTCCTCTCTTCTCTATCATCTCATCTATTCTAGATTTTAAGTTAT ATTGATCATTTTTTTAGCTGTTGTATGTATATACTATTATACTATTAATTATATAAAATTATATATAAAAAATCAAAATA GCGGCCATCCCGCTATCCCACTTTTGGGGTCGGCCGCTACGCGTTGCTATCCGGGATTGACTACTATGGTTATGATATGT CTGCTCATTGTGCTCATAAGAATATTATTGGTTATTTAGTATGTGGAATGAATTTTTTTTGAAGCGAATGGATATTAAAC TTCATGCTGTTTTCACTTTTTGGTGTAAAGCACTTGGGACAAAACGATTAGCTTCTGAAGAATTGGTTTATGACTGGGAC AACAAGAGATTGAATGTAGGAACTGTAAGGATTTCGTCTCTTTTTCATTTCTGTGGCTTAAATTTCTCTTGATAGTATAC CTGCTCTCTTTCTAATTTTTTAAATTCTCTTGACAACTCTTTAATTTTCTCCTCCACTTATATTCTTACTTTTAGTCTTA CACTTAACTATTTTATAGACAAATGATCGGCAGCACACATTTACAAGTTTAGAGCAAGCAGTGGGGAACAGCGCAGATCC TAAACCTGGAGTATTCCCTTCTTATCCCGGTATAAACTCAAGTACCGCTCCAAGTTTGCCAATGCCCCAATTGCTTCCAC CTCAAGTTTCTACTCCAGCACTCCTTGGAAAAGGGTAACTAATTCCTCTCCCCCGAGCTACATTTATGGATTGAAGATGT ATTTGTTATCTTTGTAATTATACATCTTAACTCTTAATGATGCCACTATCCTGGGCTCACAATTTAAATATATTTACCTA TCAGAGCGAAGCAATGGCGTAGTGGAGACTGGATGTGCACAAATTGCAACAATCATAATTATGCTTCCAGACTACACTGT AACAGGTTATTATCTCTTTCATATGTCTATATATAGGTTTAGAAGGCAAGTTGAGTGCCCTCTGGTTGAAGACAAAATTA TGCTAGTCATTTTGAATCCATTTAACATGTTCACATTCGCCATCACTCACTTCATTGAATAACCAATGCTCATAATTTGC AGGTGTAAAACCCAACGAGTGGCCCCCATGCAACCCGTCAATGTTGTGTAATGTTGAATTTTTTTAGTTATATTGTTGCT TGGCCTGGGTCTGGGGAGTTTTGCTTTTGATTATTTAGCTTGTATTTTGCCAAATTTTCAACAGGCTCATTATATTTCGC ACTAAGACATAAGTGATTTATGCTCAGTGGCATTGTATTTTGTTTTCTTTCAGAAGTTTTATGATTTTATAAATTTTTCT TTCTAACAGAGCATTTTGAATGAGTTATGATTATTGTATTCACCTGATTAGATCATTTATCCCTTCTGTCTTCTCCTCAA ATTTCAGTTATATTGTTATAATTTATAAGATTGTGGTTCACTAGTGTATTGGTGGTACGTTGATGCCCTTCAGTTCATAT GCCCAGACTTTGATATTAGTGTTCCGCTGAGTTTCAATGCTATTTGTCAATAACTGCGAACTTGAGAGTTTGCATAAAAT TCGCAATACTTTCATTAACCAATTATCCTAAAGCTTAAACATCTAGATAAAAGACACATAGACACATGAATAATTTTATA TTATATTTCTTACACGCCTATCACGCAAGAGTCCTTTGGGCTTAAAGTGTGAACAAATCATAGACCCGCCTGCTTGTTTG CTGAAATTTTAATTTTTATTCAAGACCACTTAAAAACATGTTT
CDS sequence (LotjaGi4g1v0127400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAATATCATATCGGTTTTCTCTTCTTCGTTCTCTCCCCCTCTCTTCTCCAAAACCAAAACCCAATCTCTCTCTCA TTCCCTCGTCACAGTTGACTCTGAAACCCATTCACACACACACACACAAGCACACGCAGTTGAGAGAAGAAGAAGAATGG GGGAAGGGAGAGAAGGAGATTGGGAGTGCAGCAGTTGCAACAACCGCAACTACGCTTTCAGATCATTCTGCAATCGATGC AAGCAACCCCGTCTCCTCGTTGATACCAAAACCCCTGCTGATTCCAAGTGGCTCCCTCGTATTGGTGATTGGATCTGCAC CGGTTGCACTAACAACAATTATGCATCAAGAGAGAAGTGCAAGAAGTGTGGACAACCAAAGGAGGTAGCAGCCATGCCAG CAGTTGCAATGACCGGAGCATCTTTCCCCCCTTATCCGCATTATGTTTCCAGGGCTCCAGGAGGACCAGCACAAAAGATG AACATTGGATTCAATGGATTGATCGGAAATGGTGTGCTACCGCAGCCACTGCATTTAAACTCCAATTGGCCTGTTACCGG AGCAGATAAGTATGGTGTCCATCCAGTTTCCATGTGGCTACCTGGTGGAAATTATAGTTCTGGACATCCTTATGTAAACC CCTCCAGCCAGGACCTATCTATTGCGAAAGGATGGCGCAATGGGGACTGGATCTGTAACTGTGGTTTCCATAACTACTCA TCACGCTCACAGTGTAAAAAGTGTGATGCTTTTCCACCTGCACTTGGGACAAAACGATTAGCTTCTGAAGAATTGGTTTA TGACTGGGACAACAAGAGATTGAATGTAGGAACTACAAATGATCGGCAGCACACATTTACAAGTTTAGAGCAAGCAGTGG GGAACAGCGCAGATCCTAAACCTGGAGTATTCCCTTCTTATCCCGGTATAAACTCAAGTACCGCTCCAAGTTTGCCAATG CCCCAATTGCTTCCACCTCAAGTTTCTACTCCAGCACTCCTTGGAAAAGGAGCGAAGCAATGGCGTAGTGGAGACTGGAT GTGCACAAATTGCAACAATCATAATTATGCTTCCAGACTACACTGTAACAGGTGTAAAACCCAACGAGTGGCCCCCATGC AACCCGTCAATGTTGTGTAA
Protein sequence (LotjaGi4g1v0127400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNIISVFSSSFSPPLFSKTKTQSLSHSLVTVDSETHSHTHTQAHAVERRRRMGEGREGDWECSSCNNRNYAFRSFCNRC KQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREKCKKCGQPKEVAAMPAVAMTGASFPPYPHYVSRAPGGPAQKM NIGFNGLIGNGVLPQPLHLNSNWPVTGADKYGVHPVSMWLPGGNYSSGHPYVNPSSQDLSIAKGWRNGDWICNCGFHNYS SRSQCKKCDAFPPALGTKRLASEELVYDWDNKRLNVGTTNDRQHTFTSLEQAVGNSADPKPGVFPSYPGINSSTAPSLPM PQLLPPQVSTPALLGKGAKQWRSGDWMCTNCNNHNYASRLHCNRCKTQRVAPMQPVNVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| MobiDBLite | 30 | 60 | 31 | - | – | |
| MobiDBLite | 38 | 59 | 22 | - | – | |
| Gene3D | 48 | 86 | 39 | 3.3E-10 | – | |
| PANTHER | 53 | 379 | 327 | 1.2E-130 | – | |
| PANTHER | 53 | 379 | 327 | 1.2E-130 | – | |
| SUPERFAMILY | 56 | 85 | 30 | 6.44E-9 | ||
| Pfam | 57 | 84 | 28 | 8.7E-8 | ||
| ProSiteProfiles | 57 | 86 | 30 | 10.331 | ||
| SMART | 59 | 83 | 25 | 7.5E-7 | ||
| ProSitePatterns | 61 | 80 | 20 | - | ||
| Gene3D | 93 | 131 | 39 | 1.2E-10 | – | |
| SUPERFAMILY | 94 | 128 | 35 | 3.22E-8 | ||
| ProSiteProfiles | 100 | 129 | 30 | 10.116 | ||
| Pfam | 100 | 128 | 29 | 3.4E-7 | ||
| SMART | 102 | 126 | 25 | 2.1E-8 | ||
| ProSitePatterns | 104 | 123 | 20 | - | ||
| Gene3D | 220 | 255 | 36 | 8.9E-10 | – | |
| SUPERFAMILY | 224 | 251 | 28 | 6.28E-7 | ||
| SMART | 228 | 251 | 24 | 3.6E-4 | ||
| Gene3D | 335 | 373 | 39 | 1.9E-11 | – | |
| SUPERFAMILY | 336 | 371 | 36 | 2.33E-10 | ||
| ProSiteProfiles | 342 | 371 | 30 | 10.06 | ||
| Pfam | 342 | 368 | 27 | 5.8E-8 | ||
| SMART | 344 | 368 | 25 | 1.3E-6 | ||
| ProSitePatterns | 346 | 365 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0127400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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