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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0129200 |
| Transcript ID | LotjaGi4g1v0129200.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-adenosyl-L-methionine-dependent methyltransferase superfamily protein; TAIR: AT5G66180.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q96P11|NSUN5_HUMAN Probable 28S rRNA (cytosine-C(5))-methyltransferase; TrEMBL-Plants: tr|I1JCG2|I1JCG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0129200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:18842421..18846170) extracted from Lotus japonicus Gifu genome v1.2.
CTCATGGAACACGCCGCAAAGGCGCCATTACCAGAAGCTTTCCTTCACTTCCTGGAGGCCAATGGGCTCGACCCATCCAT CTACACCGCCGTCGATTCCACCCCACGATACATTCGGTAATTCCAATTTTCACTTCTTCTTCATCGTCTTCCAATTGGTA CTGTTTTTTTTCTTTCTAATTTTAATTCTGGAGATGAAATTAATAGGTTGAAACCCGGTTGCGAAGCTTGTCTTGAAGAG GTTGAAGCAGAGGTGAAATGCAAGCTCGAGAAATTGGAATGGTTGCCAGGGTTTTACTCTCTTCCTCCTCATGTTCACAT TGCTGGCTCTAAGCCTTACAAAGAAGGGAAGGTAATTTAGTAGTTTGGTTGCCCAAAATATTAATTAACCAAGCAATGTT TCAATGAATTGTGAGGAATGATGTATTAAACTTGATAAAATGTGAATTCAATTGATAATTGTATATAATTACACTATTTA TACAGTGAATAACTCAACCTTAGAGTCTAACTAACTCAACCAATTGCTAACAACCCCTAACTGAATTCTAACTACCCTTA ACTGAATCCTAACCAAATGCTAACTACTTATTATGCTCAATATGATGAATGTCATTTTTCTGATTTATTTGTATCAGATA TATGGAATTGATGCATCTTCAGGAGCTGCTGTTATGGCTTTAGATATATCACCTGGGGATCATGTCCTGGACCTATGTGC TGCTCCTGGTAGATATTTCTCTGCTCAATTGTGTTTCTATTCTCTGTTTATTTATAAATTGTAACTGATGTTCAAAAAAT TAAATCTTTTTGAGATTAATATTGATTTATATCAGATAGAATGCGTTTAAAATTGTGAATTCCGGAATTCAAATGATGAT TTTACATTTAGGTTTTTATTTTAATTAATTGTTTAGGGATGTTTGTTTTAGTTGAGAGAGGAGTAATATCAAATAGTGGC TATAGCATAGCAGATTTTTGGCTAATCGCGACGTCGCTATTGCCCACTATAGTGCGCTATTCCAGCTATTCGCCGCTAAA TAGTGGCCAAAATAGCGGATTTTTGGCTCACCGCGATGGTCCGTGATCGCGATTTGAAAACACTGAGCAAACTATATAGT TTCTCAATTGGCTGGAGTCATGATTGTAATGGTTTGTCTGAAAATTAATTTTCAGGTGCTAAACTTTGTATGATACTAGA CCTTCTTGGTGATTCTGGCTCTGTTACGGGAGTTGATGCTGCGAGGCATCGATTGGCAGCATGTAGAACAATGCTGCAGA AATATAAACTGGGTGATCGATGCCGGCTTTTTGTTGCTGATGGAACAGCATTTTCAGTTATTCCTCAGGGGTTTTGTTCG GATTCTAAATCATGTAATTGAAGTTTAAGTTGTGCAGTACTCATATTTGATATCATATTTATTAATCTTCATTACCTGTT TTGAAATACTTTCATTCTGTCAAGTATGAAACAGGCGAGTCTGGATTGGAAGAGAGAATGGATGTGTTCAAGGAGTGGAC ATCTAGGAGACCATGGAAAGAGAGAAAAAGAGCAAATCAAAGTGGGACTCCACAGTTGGTGTCTAGGTCTCAGCCTCCTG AACTCATATATTATGGACAACATTCTGGAGTTATTGGTCTTACTAAAGGAGAATTATATAAGACTGTATCTGACAATGAG ATTGCAAGCCATGGCTATGACAAAGTAACTAGTACCTTCCTTTTGAATATATCTTGCATCGTTCTTTGCTTACTTTTACC GTGAAAAGTTTATCATTTGGATTTGGTGCAGGTCCTTGTGGATGCTGAATGCACTCATGACGGTTCAGTTAAACATATAC AAAAGTTTGAACATTGGGGCTGGTTAACACTTCAACGCCGTTTGCTGGATGCTGAGAGGACTGATAATTTACATGCTCTT CAGGCAAATAACTAGTGTCTCATTATTCTCTTTGATCCATAAATACACATTTTCTACCTGTTGGAACATTTAACTGGAAC TATTATCTTCATTTCTTCCCTGTCTTACACACTCTTATTCTGACACAAAGCTCCAACTGAGAAGAAATAGAAAAGGTTGG TAATTAATGAGATAGTACAGGGTTATTGTGTTGTTGTCAAACACTAAACAGTATATGCATTTTCCTGTTGGATAGCTTCT AAGGGGTAATCACTTATCAATGGTGAACTGACTACTGAGGCAACCTTGGACTTCAAATGAAGTGCATTGCCTAAAACATG TTTGAAAATCTATGTGCTTAAGTGATTAAGCATGATGCAAGTTTATATAACTAATTGGATGAAGATATGTCTGAGTGGGT AAGTTGCTGAAACAAGCCCACCCGCTGCAGCATTACGTCTAAACCTCGTCAAAAGAAAAATAGTGAATTTGAGATTGCCA GCAATATCACTAACTGAATATGAGTGTAAACTTCATTTTAAAGCTACTGCTTTTGGTTGTGGTATTGCTACCCAAAAAGC ATTTATGGGCTGGAGTGCTGGACTAAACAAATATCAGTCCATCAAAACATTATAGTAATGCGAATGTATGGATTTTAAGT TGATAGTTTCTACTTGCCAGTATGACAACTATCTTCAATTGGTATATTATTTTGAGTTTCTGTTTCATAGTTATTATATG TGCACCATTTATTCCAAAAAGAAAAATTAAACATGAAATTTTTGAACACCGTATTGGAAATTATTCCTATTACCATTTTC GGCTTAGTTCTTGCATCCCAGTCGTCTTAAATATTACTTTGTTTTACCTTGTGTCTCACTACAGCTGAATCTTCTCACCA ACGGTTTCAGACTTCTAAAAGTTGGGGGGTCACTCGTATATAGCACTTGCAGGTTCCTTTTACTTTGCAACTTGGCCTTT TTAAATGCAGTCAAATAACATGTGTACCAAGACACTATCGTTTATATCATGTGATTTTATTCTGACAAATATGTTATTGT TGATTAGCTTAACTGTTGCTCAAAATGAAGATGTGGTGGAGCAGTTCTTGAAGGAAAATGTGACTGCTGGTATGATCGTC ATGCTTCATATTCAATTTCTTTTCAGTTGGAAAATTGTCTGAAATGTCAACTATTTCTATTGTCCATGTTTAGTATTATT TGTTATCTATTTCAGCAATGCGATTAGCAGATTTACTGTGCTTGTTTCTTGTCAAATGCTATGTGCTTATCTTGTAGAAA ACCCCCATTCTTGGATGCATGATCCCTCTATCCTCAAACCCTTTAACCCTCTTTCCCCCAACCCTCTTTAACTCTTTTGT TGATGGAAAAAAGTTCTGGTTGAATAAGAAATTGTCGGAGATTACAAGATCCTCAATTTAACTAGTTGACCTTTCATGTT CAGTATTACTCTTCTTTTTTCTTTTTTCATTTTCATTTTCATTCTTCTGGTGAACTCCGTTAACTTATGAAATGTAATGA TATAGGATAGTTACATGTCGAAATCGTTTACATTAATTTGCATAATGAGCTGAGTAGGCATAGTTTTTAGTAATAATTCT TGATCACATACATGTTCTGCATTTGAGTTACATGCATGTGCTTGAGGTGTTTGAACGTTCCTCTTATGTTTTTGAAACTC ATTTTTCAATCTACAGAGTTGATGGAGATAGATGTTGCTAGAAATTGGCCTTGCAAAGGTGGTCGCATACCAAAAACATG GCGATTTGACTCCTTAACATCACAAACCAGTGGACTCTTTGTGGCGAAGTTCACAAAAGTTGTCATATGA
CDS sequence (LotjaGi4g1v0129200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACACGCCGCAAAGGCGCCATTACCAGAAGCTTTCCTTCACTTCCTGGAGGCCAATGGGCTCGACCCATCCATCTA CACCGCCGTCGATTCCACCCCACGATACATTCGGTTGAAACCCGGTTGCGAAGCTTGTCTTGAAGAGGTTGAAGCAGAGG TGAAATGCAAGCTCGAGAAATTGGAATGGTTGCCAGGGTTTTACTCTCTTCCTCCTCATGTTCACATTGCTGGCTCTAAG CCTTACAAAGAAGGGAAGATATATGGAATTGATGCATCTTCAGGAGCTGCTGTTATGGCTTTAGATATATCACCTGGGGA TCATGTCCTGGACCTATGTGCTGCTCCTGGTGCTAAACTTTGTATGATACTAGACCTTCTTGGTGATTCTGGCTCTGTTA CGGGAGTTGATGCTGCGAGGCATCGATTGGCAGCATGTAGAACAATGCTGCAGAAATATAAACTGGGTGATCGATGCCGG CTTTTTGTTGCTGATGGAACAGCATTTTCAGTTATTCCTCAGGGGTTTTGTTCGGATTCTAAATCATGCGAGTCTGGATT GGAAGAGAGAATGGATGTGTTCAAGGAGTGGACATCTAGGAGACCATGGAAAGAGAGAAAAAGAGCAAATCAAAGTGGGA CTCCACAGTTGGTGTCTAGGTCTCAGCCTCCTGAACTCATATATTATGGACAACATTCTGGAGTTATTGGTCTTACTAAA GGAGAATTATATAAGACTGTATCTGACAATGAGATTGCAAGCCATGGCTATGACAAAGTCCTTGTGGATGCTGAATGCAC TCATGACGGTTCAGTTAAACATATACAAAAGTTTGAACATTGGGGCTGGTTAACACTTCAACGCCGTTTCTGA
Protein sequence (LotjaGi4g1v0129200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEHAAKAPLPEAFLHFLEANGLDPSIYTAVDSTPRYIRLKPGCEACLEEVEAEVKCKLEKLEWLPGFYSLPPHVHIAGSK PYKEGKIYGIDASSGAAVMALDISPGDHVLDLCAAPGAKLCMILDLLGDSGSVTGVDAARHRLAACRTMLQKYKLGDRCR LFVADGTAFSVIPQGFCSDSKSCESGLEERMDVFKEWTSRRPWKERKRANQSGTPQLVSRSQPPELIYYGQHSGVIGLTK GELYKTVSDNEIASHGYDKVLVDAECTHDGSVKHIQKFEHWGWLTLQRRF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 290 | 290 | 8.842 | ||
| PANTHER | 4 | 283 | 280 | 1.6E-78 | – | |
| PANTHER | 4 | 283 | 280 | 1.6E-78 | – | |
| PRINTS | 9 | 27 | 19 | 3.8E-23 | ||
| SUPERFAMILY | 30 | 282 | 253 | 3.46E-26 | ||
| Pfam | 98 | 169 | 72 | 1.9E-9 | ||
| CDD | 109 | 173 | 65 | 4.24861E-4 | – | |
| PRINTS | 135 | 152 | 18 | 3.8E-23 | ||
| PRINTS | 278 | 290 | 13 | 3.8E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi4g1v0129200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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