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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0133500 |
| Transcript ID | LotjaGi4g1v0133500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | IQ domain-containing protein; TAIR: AT3G51380.1 IQ-domain 20; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|G7LAA6|G7LAA6_MEDTR IQ calmodulin-binding motif protein; Found in the gene: LotjaGi4g1v0133500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19461081..19465272) extracted from Lotus japonicus Gifu genome v1.2.
CCCCTCACGTTTCCATTTTCAGAAATTCAGACCATCAGTACCATAATATAAAACAGAGAAAATCATGTTCTCCTTTTCAG AGCAAACCTGTCGCCCACAACTCTCTCCTTGGTCCTTTCTTTACGCAACTTCCACCTAAAGAAGCATTGAGAGTGAAACA CATTTATATAATTATATCAACCACATTACACGCATTCCATTCCAAACATAAGAAAAGAAACACAAGCAAAATGGGAGCAT CTCACAAATGGTTAAGAATTGTTCGCAGCAAGTTCCTAAGATCATCCAACAAAGACAAAATAATCCTCCCTCCTCGTACG AGTGTTTGCACTAATCAAAGCGAGCTACCCATACTCAAAGATGTTGCAACCAACTCTACCACCACGGAAAACTTCACCAA TTTGCCAATACCACCAACCTCTTCGGCCAGGACGTTCCCCAAAGAGCAGATTGCGGCAATTAGGATTCAAGCTTACTTCA GGGGTCATCTCGTATGTTTTATATCCCAAGCAAGTTTTAAATTGTTGTTGCAGATAAATGCGGGTTAATGCGGCAGCAAT TCCGGTCGTGATGGCAGTGCAAATTCCTATATGTTGTGGCCGCAATTGGTGTTGTATAGCCCAATTTAAAACCATGGTTT AAAGCCCCTTATCATAATTTGAGGCTATTAATCTTCATTCATTAGCATAATGGTATATAGTTCGAAATTTGAATTAGAAA TATATATGATTCTGTTGTGATCTTATTTTTTGATTGATTGAACAGGCAAGAAGAGCATATGGGGCTCTGAGAAGCCTGGT GAAGCTGCAAGCATTGGTTCGTGGGGTGTGTGTGAGGAGACAATCACGTATAGCGATGCAGTGTATGCACGCACTAGTTC GTTTACAAGTCAGGATTCGTGCAAGGCAGTTACTTGGTGGGATTGATTGATAATGAATGAAATGGCACCAGAAATGCTGG TAAAGTTCATTATCATAAGATCTGCCTCTTAATTGATTTTGTGAAGAGTGAATTTGGGTGAAGAGTAGATTAATAATGAA AAATATATTAGAGTGCTAACCTACTAGTGCCAAACTTCTCTACTGGATATGCACATAAGGATTAATGAACAGGTTCGAAC GCAAACATGATTTCAGGTGTATCAAGGTACTGAGAAGCTGAAATTTGAGGCATAAAGTTTAGATTGGATTGGAGAAATAT AAATTCGAGTTCAAAGAAAATCTTAGCACATACTTTTGTCCATGGAAATATGGAATGTAGGTGCTATTGTCTTTGACCTG CTCAAGTTATTTTCTTTTCTTTTCTTTTAGCTAGGGATATGTTTAATGTTACGAACTGTTTTTGCAGATAAATCTTTTTT TTTGGTTAAATCTTTATGTACATATGTTATGACCAGCTTGACCCACCATTTTTTCTGTTAAACAGGGATGTGATTTCAAT TTGATTGGTTTTCACAATTTCAGCTTGTATTCCTATGGAAATCTTTTGTGCAAGGTAGAACTGCCACTTCAAAAAATTTG CCATACCCACGATTTTTGACCTTTTACCGACGATTTTTTGCAATTGGTATATAACAAATTTCTTTTAGTGCTTACTTTTA AAACAATTTGATAACTTATTTATAAGTCTTGTTCTTATCAACTAGGATTATACCCGTTTGTCCGTGCGATGCACGGATAA TTTTTCACGAACTCCTCTGTTAACTACTATTATTCAGAATTTGATATATATGGAATAATACAATGATGTATTTTCTAAGA CATACAATTTTAATTGGTCAAACACTTATATATCGTTATTATCTTATGTTTATGTTTAAATGTTTTATCTTTTTTATATA TCTATATGAATTATATGAGTTTCAAATGTTAATTGTGTTTGACCCCCGTCGACTTGTAATTTGGTGCCATCTTTACGGTA AAAAGATGAAAAGTTGGCTGAAATGTAATAATGTATTAGACTATGAGGGAGATAGTTGAAACTAAAAGAAAATATGTATA CACATATCCAAGAATAATGATTTATTTATATCTCACTTTCATTCCTATCTCATTTCCACACATTTCTCTATTTTATCTTC CTATATATCTAAGGTGGATGTGGATAAGAAATGTCAACAAAACATTATTCCATGAGTCCAAACCACTAAAGGGCAATGAT AACAGCAAGCACCCCCACAACACAATGAAAAATGAATTCACACAATATGTAGCTCATGCTAATGAAAGTTTCTTTGCTAA ACAGATCATCAAACAATCATAGAGAACAAAATTGAATAACAACAAATCAAAGTGTAATTCTTTTAGAAGACAAAAAGTCA AGTAAATAACAATTCATTCCAATTTAGGTTTGTAGTTCAACATTTTACAATACACTCAGAATCTCATTCAAAATATATAT AAGGCACCCTATGTAGGTACCAAAGACTGCAATTAGAGGATAAGCCTTTCTTAGGTATCGTCTCTCGTCTTGGCTTATTG TCAATCTGTATCTCTGCAGCAAAGGGGAAATAAGTCCAATAAAATAGAACTACAATGTAGTCTGCACAATCAAAGCACAT CAAGTAAGTTCACCTGACTTTTCTATAACCAAAGGATTAAAATTCGTGACTTTTCTAGGTGTGGTAGGGGTAAGCATATC ACCTTTCAAAGTACAAATTGAAGCTTAAAAAACTAAATTGTTTCATTTTTGTGGGCATGTACTCAAATAGCTTGTGGGCA TGTAAGAGTATTCACCAGAATTAGCTTCTACTTTTCAATTTAACTTGCTTCCTCCTTCATGCACTCACCAAGACCATGCC AATCCACTTAAAAAACTAAATTGTCTTCATACTGAGTAGAAAGTATGATTTCAGAAGAATGTACAGCTCTTCCTGAAACA AATAACAACGCATATTAGGATTGTATTCCCTAAAATAATAAAAAGAAGGTTAGATAAATTCATATTAACAAAGACAACAC CAGAGAAATACAAAACGATTTTAGCATCCAAAAGCTTTGAAACAACAAAATTTATAATGAGATTGAGTAATGAATACATA CTTCAGAGCAATGTCCATCAATCTGGTTAGTGGTTACCTCATTTGCAAGTCCGTTTGTCCAGTACCAGATGGAGATAAGA GGAACGAAGCTTGAAGACTAAGAAGATGTGCATCTTCGTCAGTATCCTGAACCCCATATAAAACCATTTATAAGAAAAAA ATTATGAAATAAAAACATGATCGAGACCAGAATCGGAGAGTGAGATGCATGGCATTATGTTTTGTAATTTCGACCACTAT ACTGCAAATACAAAATTAAAAGCCACAATCAAGAGAAAAATAAGAGATATGATAAAGTAATAAGCAAAATAAGATATTTA TACTAACAAATAGATCAAGTGCTATTATAGTACAACATGCCTCACCAGTCTTCTCTGGAGTAGCACTTTTGGCTTTCTTG GCAGAAACTGGAGTTCTTGAAGCATACTCATTGGGTCTCTTTTTGCCCTGATCCACCTACAAAACGTATAGATTAGAGCT GGTGAAGTCTTCTGCTCGTACAATCATCAAATAAATTATATTACAAAACAAAATAAAAGCATAACACAAGCATGATATCT TTTTTGCCATTTTAGAATTCTAAGATAACATCAATTACTACTCAATGAATTACACCCTTATATTCCCTTAATAATTTTAA TGAGAACAAAAATATTGATTAATTTTCTTAATATGTGCTTTAATCTTTTAAGACAATAAAAAGGAGAGTTAGTATTCCAT CAAAATGTATTTCCAATTAATCTAAAATGGCACAGTTGACGGTCAACGCTGGAGAATTCCGGTCATCATAATTTGCAATC AAGAGAGCAACCCCCACCTTGATGCGAAGTAGAAAAAAATATTTTCTATACAACATAAGATGGTATGAGGCATAAACAAA ATATCATTCATTCATGATCATGGTTTTGAAGAAATCAGCTGATGAATTCACAGTATGGTAGTAAAGTTCCAAAAGCATAA TTTGGTAATCATGAGTAGAAGGGAAATACAGTGGGAAGAATGAAAATATGCTACAGATAGACAGCAGGAATGGCTTCACA AAGCATCTCTTTGTTCCTCTCATTGTGAAAGTGGGACGCATTTGTGTACTTGGGTGGTAATAATCGTGAGGCACAGAATA TAAGAAGGAAAAATAGTGCATGTATGAAAATT
CDS sequence (LotjaGi4g1v0133500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGCATCTCACAAATGGTTAAGAATTGTTCGCAGCAAGTTCCTAAGATCATCCAACAAAGACAAAATAATCCTCCC TCCTCGTACGAGTGTTTGCACTAATCAAAGCGAGCTACCCATACTCAAAGATGTTGCAACCAACTCTACCACCACGGAAA ACTTCACCAATTTGCCAATACCACCAACCTCTTCGGCCAGGACGTTCCCCAAAGAGCAGATTGCGGCAATTAGGATTCAA GCTTACTTCAGGGGTCATCTCGCAAGAAGAGCATATGGGGCTCTGAGAAGCCTGGTGAAGCTGCAAGCATTGGTTCGTGG GGTGTGTGTGAGGAGACAATCACGTATAGCGATGCAGTGTATGCACGCACTAGTTCGTTTACAAGTCAGGATTCGTGCAA GGCAGTTACTTGGTGGGATTGATTGA
Protein sequence (LotjaGi4g1v0133500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGASHKWLRIVRSKFLRSSNKDKIILPPRTSVCTNQSELPILKDVATNSTTTENFTNLPIPPTSSARTFPKEQIAAIRIQ AYFRGHLARRAYGALRSLVKLQALVRGVCVRRQSRIAMQCMHALVRLQVRIRARQLLGGID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 138 | 133 | 2.9E-41 | – | |
| PANTHER | 6 | 138 | 133 | 2.9E-41 | – | |
| SUPERFAMILY | 70 | 116 | 47 | 1.46E-5 | ||
| SMART | 71 | 93 | 23 | 9.2E-5 | ||
| ProSiteProfiles | 72 | 100 | 29 | 11.5 | ||
| Pfam | 75 | 92 | 18 | 2.3E-6 | ||
| SMART | 94 | 115 | 22 | 130.0 | ||
| ProSiteProfiles | 96 | 123 | 28 | 7.181 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0133500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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