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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0131800 |
| Transcript ID | LotjaGi4g1v0131800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Embryo defective 3006 protein, putative; TAIR: AT4G19350.1 embryo defective 3006; Swiss-Prot: sp|Q39HN2|RLME_BURL3 Ribosomal RNA large subunit methyltransferase E; TrEMBL-Plants: tr|K7MGX6|K7MGX6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0131800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19281723..19289675) extracted from Lotus japonicus Gifu genome v1.2.
GCATTTTTTTTCTCTGAATTATGAACTGTAACATCCCATTTTGAAAAACACACCCGTTCGAACTGTGGCTCCCCCCATCT GCTCCTTGCTCCCATCCGCGACCACCGTCCCGCGTGGCTCCGCCGTGGTTCCGGTAGACTTTCCCTTCCCCAATCGAAGT GTTCCGACCGAGCTTTCTCCGGCGACATTTCTCTCGACCGAGCTTCTTTGAAGTGAGTTGCTGTACTTACTTGCCTCTGA ATTCTGATTTCACTGAGAATACAACAGAACAGTGTGTTCTGGTTTGAATTTTTTTTATTCTTTTTTTATGATTTGTTTTT TCTTCACTCTCGTTAGTATGTTTTTGAAATTCCTGATAATTGGGCTTAATGTAGATACCATTAGGCCCCCAGTACTAAGT TACAACATCCAAATTCTACTAATTTTGTTGATCTTATTCTTAATGCATGTCAATTTGAGATGCTTATAATTTGAGCCTAT TCCCATCTCATTTATCTCTTATTTCCTAGCTCATATGACCATTCTGTATCATTAAGCATGCTCAATTATTGCTTTTTCCA ATTAGGTGGAAAATTTCATTGGTAAGAAACGTTTATTCAGCCATTAATAAAGAAAGACTTAAGAATTCGCGAGGAACTTG TTGCCGGTAATTGTTGCTAACATCTTTGCTTCAAACACTTGAACTGCATGTGATGAGCATGCCTCAGCTTCTCCTTCCAT TTTTTTTCCCTGTTATGTGTCTGATGATTATCTTTGTGGTCATTGATTTAGAAGCAATGGAGAAAAGGCCTGAACTTGGT GGCAATGCATCATCGTCTTCTTCAACTGGAATTGGTTCAAGGTTTTCCAATTTGAGCAAGTCCTTCAAGTTTGCTCTCCG TTCTTTGCTCACTTCATGCTCAAAGGAGGTACCCTTAGTTGCTTTTTCTTATCTCCCTTTGCGCAACTGTTTTTAGTTTG AGTAAATTAATTTTGAATAATGATCAATAGTATGAAAATTAACAAATAACATACGAATGCACATCATTGGTTCGTCTTTC CTATATTAAGGCAAATTGAATTTGTATTCTATTAAACTACAATTTATATGGATGAACATTGTTGTTCATGTAGGAATTCT CTCGTAAAATACATCATTTAAATCTGTTTTTTTCTGCCAATAATAAATAATGGTGAACTACGAAACTGGATGTCTCTGTC CACTCTAAGTTTTTAAGGTAATAAATAAATGCATACTTTGTTAACTAATACCTGTCAATGGAAATGCCAACAACTTATTT GTACTTCATGCTTGTATCCTCAAACCATTTACCCTTTTATTATTATTATTATACACTGACTGAGAAGGGAAGGTACTATT CATCCTAAGGGGAAAGGGGGATGTGGGAAGGATCAGGATCCATTGGTATTGTCTAGTGTTTACTTTTCATGCATTGGTAC CCTTTAGATTTGATGACAGTCATGTGAAACTATATCTAGTGTGACACACCTTCCTTATGTGACAGTCTCATAGTTATGGC TTAGAGAAGTTAATGACTTTAGGTTGTTGGCTTGTTGCTTTCATGATAAACTAGATGACATTGCCAATTATAAAGCCAGG CTAACGGAAACAATTGAAGATAAGAAGATAATGGAGTTTTGAGTACGTCATGTGGGATTTCTTGAATAATACCAGCTCAG TCATGTATTACAGATGACAACCTTGTAACTCTAGTCACAATTTTTTTGTATCATTCCTGCCATACTTTAACGATAACAAC GACAATCAAAGCCTTTTCCCACCAAGTAGAGTCAGCTACATGGATCAGATGATATCATAATGGCCTATTAAGAATCTTTT ATGATGCTAACCCATTCAAATTCAAATCCTTCTTAATTATTTGACCACTTGGCTTATAATTTTTTTGACCTTCTTCAATT TCTAAATATTAGACTGTCCTCTATTGGTCTATCCTTCTTAATAGTATTTCTTAAGGTCTTTTCTTCACATACCCAAACCA CCTAAAGCAAGATTCCACTATGTTTTCCACAATTGGTGTTACCAAACTTTCTCTCTTACACTTACATTCCTAATCTTGTC TTGTGTGGCCACTCCGTCATTGTAACATTGTCATTTCTGCAACAATGAACCAACTTTCTTGTTGGCTTTTGACCCCCTTG TACTTTGTAATTGTAGAAAATATCACCCAGATTTATGTTACTAGTTCATATCTGATGCCTTCTTACTAAAAGATAGCTAT GACATATTTACCCTGTGATAACAGCTTTACACGAAGTAGCGATTTTGTTATCTTTCACGGTTTCACCCACTTTGAGACAG CACACAGCATTATCTTTGAACTTTACTGCTCAACTACAAGTCTACAATTCTGTTATTATGTTAATATTCTGCATTTAACA AATAAACACATTCTCATTTTGATTCAACCTTCAAAATGGCTATATATTGATGAACGTTTCTGTTTTGACTTTTGATTTCT GAAGGAATTTTGTAAAGCATTTTCAAGTTTTACCAGCAATGAAAAAGAATTGCTCCATCGCCTATTTCTTCAGGTATGAT CTCTTGATATTAATTCTTTCACATTAGAAATTTAATTCTGAATGTTACGTTGAGTTTTAGCCAAAAAGAAAAAATTTAAT GACAATGAGTTTGACCTTGGTCGTCATATTTCACATCTTGTTTTCTAAAGCAATTATGTGTTTTAAAATCAGGGCTTAAA TCCCTTGGATCTCAATGGTTTTTATATTGAGATACTCAGATGGAATTTTTATTGGTAATTTGTGTCAATGTTAATCTAGG AAAATTATGGTGCCACTGCCACCTAGCTGTTAGGAATTATTTATTCGTTGTCTTGAACGGACTATCCCAAAAGTTTGAGT TGTTGGGTGAAGAGTGAACTGAAGACACATGGATAGTTTTATATTAGAATTCTAACGTGTCCACTCACGCAATAGTCCAT TGGGCTTGAAGCGTTCGCAACGTAGAGACCACCTACCTTATGTTGAAATTTTTTCTGTAGAATAATGGGGGAAAAGGATT GTACTCCACACCACTTACTTACCGAAGTTTTTACACCATCTTATAATCTGGGTTCGGCCTAACTCAACCCTAGAAACTAG CTCATAAAAGCTAGTTCATGAGTTGAGGATTGCGCAAACCTTTATAAGCTCTACTTTGCCCATATATCTAGTCGGTGTAT GATCTCAACACGTGCAAGGTGGAATTTATAGACACATTGGACATGAAGGTGGAATATCAGATCTAAGACTCTTATACCAT CTTAAAAGAAGGAAGAAAAATAATTTTATTCACTGATTTGGTAGTAATTACAGACAGTAATTTATAGACCCATTGTACTT GAATCCTAATTGATGATAATCAAGATAAAAAAGACTAAAATTTGTCCTATGAATTATTTGATGTTACAGCCGTATTTACA AGAGAATTAAATATGATGTTTGTCCTAAAATATGATATTTACACTAGGTAAGACAACATTATTTTCTGCAACTCCTCTAT GCTAAATAAGTTCAAAGAAGGAATTGACTATTGACTGATTTTCAACAGGATGTCATGTTAAAAAACCAAACTACTCTTTA CATGTGAGTTAAGTAAAATGAACAAAGCATAACTGTTATTACTAGCAACCACTTTTAGATACAAAATTTAAACTGTTGAA TACATATTTTGGTATCAAACAACTCTTTTAAGTTTTAATATATCACGGAAACCATGAATCAACTATCCACAAATTATGGT TAGGTGAAGGCATATGATTATATGAAAGGTTTTATACCCAATAGGCTAATACCCTCCCTCATGAAAAAGCCATTTGGGCT TAATGTGTTGAACGTATAACCACCTTGAGCTGAAATTCAACTTATTTTGAGAAATAAAGGCTGTAGTACCATCTTGAGAA TGATTTGTGAAGTGAGTCAGAGAGAATCCTCTCACAGCCCACACGAATTTTTATACAATACAATTTTACACAATCAAATC CCCTTATTATCAGGATTGATACACATATTTACAGCAAGGACTACTGTCCTAATTACAAAAGGAATTTGCAAATATTACTA CCAAATGAAGCTATATATACAATATGTTGTATAATGCCTTTTATCTCTGCTGAATGCATGTAAATTCCTTTCTTCTATAT TTCAAAGGCTAAGCTTTATTAGTTATCTAATTTTCTTCTCATGTCCCAAACCTTTCAGGTCATTACTTCTATGCATGAAA ACATTGAGGTATGTTTGTCGTAACTTCTTATGTAAGCAATGTCAGATATAGTCTTCATTCCATCTATAATATATATACTT AATGGGATGCCTCATACAAAAATTAAGGATGTTATCTATCACTTTGATCTTTTTTTCCTTTCAGTTATACCCATTTCTTA AGCTAAAAGCCTGATTCTGATACTTCACTATCTCAGATGCTTAGTACTGGCTTCTGCCTGCTATGGTTTATGAGCCAGTA AACTAACTTTGTGTCTATGTGTTTGTTTGTTAGCAATTAGCATATATTGAATACATGCAATTGAAGTTCATAAGATTATC TTCCCCTAATTCAGTTTATTTGCTTAGGAACTTTGGGGCCTGTTTTGGTGGACATTTGATATAGAGGAAGGTTTTTTGAA AGAAAAACTGTTTTGGTGGTTGTCTTCTGTCTAACTAAAACTAAAATTAAGACTGGAAACTATCCTGAATACTTAGCAAT GGTCGGGCTCTTGATTTCTTGTTACTGCAATTTTGTTCTTTCTTAATCTTCAGTCTCTTTCTCAAACACGCACAAACACT AATTTAGTTGCTTGTTTCCTGTAACTGTATTTGTGTGCACATTAAGAGCATTTTTGGACCTAAGAATTTATTATGATAAA TTTATAAATTCTTAATGCTCTGTCAGTTTTTTGCAGGATGAGTTTGAGAAAATCTGTCTTCACACACAGGTACATCTTAA CTATTGTCTCTGTTGTTTCATTCTGACATTGAAAAAATAAAATAAAGAATTTTGTATTTGGTTGCTCAACATTTTTATAC TGGAATTAAGTTGGGCCTGCAGCTCATCCATAGCATTTTTGGTTAAAAGGGAGAGCATTTTGTAATTTTATTGCAAAATG AATCCCCATCAGGGAGTGAAATAGAACACGAAACCATAAGCTCCCTAGCAGCGGGAGGAGCCCTGCCCAGGGCTTTGACC ACTTGCCTGTTTAAGAATGATCCAAAATTGCACAAAAAGCTGGAGATTTGTCCAAGTTATTGCGTGTGCCAATTGAAATC TTTCGTCACCGCAGTACAATTTAGCCACCAAGTTTGGGATGGATTGATGACTTGGTGTGGTTCCTTTATGCCTAGGACAC CAGACTATTGAACCATGGTCCATGAATGAAGAAAGGCATGCGATAAGAGTATATTCTAATTCTTGACGGGAGGGTACACC CTGTAAACACAACGTTCACGTTTTTTTTTTTGAAAAGATTAGGTTCAGAAGAATTACGGGAAGAATCAGTGGAAGAAGAG ATTCTTTTTTTGATCTTTCCAAGAACTTCTTCTAAAGCATGAGTAACAAATCCATTCCATGAATCTTTATTATCTTATCA TTTACAGGGAAAATCTTGCTACCCCGCATCACAGTTCATGTTACTGTTGTAGAAATGTAGAATGCTTTAGTTATAGGCGA ATTTGATTTTTAAAGTGGTGGTGCTTCTGCTTCCATGTGATATTTGGTCCTTGGAAACTTGAATCTAGGATAATGTAGTT ATGATAATTGGGCCATGTGATATTAAGTTCTGAATGGGTTGTGATTAAGATTAATGGAAATCAAAGGGGAACACTTTAAA AGTTCTATACCATACTTTGATTTGAATAAGGCTTCTCTAAAGGGAGTTTGTTCCTAAATTTAGCACGTAAAGCTGTATCC AACTTTGGTTCAATATAAACTAAACAGTGCATTGTGATCTCACCCCGCTAAATTTTGAAGGTAGGTACTCTCTGACATTG TTACTTTAAAGACAAACTCACTTTAGAGATTCTTTTTCCCTTTAATTTATACAAACTACAAAGGAACCACTAGAAGTAGG GTAGAAATGATGAGTACATATAATATGGACATGATACTCTTGCAGTCATACTCTGTGTAAGACATGCAAGCACACTAGCA TTCTTCCGTATCCTTATTAGTCTGTCATTTCAAGTTCTTCTTTCATGTAGGTGGGAAGCACTCTTGACGCTGTAGAGGAA ATTGTGGAAGAACAAGATATGGATCTCTTGTTCTCAAATAGGTATTATCGTGGAGACGTATGATGATTATTTATTGGTCA TTACAAATTTACAATTACAATGTGTTGATTATTTGAACTCAATAGAGAAACATTTACCCAAATGCAGGAGTAACATAATG GATGTTGCTGAGAATCTGTCTGCAGCAAAGAAGAATGAAATCCAACACTTAATGCATATGGTGCAATTGGTAAGTACAAT CTGTATGCATCCTCATCAGTTTGTGCTGCAAGTGGACTAGTAAACAAATACTTTCTTATTCATTGTTTGAAGTATTTGTA CGATATGTGTCTTTTTAGACAACATTTTCATTTCATTTTTCTCTGGTTATCCTGTCTCAACTCACCTAAAAGGACAAAAT ACTCTTTCCTTTCATCTCAGTGGTGGTGTCATTACTTTTAAATTATCTCCTCTTTCCAATTGGGGGATTTATTTTACTTG TCTCAAATTGGAATAGCCAAAATGTATTCCTTAGTTTGTGGACTCCAGAAATAACCCTTCACTTTGCTATGGCCTTAGTG CCGAGCTATTCCTTGCAGCATAACAGTTCTACTCTTTGTCCGCACTGCTCTCTACATACAGTGAAATGTTACCACCGCAA ATACGTGTTAAATGCTTAGAACATAAAACATGTACATTATAATTTATAATTTATACATCAAAATCACATCCGAATGTATA GATAGGGAGCTGAATAGGTGATGTCTTGAACTTGCAACAAACTACTAAGTAAATTTGGCCAGTCCACTAAAACATTACTG GTTTAAAAGAGTGGAGGTTTTCTTAGGCCCTTATATTCTGGTTATTTTTCTGTGGCTTCTGACCTTGTATTCCGTTTCTC TAATTGCCATGTCATTTGGTTAGGGGGAGGAACAGAACCAACTGACTCGTGACCGGTTACAACTCCTTAGAGAAGGCAAT CAAGTCTTGGCTGGTGCTTCGCAGGCTGTTGAGAAGGTGAAAGATTTCTTAACTTGCTACTCTTAAATCATTCAAATGGC AAAATATTATAATTTTTATATCTTGTAACTATATTTGGTTTTTTTTGCCGGCTGCATGTTACGCTTCATTCTGCTCTTCG CATATTATGCATAATTACCAGTTTAGGAGCATGAATTCAAATTATGGAACGAACAGCCATGATGGGATCCGTGATATGTA ATGTGGCCAGCGCACGCTCTCCTGTAAATTCACAAAAGTTTCATCCCCTGGTGAACCATAATTTGTATGTTGTCGCAATG CTTCTGAAGATTCAAATATTCACAAGGCAATCTTAGTAAAGAAGCACCTTTGTGTGGGATCAGTATTAGGGCTTCTACAT TTTGTGTGGCTTTAAGGTTCGTTGGAAGTAGTTGTAGTAGTTGTCCTAAAATTATGCACTGCCTTTTGTAAGCTTTGTAT TTATGTTTATATGACACTCACTAACAATATTAGTGAATATGATGGATTTCTTGTCCATCCTCTCTAGAACTTTTAAAAGC AATCACTGCAAAATGCATATGATGGATGCCTGATTCACTTTTTCAAACACTTCTACAACAAACTGGATCGGTAGCCCAAA TGAACTAATTGTATTATGACTTAGCTGTCTCTTTATCTATATCTAACAAAAATGAGTAGTTTCATTTTAGTACTTGGCAA AACAATTCTTTTATAAAAGCTCCAAGCAAAACA
CDS sequence (LotjaGi4g1v0131800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAAAGGCCTGAACTTGGTGGCAATGCATCATCGTCTTCTTCAACTGGAATTGGTTCAAGGTTTTCCAATTTGAG CAAGTCCTTCAAGTTTGCTCTCCGTTCTTTGCTCACTTCATGCTCAAAGGAGGAATTTTGTAAAGCATTTTCAAGTTTTA CCAGCAATGAAAAAGAATTGCTCCATCGCCTATTTCTTCAGGTCATTACTTCTATGCATGAAAACATTGAGGATGAGTTT GAGAAAATCTGTCTTCACACACAGGTGGGAAGCACTCTTGACGCTGTAGAGGAAATTGTGGAAGAACAAGATATGGATCT CTTGTTCTCAAATAGGAGTAACATAATGGATGTTGCTGAGAATCTGTCTGCAGCAAAGAAGAATGAAATCCAACACTTAA TGCATATGGTGCAATTGGGGGAGGAACAGAACCAACTGACTCGTGACCGGTTACAACTCCTTAGAGAAGGCAATCAAGTC TTGGCTGGTGCTTCGCAGGCTGTTGAGAAGTTTAGGAGCATGAATTCAAATTATGGAACGAACAGCCATGATGGGATCCG TGATATGTAA
Protein sequence (LotjaGi4g1v0131800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKRPELGGNASSSSSTGIGSRFSNLSKSFKFALRSLLTSCSKEEFCKAFSSFTSNEKELLHRLFLQVITSMHENIEDEF EKICLHTQVGSTLDAVEEIVEEQDMDLLFSNRSNIMDVAENLSAAKKNEIQHLMHMVQLGEEQNQLTRDRLQLLREGNQV LAGASQAVEKFRSMNSNYGTNSHDGIRDM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 13 | 178 | 166 | 2.0E-47 | – | |
| PANTHER | 13 | 178 | 166 | 2.0E-47 | ||
| Pfam | 65 | 155 | 91 | 2.3E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nuclear MIS12/MIND complex | A multiprotein kinetochore subcomplex that binds to centromeric chromatin and forms part of the inner kinetochore of a chromosome in the nucleus. It helps to recruit outer kinetochore subunits that will bind to microtubules. Nuclear localization arises in some organisms because the nuclear envelope is not broken down during mitosis. In S. cerevisiae, it consists of at least four proteins: Mtw1p, Nnf1p, Nsl1p, and Dsn1. |
Expression pattern of LotjaGi4g1v0131800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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