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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0133800 |
| Transcript ID | LotjaGi4g1v0133800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Conserved oligomeric Golgi complex subunit 8; TAIR: AT5G11980.1 conserved oligomeric Golgi complex component-related / COG complex component-like protein; Swiss-Prot: sp|Q9JJA2|COG8_MOUSE Conserved oligomeric Golgi complex subunit 8; TrEMBL-Plants: tr|A0A1J7IAD0|A0A1J7IAD0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0133800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19492499..19497978) extracted from Lotus japonicus Gifu genome v1.2.
AATCCGTGAAGCAGTTCATGAACAATCCGGTTTTGAGATAACTATTCCAATATTTGACATTTGAGTCTCAGTATACCCGA CGACGTCAGAACAATCCTCTTCTCCGACGCAGATCTGCATCTCGCCCTTTGAAGGTACGTCTCTCACTCCCTGGCCCCTT CTCAATTTCCCTTGATGCGTTGCTTTGCTCCCCTATGTCTGATGCTTGATTGAATAGTTTCATTTTCATCACTGTGAATG CTAGGCCTGCCCAACTTACTATCAATTTGTTAATTTAGCGTAGCACTGCATTGGATTATGCTTATATATCTTGAATGGAG TCTGATTTGTTTGCAACCCTCACAAACAATTTAATTACCCTAGTTAATATGTTTTTCACATGCTTAGGTAGGAAAGCGTA TATGAAAGGTGACACAGTTATGTATTGAGCGATCCAGATAACAAAGCATTGCGATCTGCGAAGGAAGGGAGAGACTGAGA AAGAGGAGAAGAATGGAGTGGGAACCTGCAGGTGCAGCAGGTACGGAGATGGAAGTTCCCCTTCCTCTTCCTCTGGCATC GGACTCGCAGCAACCCTACGTCTCTGAGCTTCTCTCGTTCACCCTCGATCGCCTTCACAAGGAACCCGAACTGCTTCGTG TCGACGGTGAGCGGATCCGCAGGCAAATGCAAGAGGTGGCCATTGGTAATTACCGCTCGTTCATTGCTGCCGCTGATGCC TTGCTCGCTATTCGCCAGGAAGTCTCCTCTATTGACAATCATCTTGAATCTCTGGTATTCTTTCATTTCCTTTATGTAAT GTCTTTGTATGTATGCGTGTTTTTAGAAGTCACATGTTCAACAATGCAGTTTATTTACTTACTATTGCAAATATTGCCAT GCTGTTACTGCATTGAGTCAGGAATCGATTTGGATGAGTTATTTTGTGAATTTAGGGTTTAGGAGCACAAACACTGCACT ATACGGCATTTTGAAGATATAAAAATTGAATATGAACATCCTGATTTTTGATTGCTGGGATGAAGTTATAGATTCATGTT TGCCGATGTTGCTAGTTATTTCCATACATGTAGCTCTGTAGAAGAGTATGCAGTAGATTTTTTTGGATTTTAATTCACAG ATTATATGAAGTTCTTAGATTTGCTACTGAGAACTATAACAGCCTAATTATTAAACCATTAGGTGAGATTGATTCATGGA CCACTCATCATCCCGTTATCGTATCCAACTTACTCCACCGCTTCTCTGTTAGACCCACCTACTACAATAGTGCATTACCT CCAAAAGAATATGTCAGGTTCCCATTTAATCAAGCTTCTTTTGTTTCTTGTTCTCTTCCTTCTTGTTGCTGATCCTTCTC CATTTGTTTCATCCAAGCTTTGAAACCTTTTTCCAACAATTCCTAATGAGCGTCCCTCTTTGTGTGTGGGATCGGAAATG GGATAGCTAGGCCTTACCTAAATGTGTTTGATCTATTTTCCAAGCTGATGGCATGTGCCTATCATAATAACTTGTTATAG AACTTTTTTAAGGCCTGATCTTATGTAATGGCGTGTTCGGAAAAATGTTACTTCTAAAGTAAAAAGTATTTTAATTTGAA CTTGACCTTAGACTTTCTTCTCCATTAGGTTGCATTGGAAAATCGTGAAAGTGGATTTTTAAAGTTGACAATGTTAAAAC AAACACATACTGAATAGTCTAACAGGTTTAATTCTTTATGTAGGCTAAATGGCCTAACTAAATAGGAAAACAGATTATAT TATGTCAAGACATTTCAAAATCCAATTATATAATAAAAACAGGTTTAAGTCTCTTTGTCATAATCATTTTCAATTTTTTT ATGTATATGTCTGATTTGGGCATTTATCTTCTATCTCAGATAAATGAAATTCCAAAGCTGACATCTGGATGCACTGAGTT CATAGAATCTGCGGAAAATATTTTGGAGAAGAGGAAGATGAACCAAACAATGCTATCCAATCATAGTACTTTGCTTGACT TGCTAGAAATTCCTCAACTTATGGACACGTATGTTAAAAAGATAAATTATGCAGTTAAACTTGTTAAATTTTTAATTTCC ATGTACCAATGGTCTCACATGCCATGTGAGTATGTTACAAGTACATCATTTGTGAGAAGCCTTGCAAATTCCTATGTTTG CAGGTGTGTACGAAATGGAAATTATGATGAAGCCCTTGATTTGGAAGCATATGTGGGTAAACTTTCAACCATGCATCCAA AGTAAGTTTCCACCCCTCTTCCATGTTGTTTAACATGTAATTTAATTTTAAATGGAATACCCCCCCCCCCCCCACCACCA GTTTCATGAGGAAAGGCTTGTTATCTTTTGCTCCTCCTTGTTACTAAATGTCTCCCTCCCTCCTAAGGTTACCAATCATT CAAGATTTGGCCGCAGAAGTTAGGCTGACCACCCAATCACTTCTTTCTCAGCTTCTTCAAAAACTACGCTCAAATATTCA GGTTCATGCAGTGGTTATATTTAATACATGAACAAAGGCCACTTGGTTAGTATATAAAAATGTTTGGATTTATAGTTTCT TATTAACTTATCTTCCATTGCTAGTTGCCTGAATGCCTGCGTATTATTGGATATTTACGGCGAATAGGAGTATTTAGTGA ATATGGAATGCGTTTACTGGTAAGGTTTAATGATATTTTTTTACCATTCAAACTTCTTTTTATCTTGAAATTAAGCTATT CCTTCTTTTCTCTTGCTTCTATTTGACCCTGACAGTTATTTATTGTCAGTTCTTAAGATGTCGAGAGGCATGGCTAACTG GCCTTCTTGAGGATCTGGACCAGACAAATCCATATGAGTACTTAAAAGGAATGATTAACTGTCACAGAATGCATCTTTTT GATGTTGTGAATCAATATCGAGCAATATTTGCTGATGACACATCAGGAAGTGAGGAAAATTATGATGGTGGACTTCTTTT TAGCTGGGCAATGCACCAAATTACCACACACTTACAAACCCTGAAACTTATGCTTCCAAAGATAACTGAAGGTGGATCCC TCTCAAATATTTTGGATCAGTGCATGGTGAGCTTCTTCCTTCATACCACACTGATGTTGAAAATGGAAGGAATAGTGATT TTTGTATAGACTTAAAACAGGTGATTTAGAAATATGAACTATGTAAATTTGGATCTACATTAAATTTCTAGCATCCCCCA CCTGGTTGATAAATAGGTAAGAAGATAGGAAAAAATTTCTTGAGATTGGCCTGCCTGGGCCTGCTTAGTATGGTGAAAAT GCATTTGGCCTTCTGTTTCATGAAGAAATTACATTCACTTTTTCTATTTTCTTATCGAATCTGTTTTGACAGTACTGTGC TATGGGACTTGGTTGGGTTGGACTAGATTTTCGAGGCTTGCTTCCATCACTTTTTGAAGAGTAAGACATGTTCCATTTTA TGATGTATTCTATTAGGTCAAATCACACTTCAGCATTTTTTAATATATAGCTTGGTTTGTTTACAGAGCAGTTCTCAACT TATTCTCCAAAAATATGAGTACTGCAGTGGAGAACTTTCAGGTACTGCTTCAACATTTGGGAACCTCTCCTCTCCCCTCC CCTCTATTCTTTTTTACCCTTTTCCTTTGCAAGTGTTCTACTCTTCTTTTTTATGCTGTGATTAAGAAATTGATTTGTTC TCAGTTGGTCTTGGATTCACATCGGTGGGTTCCCCTGCCAGCAGTTGGCTTTTCGAATAGTGTTGGTGAAGAAAGTCAAG AAGATGTAACTCCACCCTCTTATTTGATGGAGCATCCTCCTCTTGCTGTTTTTATTAATGGTAAGCCGAGTTAATGTTTC TGCTATATTACTTTTAGAAATTGCTTGTCCATTATCCTTTGTGTTATTTTTTACTGGATAGTTTTATTTCAAAATCCACT ATTGGATAGAAAGTTCTTATCGTATAGATTGATAAAAATTTCGTTAATGGGTCATTGATATCATGATATGCACATATATG CTTTTAAAACATATAAAAATGAGAATCATTTGATTAATTCTTCTTCTTGTTCAATTTTACAATATTTGACCCAAATAAAT AATCAACTAATCAAGGTAATATATGGATATGGTTCAGTTGTTGGGATCAACAGAAGTCTTAGAAACTTTCGTGGTTGATG GGTGATGCTTTATTGCATTTTGAAGCTTAATTGCTTATCCATTCTAAACCTTTTATCCATTTGCACTGACATCTCTTTGG TTGTTCCAGGTGTATCTGCAGCAATGAATGAGCTACGTCCATGTGCCCCAATAAGTTTGAAACATGTGCTTGCCCAAGAA TTGGTCAAGGGATTGCAAGCTGTTTCTGATTCGTTATTGCTGTACAATACAACCCGGGTGCTCAGGGCTAACGAATCAGG ACTTTTCCTTTCACTTTGCCGGGCATTTATTGAGGTGTTTTATAACCCTACAATTTGATTCCTGTTTCTAATTTGAGCTG TTCTAAACAATGTTTACATTTTTTTTATAAAATTATGAAAATAGTGTTAAGACTTAATACTTATATTAAGCACCTCACTA TTACAAATTTACAATCCAAGTGGCTTTCTGTATACATATTACTGAATACCTCAAAATTCAATTTATAGGTTGCTTATCCA CACTCTGCAACAAGTTTTGGGCGTTGCTATCCTGGTGGAGCAACTGTTATTATGGAAGCGAAGGATGTGTATCAAGGAAT CAGCCGCCTATTAGAGGCCTCCTCTGCAAGAGAACTCCCAAAACCAGTAAAAAATGTCGAAATCAGCAGCGTAGCTGAAA ATGGTGAACTGCCAAAAATGGAAAATGGGGAAACACCTGATGCCAATGCCAACGAATCTGAAGCCATCAATGCTGACGAG GTGAACGAAGGGATGAACTCGCAGACAGAACAAGAAAACACTAATCTTGAAAAGGCGGTTGAATAATGACATATAGGGAT GGACAAAGTTATTCCTTTCCTTACTATCGCTCCCTGTTTCAGTTTTGTTTTGTTTTATTTTTCCATTCTATGTATCTTTG TAAACGGGTAACCCCTGCTGTTGTTATATTACCTCATAACCTCATTATTACATAATATGAATAGGCTATAGAAAGCATTG AGTTGTTCAAGTGGGAAGAAGATTGTACACAGATTACTTGTAGGTATTAGTGGGATAATGTTTTCATTATTATACATTCA ATTCAAGTGCCTTTTCTCTCTTTCTGAATTTCATAATACGTCTTGTGGATGTCTATTGTGATGCTTATTTTTTAAAAGAT CATTAGCAAAATTCTATTTAAGTGGGGGCTTATTAGCTAAATCACAGTTTCTATATGCATAAGTAAAACACATTTCCTTC AGTCCAAGCTAATTAATTAACTGGCTGAAATTCATGGGAAACACAAACTCAGTCCCTCCCTCAAATAGCGTCTTAGCTAC CAACTCTGAAGCTTTCTCCGTTGGATTAAACCAATCCCAG
CDS sequence (LotjaGi4g1v0133800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTGGGAACCTGCAGGTGCAGCAGGTACGGAGATGGAAGTTCCCCTTCCTCTTCCTCTGGCATCGGACTCGCAGCA ACCCTACGTCTCTGAGCTTCTCTCGTTCACCCTCGATCGCCTTCACAAGGAACCCGAACTGCTTCGTGTCGACGGTGAGC GGATCCGCAGGCAAATGCAAGAGGTGGCCATTGGTAATTACCGCTCGTTCATTGCTGCCGCTGATGCCTTGCTCGCTATT CGCCAGGAAGTCTCCTCTATTGACAATCATCTTGAATCTCTGATAAATGAAATTCCAAAGCTGACATCTGGATGCACTGA GTTCATAGAATCTGCGGAAAATATTTTGGAGAAGAGGAAGATGAACCAAACAATGCTATCCAATCATAGTACTTTGCTTG ACTTGCTAGAAATTCCTCAACTTATGGACACGTGTGTACGAAATGGAAATTATGATGAAGCCCTTGATTTGGAAGCATAT GTGGGTAAACTTTCAACCATGCATCCAAAGTTACCAATCATTCAAGATTTGGCCGCAGAAGTTAGGCTGACCACCCAATC ACTTCTTTCTCAGCTTCTTCAAAAACTACGCTCAAATATTCAGTTGCCTGAATGCCTGCGTATTATTGGATATTTACGGC GAATAGGAGTATTTAGTGAATATGGAATGCGTTTACTGTTCTTAAGATGTCGAGAGGCATGGCTAACTGGCCTTCTTGAG GATCTGGACCAGACAAATCCATATGAGTACTTAAAAGGAATGATTAACTGTCACAGAATGCATCTTTTTGATGTTGTGAA TCAATATCGAGCAATATTTGCTGATGACACATCAGGAAGTGAGGAAAATTATGATGGTGGACTTCTTTTTAGCTGGGCAA TGCACCAAATTACCACACACTTACAAACCCTGAAACTTATGCTTCCAAAGATAACTGAAGGTGGATCCCTCTCAAATATT TTGGATCAGTGCATGTACTGTGCTATGGGACTTGGTTGGGTTGGACTAGATTTTCGAGGCTTGCTTCCATCACTTTTTGA AGAAGCAGTTCTCAACTTATTCTCCAAAAATATGAGTACTGCAGTGGAGAACTTTCAGTTGGTCTTGGATTCACATCGGT GGGTTCCCCTGCCAGCAGTTGGCTTTTCGAATAGTGTTGGTGAAGAAAGTCAAGAAGATGTAACTCCACCCTCTTATTTG ATGGAGCATCCTCCTCTTGCTGTTTTTATTAATGGTGTATCTGCAGCAATGAATGAGCTACGTCCATGTGCCCCAATAAG TTTGAAACATGTGCTTGCCCAAGAATTGGTCAAGGGATTGCAAGCTGTTTCTGATTCGTTATTGCTGTACAATACAACCC GGGTGCTCAGGGCTAACGAATCAGGACTTTTCCTTTCACTTTGCCGGGCATTTATTGAGGTTGCTTATCCACACTCTGCA ACAAGTTTTGGGCGTTGCTATCCTGGTGGAGCAACTGTTATTATGGAAGCGAAGGATGTGTATCAAGGAATCAGCCGCCT ATTAGAGGCCTCCTCTGCAAGAGAACTCCCAAAACCAGTAAAAAATGTCGAAATCAGCAGCGTAGCTGAAAATGGTGAAC TGCCAAAAATGGAAAATGGGGAAACACCTGATGCCAATGCCAACGAATCTGAAGCCATCAATGCTGACGAGGTGAACGAA GGGATGAACTCGCAGACAGAACAAGAAAACACTAATCTTGAAAAGGCGGTTGAATAA
Protein sequence (LotjaGi4g1v0133800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEWEPAGAAGTEMEVPLPLPLASDSQQPYVSELLSFTLDRLHKEPELLRVDGERIRRQMQEVAIGNYRSFIAAADALLAI RQEVSSIDNHLESLINEIPKLTSGCTEFIESAENILEKRKMNQTMLSNHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAY VGKLSTMHPKLPIIQDLAAEVRLTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYGMRLLFLRCREAWLTGLLE DLDQTNPYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITTHLQTLKLMLPKITEGGSLSNI LDQCMYCAMGLGWVGLDFRGLLPSLFEEAVLNLFSKNMSTAVENFQLVLDSHRWVPLPAVGFSNSVGEESQEDVTPPSYL MEHPPLAVFINGVSAAMNELRPCAPISLKHVLAQELVKGLQAVSDSLLLYNTTRVLRANESGLFLSLCRAFIEVAYPHSA TSFGRCYPGGATVIMEAKDVYQGISRLLEASSARELPKPVKNVEISSVAENGELPKMENGETPDANANESEAINADEVNE GMNSQTEQENTNLEKAVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 14 | 574 | 561 | 9.1E-222 | ||
| PANTHER | 17 | 548 | 532 | 1.5E-233 | ||
| Pfam | 30 | 363 | 334 | 5.9E-147 | ||
| SUPERFAMILY | 130 | 349 | 220 | 3.56E-36 | ||
| MobiDBLite | 527 | 578 | 52 | - | – | |
| MobiDBLite | 543 | 578 | 36 | - | – | |
| Coils | 563 | 578 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Golgi transport complex | A multisubunit tethering complex of the CATCHR family (complexes associated with tethering containing helical rods) that has a role in tethering vesicles to the Golgi prior to fusion. In yeast, this complex is called the Sec34/35 complex and is composed of eight subunits (Sec34p, Sec35p, Dor1p, Cod1p, Cod2p, Cod3p, Cod4p, and Cod5p). In mammals the subunits are named COG1-8. |
Expression pattern of LotjaGi4g1v0133800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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