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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0129200 |
| Transcript ID | LotjaGi4g1v0129200.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-adenosyl-L-methionine-dependent methyltransferase superfamily protein; TAIR: AT5G66180.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|A1JRZ3|RSMB_YERE8 Ribosomal RNA small subunit methyltransferase B; TrEMBL-Plants: tr|A0A0B2NYA6|A0A0B2NYA6_GLYSO Putative methyltransferase NSUN5; Found in the gene: LotjaGi4g1v0129200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:18841640..18846359) extracted from Lotus japonicus Gifu genome v1.2.
TTGTCTTTTTTTTTTGAACGTTATTATTTTGTCAATAATCTACATTCCCACTTAAGTTTGCAATGCATCAGTTTGCCACC AGCCCACCACTCTTAAACGACAGGGTTTCGTACGAACCCCGCCGTCGTTTACTGCCTCCTCCCCTCCCTCCGTGAACTGC AACAAATCTGCCACCGCGAAGCCAATCGTCTCATGGAACACGCCGCAAAGGCGCCATTACCAGAAGCTTTCCTTCACTTC CTGGAGGCCAATGGGCTCGACCCATCCATCTACACCGCCGTCGATTCCACCCCACGATACATTCGGTAATTCCAATTTTC ACTTCTTCTTCATCGTCTTCCAATTGGTACTGTTTTTTTTCTTTCTAATTTTAATTCTGGAGATGAAATTAATAGGTTGA AACCCGGTTGCGAAGCTTGTCTTGAAGAGGTTGAAGCAGAGGTGAAATGCAAGCTCGAGAAATTGGAATGGTTGCCAGGG TTTTACTCTCTTCCTCCTCATGTTCACATTGCTGGCTCTAAGCCTTACAAAGAAGGGAAGGTAATTTAGTAGTTTGGTTG CCCAAAATATTAATTAACCAAGCAATGTTTCAATGAATTGTGAGGAATGATGTATTAAACTTGATAAAATGTGAATTCAA TTGATAATTGTATATAATTACACTATTTATACAGTGAATAACTCAACCTTAGAGTCTAACTAACTCAACCAATTGCTAAC AACCCCTAACTGAATTCTAACTACCCTTAACTGAATCCTAACCAAATGCTAACTACTTATTATGCTCAATATGATGAATG TCATTTTTCTGATTTATTTGTATCAGATATATGGAATTGATGCATCTTCAGGAGCTGCTGTTATGGCTTTAGATATATCA CCTGGGGATCATGTCCTGGACCTATGTGCTGCTCCTGGTAGATATTTCTCTGCTCAATTGTGTTTCTATTCTCTGTTTAT TTATAAATTGTAACTGATGTTCAAAAAATTAAATCTTTTTGAGATTAATATTGATTTATATCAGATAGAATGCGTTTAAA ATTGTGAATTCCGGAATTCAAATGATGATTTTACATTTAGGTTTTTATTTTAATTAATTGTTTAGGGATGTTTGTTTTAG TTGAGAGAGGAGTAATATCAAATAGTGGCTATAGCATAGCAGATTTTTGGCTAATCGCGACGTCGCTATTGCCCACTATA GTGCGCTATTCCAGCTATTCGCCGCTAAATAGTGGCCAAAATAGCGGATTTTTGGCTCACCGCGATGGTCCGTGATCGCG ATTTGAAAACACTGAGCAAACTATATAGTTTCTCAATTGGCTGGAGTCATGATTGTAATGGTTTGTCTGAAAATTAATTT TCAGGTGCTAAACTTTGTATGATACTAGACCTTCTTGGTGATTCTGGCTCTGTTACGGGAGTTGATGCTGCGAGGCATCG ATTGGCAGCATGTAGAACAATGCTGCAGAAATATAAACTGGGTGATCGATGCCGGCTTTTTGTTGCTGATGGAACAGCAT TTTCAGTTATTCCTCAGGGGTTTTGTTCGGATTCTAAATCATGTAATTGAAGTTTAAGTTGTGCAGTACTCATATTTGAT ATCATATTTATTAATCTTCATTACCTGTTTTGAAATACTTTCATTCTGTCAAGTATGAAACAGGCGAGTCTGGATTGGAA GAGAGAATGGATGTGTTCAAGGAGTGGACATCTAGGAGACCATGGAAAGAGAGAAAAAGAGCAAATCAAAGTGGGACTCC ACAGTTGGTGTCTAGGTCTCAGCCTCCTGAACTCATATATTATGGACAACATTCTGGAGTTATTGGTCTTACTAAAGGAG AATTATATAAGACTGTATCTGACAATGAGATTGCAAGCCATGGCTATGACAAAGTAACTAGTACCTTCCTTTTGAATATA TCTTGCATCGTTCTTTGCTTACTTTTACCGTGAAAAGTTTATCATTTGGATTTGGTGCAGGTCCTTGTGGATGCTGAATG CACTCATGACGGTTCAGTTAAACATATACAAAAGTTTGAACATTGGGGCTGGTTAACACTTCAACGCCGTTTGCTGGATG CTGAGAGGACTGATAATTTACATGCTCTTCAGGCAAATAACTAGTGTCTCATTATTCTCTTTGATCCATAAATACACATT TTCTACCTGTTGGAACATTTAACTGGAACTATTATCTTCATTTCTTCCCTGTCTTACACACTCTTATTCTGACACAAAGC TCCAACTGAGAAGAAATAGAAAAGGTTGGTAATTAATGAGATAGTACAGGGTTATTGTGTTGTTGTCAAACACTAAACAG TATATGCATTTTCCTGTTGGATAGCTTCTAAGGGGTAATCACTTATCAATGGTGAACTGACTACTGAGGCAACCTTGGAC TTCAAATGAAGTGCATTGCCTAAAACATGTTTGAAAATCTATGTGCTTAAGTGATTAAGCATGATGCAAGTTTATATAAC TAATTGGATGAAGATATGTCTGAGTGGGTAAGTTGCTGAAACAAGCCCACCCGCTGCAGCATTACGTCTAAACCTCGTCA AAAGAAAAATAGTGAATTTGAGATTGCCAGCAATATCACTAACTGAATATGAGTGTAAACTTCATTTTAAAGCTACTGCT TTTGGTTGTGGTATTGCTACCCAAAAAGCATTTATGGGCTGGAGTGCTGGACTAAACAAATATCAGTCCATCAAAACATT ATAGTAATGCGAATGTATGGATTTTAAGTTGATAGTTTCTACTTGCCAGTATGACAACTATCTTCAATTGGTATATTATT TTGAGTTTCTGTTTCATAGTTATTATATGTGCACCATTTATTCCAAAAAGAAAAATTAAACATGAAATTTTTGAACACCG TATTGGAAATTATTCCTATTACCATTTTCGGCTTAGTTCTTGCATCCCAGTCGTCTTAAATATTACTTTGTTTTACCTTG TGTCTCACTACAGCTGAATCTTCTCACCAACGGTTTCAGACTTCTAAAAGTTGGGGGGTCACTCGTATATAGCACTTGCA GGTTCCTTTTACTTTGCAACTTGGCCTTTTTAAATGCAGTCAAATAACATGTGTACCAAGACACTATCGTTTATATCATG TGATTTTATTCTGACAAATATGTTATTGTTGATTAGCTTAACTGTTGCTCAAAATGAAGATGTGGTGGAGCAGTTCTTGA AGGAAAATGTGACTGCTGGTATGATCGTCATGCTTCATATTCAATTTCTTTTCAGTTGGAAAATTGTCTGAAATGTCAAC TATTTCTATTGTCCATGTTTAGTATTATTTGTTATCTATTTCAGCAATGCGATTAGCAGATTTACTGTGCTTGTTTCTTG TCAAATGCTATGTGCTTATCTTGTAGAAAACCCCCATTCTTGGATGCATGATCCCTCTATCCTCAAACCCTTTAACCCTC TTTCCCCCAACCCTCTTTAACTCTTTTGTTGATGGAAAAAAGTTCTGGTTGAATAAGAAATTGTCGGAGATTACAAGATC CTCAATTTAACTAGTTGACCTTTCATGTTCAGTATTACTCTTCTTTTTTCTTTTTTCATTTTCATTTTCATTCTTCTGGT GAACTCCGTTAACTTATGAAATGTAATGATATAGGATAGTTACATGTCGAAATCGTTTACATTAATTTGCATAATGAGCT GAGTAGGCATAGTTTTTAGTAATAATTCTTGATCACATACATGTTCTGCATTTGAGTTACATGCATGTGCTTGAGGTGTT TGAACGTTCCTCTTATGTTTTTGAAACTCATTTTTCAATCTACAGAGTTGATGGAGATAGATGTTGCTAGAAATTGGCCT TGCAAAGGTGGTCGCATACCAAAAACATGGCGATTTGACTCCTTAACATCACAAACCAGTGGACTCTTTGTGGCGAAGTT CACAAAAGTTGTCATATGATCTTTTTTTACTTCCTCGGAGAAAATAGGGTATGTTTGGTTACCCATTTCATTTTTCATCA AATGTGTTTAGAGATCACAAAGATTGTCATTACCAAATGAAAATGTATTTTTTCACAACTATTCTACTTCCACCTTTAGA GAGAGATAGAAATAGTAGAGAGAAGTGAGAGATATGATGTGTCATCCTTAGTTATGTTCTTTGTAAAGTTCGTTTGACTT CTTATGAATGAATTGTCCAGCACTAAGAACCGATAGTCATTTTTTTTAAAGAGAAATATATTAGATAAAAGGAGGTCTTG AAAACAAGCTTTCTCAAAGTAAGCTAACATGAAGAAAAACAACATAGGAAAACAGAACAAAAACAGCAACAGTAAAAAAA AAACGAAAGAGAAAAGAAGCATAAAGCTCTCTCCCCTCGCACTTCCATGTCCCAAGACAACAAGGAAAACAACCACCAGA AGCTAAGGCCATCCATCGAAAGCAAGGTACCAGACGAATAAGCAAGAGCCCTGCAAATAGAGGAGACAATCTGCACCACG TAGAAAAGGAGAGGACAGGCCAACCGAGAAGAAAAACTCTAGAAGGGTAAACAAAACAGTTCCAGCCAACAGCACTAGCA GACACAGGCGGCGAGAAAAAACAATAACAACACATCATAGGTCACAAAATAATGTTGTCATCTCAGCACCAGCTCAACAG AACCCATCACATACCATGAGACCAACTAGCGCAGCACAATCGAAACAGCAGGAAAGGCTTACAAGGGGCCTGCAAAGCAC
CDS sequence (LotjaGi4g1v0129200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACACGCCGCAAAGGCGCCATTACCAGAAGCTTTCCTTCACTTCCTGGAGGCCAATGGGCTCGACCCATCCATCTA CACCGCCGTCGATTCCACCCCACGATACATTCGGTTGAAACCCGGTTGCGAAGCTTGTCTTGAAGAGGTTGAAGCAGAGG TGAAATGCAAGCTCGAGAAATTGGAATGGTTGCCAGGGTTTTACTCTCTTCCTCCTCATGTTCACATTGCTGGCTCTAAG CCTTACAAAGAAGGGAAGATATATGGAATTGATGCATCTTCAGGAGCTGCTGTTATGGCTTTAGATATATCACCTGGGGA TCATGTCCTGGACCTATGTGCTGCTCCTGGTGCTAAACTTTGTATGATACTAGACCTTCTTGGTGATTCTGGCTCTGTTA CGGGAGTTGATGCTGCGAGGCATCGATTGGCAGCATGTAGAACAATGCTGCAGAAATATAAACTGGGTGATCGATGCCGG CTTTTTGTTGCTGATGGAACAGCATTTTCAGTTATTCCTCAGGGGTTTTGTTCGGATTCTAAATCATGCGAGTCTGGATT GGAAGAGAGAATGGATGTGTTCAAGGAGTGGACATCTAGGAGACCATGGAAAGAGAGAAAAAGAGCAAATCAAAGTGGGA CTCCACAGTTGGTGTCTAGGTCTCAGCCTCCTGAACTCATATATTATGGACAACATTCTGGAGTTATTGGTCTTACTAAA GGAGAATTATATAAGACTGTATCTGACAATGAGATTGCAAGCCATGGCTATGACAAAGTCCTTGTGGATGCTGAATGCAC TCATGACGGTTCAGTTAAACATATACAAAAGTTTGAACATTGGGGCTGGTTAACACTTCAACGCCGTTTGCTGGATGCTG AGAGGACTGATAATTTACATGCTCTTCAGGCAAATAACTAG
Protein sequence (LotjaGi4g1v0129200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEHAAKAPLPEAFLHFLEANGLDPSIYTAVDSTPRYIRLKPGCEACLEEVEAEVKCKLEKLEWLPGFYSLPPHVHIAGSK PYKEGKIYGIDASSGAAVMALDISPGDHVLDLCAAPGAKLCMILDLLGDSGSVTGVDAARHRLAACRTMLQKYKLGDRCR LFVADGTAFSVIPQGFCSDSKSCESGLEERMDVFKEWTSRRPWKERKRANQSGTPQLVSRSQPPELIYYGQHSGVIGLTK GELYKTVSDNEIASHGYDKVLVDAECTHDGSVKHIQKFEHWGWLTLQRRLLDAERTDNLHALQANN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 306 | 306 | 9.708 | ||
| PANTHER | 4 | 304 | 301 | 6.0E-83 | – | |
| PANTHER | 4 | 304 | 301 | 6.0E-83 | – | |
| PRINTS | 9 | 27 | 19 | 1.1E-27 | ||
| SUPERFAMILY | 31 | 293 | 263 | 6.01E-27 | ||
| Pfam | 98 | 169 | 72 | 2.1E-9 | ||
| CDD | 109 | 173 | 65 | 4.27748E-4 | – | |
| PRINTS | 135 | 152 | 18 | 1.1E-27 | ||
| PRINTS | 278 | 297 | 20 | 1.1E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi4g1v0129200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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