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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0133700 |
| Transcript ID | LotjaGi4g1v0133700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT2G17030.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q3EBZ2|SKI23_ARATH F-box protein SKIP23; TrEMBL-Plants: tr|A0A151QQP9|A0A151QQP9_CAJCA F-box protein SKIP23; Found in the gene: LotjaGi4g1v0133700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19476556..19479798) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTTTTTTCCTTTATCCCAGGTTTCATTGGCACCGCACCTTCTTCACTCGTTGCAACACTTCAAAGCCACACACAGAG AGCAAGTTCATTCATTCATTCCTCTGTTCTTGTTCTTCTTCAAAGTCAACACCACCACCACACGCGTCTTTTCATCCGCC ATGGACGAAAAAGTACCCTGGTCTGAACTCCTCCCCACAGAACTCTGGCCCAAGATCGGAAAATCCCTCGACAACCACAT CGACGTTCTCCGATTCCGCAGCGTCTGCATTTCCTGCCGATCTTCCATCCCTCCTTCTCTTCCAAACTCTCCCTCCTTCC CTCTCCAAATCCCTCACCCCATGAACAATTCCACTGACACCTTCCTCATCCAATCCACCATCTACCGCATCGAACCAGGT CACGCAACTTCAAACCCCAATTCCAAAGGCTGGTTGATCAAGGTTGAGGAATCGAAGAATCGTCCCTTGGTTTTGCTTAG TCCAATCTCCGACCGCAAAATCTTCTACCCTCTTGCCACTTCTCAGATGCTCTGGAACTTAATCGACCACCGTGTCATTG AGGTTTGCAAATCGTACACCATCAAAACCTCTGGGAGATTCTCCTCCGCTGTGAATAAAGTTGTCTTGTTTCCTAACAAT CCATGGATCAGCGTTGACGATTGCGTCGCTTGTTGCATTTTTCTAAATGGGAAATTAGGGTTTATGAAAATTAGGGGTGA CAATGAGAATGAGAATGAGAATGACAAGTGGGTGCTTGTGGATGACAAGAATTTCTACTATGATGATGTGATTGTGTTCA AGGGACAGTTTTATGTGACTGATAAGTGGGGGACTATTTCATGGGTTGACACTTCTTCATTGAAGCTGATTCAGTTTTCC CCTCCTTTGTGTGGGTTTGGGAACAGGAAGCATTTGGTGGAGTCAAATGGGAGTCTCTATGTTGTTGATAGGTTCTGCGG GGAAGGCGAACCGAGGAGAAGAAACTATGTTGGACGGTTAGAGGCTGTTGTGGAACATTTCAAAGTTTATAAGTTGGATG AAGAGTGGGGAACATGGGTTGATGTTAAGGATTTGAGGGATAGAGCGTTTGTTTTGGGTAATAGTTGCAGTTTTTCTGTT GCAGCTAAGGAGTTGATTGGATATCAAGGGAACTGTATCTACTTCATTGATATTTTCGATGTTCGAGTGTTCAACTTAGA GGATCAAAGCATCATTACCATTGACTTTGATCCTTTTCTTGAGAAGTATTTTTGGCACCCATCTTGGCTCACCATTGCAG GACATAACCAACTTCGCATTAATTGAGTTTGAAGGTATATATTCTTCAATTTCTCTTCCTATATCAGCTTAATTCTGACA CACAGAAGCTACTCACAATAGCTTCTTCCCAGAATTGATTATGGATTTAGAATCAATTATAGAAGGATTTCCAAATATGT ACTTAGTAATGTGACTTGCATCTTACCATATGAGTTATGACCATAACTTGGTTCTTAACGGGGTGATTCATTGCTTACTA ATAATGCTTCATTCAATCCAAACTTAGAGAGTATTTGCTTATCATAATTGGATATTCTAGTGGACCAACCCTTGCTATTT GCGTACGTAGGGATACTTTTTGTGGTCAAAACAGTTACAAGCTTCCATATGAAGGACACCTCTCCCTGAAGAAGTACAGA GTGCAGTCACTTGTCCCTAATAGGTGCAAAAATGGAAAGTTAATCTTGATTTGTAGAAAAGTGGCTTTCCTATCTGTGTA ATTATTGGTTCATTTGCTAAATGATCAGTGTCACACGATGGCGGACATGAAAAGCTTGACTTCATGGGATCTGCCAATTC CACTTTGTAACAAGGAAAGAATCAAGAACATATGTGTGATATTTGACTATTTGTGGCACTGACAGTAGCATATAATTAGA TTGGGTTTTGTAGTTCAAGGATGGGAGCGTATGTAAATCAATCAGTTATCTTCTACTCCCTCCGTTCCTTATTAACTGTC AACTTTTAAGAATTTTTTTTTGTTTCTATATAACTGTCCACTTAGAGTTTCAAGAGAGCATTAATGAATGTTTTTCCAAG AAATGCCCTTACATAATCAATAAATGAAGAAAGATAAAATACATTCTAAAGGGTGATATAGAAAAATAAATAATACTTTT ATGAAAATTAACACAATTAATTGCTTTTCTTAATTTGTGTGAACCTTCCCTTCCTGGACAGATAAATAGGAACGTAGGAA GTACTTGTTCTCTTACTGCAGTCAAACATGTTTCTGTCTTGGGTGAGAATTTAATTCTCAATTCATGTTTTTTTTTATAA GGAAAAAAATGCATTAAAATGACTACAGGGCTACTCCAACCCTTAATAGTTAATACAAGGCTTAAATAAGTTTTTGGTCC CTAACCTTTACCAAATGCCTGGTTTTCGTCCCTCGTCGGAGCAAAGGTGGGTTTTAGTCCCTAACCTTTAACACAAAATT TGGTTTTGGTCCCTCCGAAGCTCTAGGTCAACGCCGGAGCTCCGGTGGCCCATGTGGCGTAGCCACGTCAGCTCAATGGG GTGACGTGGAATTTTTTCCTTTTCATTTTAAATATTAAAAAAAAACATAAAAAAAAGCATAATCAAATAAAAAACTCTCA ACCTCCTCTTCTTCTTCTGCTCCTCACCAATCACACTCAAAACCCCATAGCCAAAAGCTTAAACCCAGAATGCAACCCTA CCTCCTCCTTCTTCTTCTCCTTCCCTCTCACAACTGCAGTAACAACAGAATGCAACCTCACTGTCACACTTCTCATCCAA ACCCTGTATTGAAGAGTGAAGACAAAGATCCAACCCCAATCCACCAACAACCCTCTCAACTCAAGAGCAATCCAGAAAAC CCAGAAACTATGAAGAAGAAGAACAGTAGTAGCAATTACAAGCCAAAAAACAGCATACACAAGCCAAATCTCATTTTTCC TCATTAATGGAAGAAGAAACAAGATGAATCAGATCAGAAATTAGAGAACCCTCACCGCAACCCAAACCTTGCTCTCGCCT CTGTCATGAAACTCAAACGTCACCACCGCATCACACCACCTCCGCTAACCATCTCGCCTCTGTCATGAAACCCAAAAAGC TATAATTGGGACTTCAACGCGAAAAGGAAATATCAGATCCTCTTCTTCACACGAACATGAGTGGTGATTGTGAATATAAA CTCGTTTTTATTTTACAGCGCGCATGAACTCAGCAAAGTAAAG
CDS sequence (LotjaGi4g1v0133700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGAAAAAGTACCCTGGTCTGAACTCCTCCCCACAGAACTCTGGCCCAAGATCGGAAAATCCCTCGACAACCACAT CGACGTTCTCCGATTCCGCAGCGTCTGCATTTCCTGCCGATCTTCCATCCCTCCTTCTCTTCCAAACTCTCCCTCCTTCC CTCTCCAAATCCCTCACCCCATGAACAATTCCACTGACACCTTCCTCATCCAATCCACCATCTACCGCATCGAACCAGGT CACGCAACTTCAAACCCCAATTCCAAAGGCTGGTTGATCAAGGTTGAGGAATCGAAGAATCGTCCCTTGGTTTTGCTTAG TCCAATCTCCGACCGCAAAATCTTCTACCCTCTTGCCACTTCTCAGATGCTCTGGAACTTAATCGACCACCGTGTCATTG AGGTTTGCAAATCGTACACCATCAAAACCTCTGGGAGATTCTCCTCCGCTGTGAATAAAGTTGTCTTGTTTCCTAACAAT CCATGGATCAGCGTTGACGATTGCGTCGCTTGTTGCATTTTTCTAAATGGGAAATTAGGGTTTATGAAAATTAGGGGTGA CAATGAGAATGAGAATGAGAATGACAAGTGGGTGCTTGTGGATGACAAGAATTTCTACTATGATGATGTGATTGTGTTCA AGGGACAGTTTTATGTGACTGATAAGTGGGGGACTATTTCATGGGTTGACACTTCTTCATTGAAGCTGATTCAGTTTTCC CCTCCTTTGTGTGGGTTTGGGAACAGGAAGCATTTGGTGGAGTCAAATGGGAGTCTCTATGTTGTTGATAGGTTCTGCGG GGAAGGCGAACCGAGGAGAAGAAACTATGTTGGACGGTTAGAGGCTGTTGTGGAACATTTCAAAGTTTATAAGTTGGATG AAGAGTGGGGAACATGGGTTGATGTTAAGGATTTGAGGGATAGAGCGTTTGTTTTGGGTAATAGTTGCAGTTTTTCTGTT GCAGCTAAGGAGTTGATTGGATATCAAGGGAACTGTATCTACTTCATTGATATTTTCGATGTTCGAGTGTTCAACTTAGA GGATCAAAGCATCATTACCATTGACTTTGATCCTTTTCTTGAGAAGTATTTTTGGCACCCATCTTGGCTCACCATTGCAG GACATAACCAACTTCGCATTAATTGA
Protein sequence (LotjaGi4g1v0133700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEKVPWSELLPTELWPKIGKSLDNHIDVLRFRSVCISCRSSIPPSLPNSPSFPLQIPHPMNNSTDTFLIQSTIYRIEPG HATSNPNSKGWLIKVEESKNRPLVLLSPISDRKIFYPLATSQMLWNLIDHRVIEVCKSYTIKTSGRFSSAVNKVVLFPNN PWISVDDCVACCIFLNGKLGFMKIRGDNENENENDKWVLVDDKNFYYDDVIVFKGQFYVTDKWGTISWVDTSSLKLIQFS PPLCGFGNRKHLVESNGSLYVVDRFCGEGEPRRRNYVGRLEAVVEHFKVYKLDEEWGTWVDVKDLRDRAFVLGNSCSFSV AAKELIGYQGNCIYFIDIFDVRVFNLEDQSIITIDFDPFLEKYFWHPSWLTIAGHNQLRIN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 370 | 366 | 7.3E-130 | – | |
| PANTHER | 5 | 370 | 366 | 7.3E-130 | – | |
| SUPERFAMILY | 201 | 373 | 173 | 8.24E-5 | – | |
| Pfam | 301 | 346 | 46 | 1.6E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0133700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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