Transcript — View — Lotus Base

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LotjaGi4g1v0130800.1

Overview

Field	Value
Gene ID	LotjaGi4g1v0130800
Transcript ID	LotjaGi4g1v0130800.1
Lotus japonicus genome version	Gifu v1.2
Description	F-box protein family; TAIR: AT4G35930.3 F-box family protein; Swiss-Prot: sp\|Q5XF11\|FB248_ARATH F-box protein At4g35930; TrEMBL-Plants: tr\|A0A151R7H0\|A0A151R7H0_CAJCA F-box protein family; Found in the gene: LotjaGi4g1v0130800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:19140622..19143596) extracted from Lotus japonicus Gifu genome v1.2.

CCGTCTCACGAGGCCCGGTGATATGTAATCAATCAATAACCGGTGGGTCCAACACCGCATCGGATACCAAAACCACCCAA TCACACTCCGCCACGTCACCATCGACTGAACTCAATGACTTCTTTTTCGTGCACCCAAAACTGTTCATGAAAATTTGGCG GGCAAATAAGCAAAATTCAAATTAGCTCCAATAAAACCCTAGCTACCCCCATTCACCTTCTTTCCCTCTCTATCCTCTCT CTCTCTTCTTTCTCTCTCTACCTCTTCTTCCTCGTGATGTAACTGATTCTTGCTTTGAATCTCAATCTCCAATCAATGTA AGTTTCCTTCAATTTTTTTCCTTATTATATAGAGTTTCATTTCAATTTGGATTTGAAACGGAGTTTGTTTGTTTCAGAGT TTTCGATGGGGAAGGTTTCACCGAAGGAGAAGAGTTGGAAGGGGAAGAAAGGGAGGAAGCAATTGCGAAGCTCCAAGAAT AAGTATCTCAAGCCTGGGACTCTCGCTCAGCTTCGGTGTAACAGATCTTCAGGTTCGGGTGGCGGTAAGGCTTGCACCGA TCTCGGGAAGAAGAGAGTGGCGGTTGGTTTGAATTCGAGGGAGACGGTGGAGAAGAGTCCTGTGATGCTGTCGCCGGTGA ATTTGGTTAGGCAGAATAGTTTGCTTGGGACTCCCAAAACGCCGAGAATCGAAGAGCCTCAATCGGATTCCAGGCTTGAA TCGCTACCTATGGATGTCTTGGTATGCTTGATCTTCCCAATTTTACATTCTAGAGTTGCAATTTTATTTATTGGTAATGA TTATTGGTATTTGGAAATTAAATTGGATTCTGATTAATCTGAATTGAGCTGGATCACTCATTAAAGCAGATAGTATTTCC TATTCATAAGACCTAGATTGATGCAAATTTTAACTGTGCCTAATGCAGTTATCATGTAATGACTCACAATTCCTTAAATT TGTGTATTTGTTATGTGATGGTGTCAAATATGTTAATTAGTGATTGAGATTCTCTGCGGTTGTTATTTTTCGTCATAGTT GTTGCTTATTTGCATTTTGGCTGCCATGATTTTGAAGATTATGACTTGATATGTTTGAGTTCCTATTTGTTTACCTTGCT TGGACTTGGGTGTCAAAACCCAAAATATAAATTTGTTTTATGATGTCAAGGAGTACTTAGTGCTGTGTCATATGTTTGTT ATTTTGCATACAGACTCTATTGTTGTTTTTAGTCCTTTTGTGATGCTTCTGATTTACTGTTGAATTTTATGTTTTGCTGG AATTTAGTGTATCTGTGGACTGTGGGTGTCAGTGATTTGTTCTGAAACTTTTGAATGTAGAAGCATGAATCGATGCAATG ATAAAGCACATAAGGAAGTAGTACTAGTTTGTTTGTTGTGTGATACTTCCTCTATCTATGTATTCAAAACGATGTAGATG CCCCTGCATTAATTCAATGAGATTGGTGAAGGATGGGCCTGTTTCATCTTGCTTGTTTGCTGATTGAGTGATGCTCTAAG CATGTTATTTTCTGTTCGGTGTCACTGAACGAGTTATTTTATAGCGGTAATCTTTCTAATTCATTGTGAAGCATCAAAAG AAGTTAATCTAGCTTGAATTTTCTAGTGAAGTTGTTAAGCACTGTGCAACTACAATATACAGAACAATTTCTTCATATTT GCTTTGTACTTTGTTCAATTGATTGGCTATATGTTTCTGAATAGGCTCTTATATGTTTGAACTATTTCTGTTGTATTGAA TATTGACCCCATTTTCTTTCATTAATTTGAGGTTAAACTGCTATGCCACCTGCACCATGACCAGCTGAAGGCTGTCTTCC ATGTTTCACGAAGAATTAGAAAAGCAGTGAGTAGTTCTGACTCTGCTGTTTATATGCCTGCAAATTTTGTGATTATTTGT AGTGGTTTGTTACTTGTATAATAGCTAACGCTTCCAAATGTTGTCAGGTTATTGTGGCAAGGCAATTTCACTTCAATTAT ACTACCCCAGATCGCTCTCGGCAAGAGCTGTTAAGTACAATGACTCCCAGGCCTAATGATCATTGGCCTTTCCTGTGGTA GGTGCTTCTAACCTGTTTTTTCCTGCAACTTCTATAGTGTATGTTTGAAAATCTCTATGGATCATAAACCCAAAATTAAT TCTGGGAAGAAGCTTCTCGGAGTCAGAATTGATTCTTAGAAAAGAGAAGTTGACACAAAATGCTAATTAGTGCTATTAAT TTTTTTTTCAGCAAGGGTGATGGGAAGGGAGTGAGGGTTCCAAGCCCACACACTCCTAAGGCACCTAGACATGGCCCTCG ACCTCCTTCGCGCCTTAAGGTTTCAGAGATGCGGCAGGTTGCAGCGGTTCTTTTCCAGGAGTCAGCTTTCCCTCCTCGTT GCTTGGTGCCGTCAGTCATACCTAAGCCCCTATGCAAGTCCTTGGCTTCTACCAGAGTTCTCTTCTATGAAGATGAACTA TGCCAAGCAGTTGCTCAGAATAAACTTAAGTGATCCTGTTTGGTTTTTTTTCTTCTACACTGCCTCGGTGTTTCTTTACT TTGTATAGTTGTTTTTTTATATCGCTAGTGAATGTTAGAATAGTAAAGATGCAATTTTGTAGTCTCTTGGGGCAGTTTAG CTGGTGTGGATATTTCAGATGTCTAAGTAGACGTGGAGGGTTGGCGAAGGTTGTGGTAATAATATAATTACAGTCATTAC TTGTATATGTTTGGTGTGTTTGAACTTTGAAACAATTTCGAGTTGCTTCTAGAAAAAAAATTGAAGGATCTTCCTTCGAG GGTTTTCATGGAACTTTCTAAGGGTGAAGTTACTTCTACTGTTAGCTACACTGTTACGTTTGAGATTGATCAGGTCGTTG CATCGTACACATGTATATTATGATGCTAACTGTGTGTTTGAGTTAAGTGTGTTAACATTTGTACCTACCACTCAACCACG AAGATGGCATTATGA

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0130800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGAAGGTTTCACCGAAGGAGAAGAGTTGGAAGGGGAAGAAAGGGAGGAAGCAATTGCGAAGCTCCAAGAATAAGTA TCTCAAGCCTGGGACTCTCGCTCAGCTTCGGTGTAACAGATCTTCAGGTTCGGGTGGCGGTAAGGCTTGCACCGATCTCG GGAAGAAGAGAGTGGCGGTTGGTTTGAATTCGAGGGAGACGGTGGAGAAGAGTCCTGTGATGCTGTCGCCGGTGAATTTG GTTAGGCAGAATAGTTTGCTTGGGACTCCCAAAACGCCGAGAATCGAAGAGCCTCAATCGGATTCCAGGCTTGAATCGCT ACCTATGGATGTCTTGGTTAAACTGCTATGCCACCTGCACCATGACCAGCTGAAGGCTGTCTTCCATGTTTCACGAAGAA TTAGAAAAGCAGTTATTGTGGCAAGGCAATTTCACTTCAATTATACTACCCCAGATCGCTCTCGGCAAGAGCTGTTAAGT ACAATGACTCCCAGGCCTAATGATCATTGGCCTTTCCTGTGCAAGGGTGATGGGAAGGGAGTGAGGGTTCCAAGCCCACA CACTCCTAAGGCACCTAGACATGGCCCTCGACCTCCTTCGCGCCTTAAGGTTTCAGAGATGCGGCAGGTTGCAGCGGTTC TTTTCCAGGAGTCAGCTTTCCCTCCTCGTTGCTTGGTGCCGTCAGTCATACCTAAGCCCCTATGCAAGTCCTTGGCTTCT ACCAGAGTTCTCTTCTATGAAGATGAACTATGCCAAGCAGTTGCTCAGAATAAACTTAAGTGA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0130800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGKVSPKEKSWKGKKGRKQLRSSKNKYLKPGTLAQLRCNRSSGSGGGKACTDLGKKRVAVGLNSRETVEKSPVMLSPVNL VRQNSLLGTPKTPRIEEPQSDSRLESLPMDVLVKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTPDRSRQELLS TMTPRPNDHWPFLCKGDGKGVRVPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQESAFPPRCLVPSVIPKPLCKSLAS TRVLFYEDELCQAVAQNKLK

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	49	49	-	–
PANTHER	PTHR34049 View details on PTHR34049 Search for proteins/transripts with this domain View external data on PTHR34049	1	260	260	3.5E-121	–
PANTHER	PTHR34049:SF2 View details on PTHR34049:SF2 Search for proteins/transripts with this domain View external data on PTHR34049:SF2	1	260	260	3.5E-121	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	10	24	15	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	25	46	22	-	–
SUPERFAMILY	SSF81383 View details on SSF81383 Search for proteins/transripts with this domain View external data on SSF81383	92	138	47	3.66E-5	IPR036047 Show description in modal box View details on IPR036047 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50181 View details on PS50181 Search for proteins/transripts with this domain View external data on PS50181	101	149	49	8.915	IPR001810 Show description in modal box View details on IPR001810 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	181	202	22	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0130800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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