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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0136300 |
| Transcript ID | LotjaGi4g1v0136300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alkyl transferase; TAIR: AT2G17570.1 Undecaprenyl pyrophosphate synthetase family protein; Swiss-Prot: sp|Q8S2T1|DDPS6_ARATH Dehydrodolichyl diphosphate synthase 6; TrEMBL-Plants: tr|G7I9J6|G7I9J6_MEDTR Alkyl transferase; Found in the gene: LotjaGi4g1v0136300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19984775..19988192) extracted from Lotus japonicus Gifu genome v1.2.
ATCATATACGAATACGACAACCCCCGAGAGCCAATGAAAGCATTTCAACTCCGAGCGAGTGTCTTCTGACTCTGTTTCCA ATAACAACCAAACACACTTTGGTCTCGTTTTCTTTTCTTCCTCTAAAGTTTTCTCCTTTATCTTTGCGATTTTTCCAAAT TCTCGATTTGATTCCGATCAAATTCGAACTTCTGAACTGATCTCATCCATGCACGCATTCCTTCTTTGAAGGTATATTTA TTCCCTCCACTTCTATTCTCTGTTTCATTTATGCCAGATATCGATTCAATTTTTATCTTTTTCTTTGCAAAGGGTTTTGT TATTACTATGAAATAGTATAAATGGAATCAATGATAAAAATTGAATTGTTGACATGACTATATGGTGTTTGATAAATTGC CTGAGCTATTCATTTGTTCCAAATATACTTGTTGCAGCACTAGGGGTGTTTGAATATTGATTGTTTCCCCTGTGATAGAG TTTAAATGAAATTTTCTTTTGGAGTAAGGTTTGATACTTTCAAATCTCTTTTCTTAGATGTGTGTTGAGCCTGGAATGAA GCATTGGAACCTTGTAGCAGTAGTAATAGGTAATAACTACAAATAAGAACAGATGAGCTTCTAAATCCTAAAAATAAATG ATGTTAATGCCAAGGGCTATATGTCTAACTTGGCGGTTTCATTCTTCGATTTCGTAACCAGATTGAGGAAGTATATTGCT AATATTGTATATTAAAACTGCAATTAGTCTTAATAACGATCCCATCCTAACGCCCAATGAAAAATAGACCTTGGATTTTG CTCTAGCTTCATTGCTGCTAACTGATGGAGGAAGTACCTACTCGGATAGTTCTGTACAATTATACAGTAGTGTTGCTTAA ATCCTCAATAGAAGCTATCATTTATTGATGCGTGGCATTACCACTGGTTTGCTGAATATATGCTAGACCCTTTTAGTTTA GTGCCTGAACTTTGCCATTTATGATTTGCAAATTTCAAGCGTTGTTGGTCTTTTCTAATAATTTGGTTACTTATCAGTAT GGTCATGATCCATATTTTAAAATATTGATTTTACAAGTAATCATATAAGCTGAACTTGTTGTGTAACTAATTACTGTAGG CTTTCTACTTTTTGATACTCCTCTTAACAATGCAGATTAAATACTTCAGTGGTTTCTTGTGAGCTGGTATCGTGAGTTCA ACTGTTGTTGTTTTAACCTTATCTAGTGCTAACTTTAAAACAACTGTGCTCTCTTACATAGGTTTGTCTAAGACTCTACG AAGTTTATTCCTGAATACTTCAATGCAGAAAAGTACTGGAGGTATTACAAGCCACTTACTTGAAGGTTTATGTTGTTATC TAAGAAGATGCGTGTTTGCCATTTTATCTGTGGGTCCTGTGCCAAATCATATTGCTTTCATAATGGACGGGAATCGAAGG TATGCAAAGAAGAGAAACTTAGGAGAAGGTGATGGCCATAGGGCTGGATTTGCAGCTCTCTTGTCGATTCTTAGGTACTG CTATGAATTGAGAGTGAGGTATGTAACTGTCTATGCATTCAGCATTGATAACTTCAAAAGGAAGCCTAAAGAGGTTGAAA CCTTCATGGAATTGATGCGAGAAAAGATTGAGGAGTTACTTCAACAGGAAAGCATTATTAACGAATATGGTGTTAGATTA CATTTCATTGGAAACTTGCAGCTATTGGCTGATCCTGTCAGGCATGCTGTGGAAAAGGCAATGCGAGTTACTGCCCACAA CAAAGAAAGAGTTCTTTTGATTTGTGTAGCCTATACTTCTCGTGATGAGATTGTGCATGCTGTTGAGGAATCCTGCAAGG ATAAATGGAATGAAGTGCAAGCATCAAAAGAAGCAAAAGTTTCCAATGATGCATTTGCAAGGATTAATGAGGGCCAGGAA AGAAATGGTTTGGATCTACATTTTCAAGATTCTGGCACCAAAATTTGTAGTAGAATAGTTGACAGAGTGGAAGGTGGAGT GAAAGATGGCTTGCTTGAGCATAATGCTGAGAAACATGATTGTAATTACAGTGAGGCTGAAATCACATCTTGCAATGGGC TGGTTGAAATAACTGAAGAGAGAAGGTATAAGCAGAGTGGGCTTCCTTCTATAAAACTGGTGGATGTTGAGAAGCACATG TACATGGCAGTGGCACCTGACCCTGACATTTTGATCCGCACTTCTGGAGAAGCTCGCCTCAGCAATTTTCTTCTTTGGCA GACTAGTACCTGCCCTTTGTATGCACCAAAAGCACTTTGGCCTGAAATAGGTCTAAGACACCTGGTCTGGGCAGTATTGA ACTTTCAGAGACACCATTTTTACTTGGAAAAGAAAAAGAAACAGTTCTAATTGTAACCACTTCAGCCATAATTCTTAGTG TAATTCATGTGATGGTAGATTTCTTTTACTTTTTAGGCCATTTTATGTTCTTACATTTCTTTGTAACAGTTGAGACTACA AGAATTTAAAGGCCCGTTTGGTGGAGAGGATCAGGAGATAAGATATTGTAAGTGTATTCTTATCATGTCTTAATATTGTG TTTGTTGCACCAACGGTATATGATACACGTATCTGAATGAGTATCTTATCCCATTGGCCTAATGTAAAACTTTAATGTAA GGGGGACAATGGGTTAGAAATAAGTAGGGTTTTTTTTTTTTTTTTTATAGGCAAATGTTAGTTGTTAATTGTTAGTAAAT TAGTTTCTTCGCCAGGGTTTGAACCCTGACCCTTCACCCTGCAAATCATTTCATATCCCTTAGCTCACCAAGTGAGCTAC CCTTCCCCCTAGAAATAAGTAGGGTAAGATAATTTTTTTATTTCCTTTCTCCCTCTCACGCTCTCACCCTGACCATTGAC ATTTTCTGACAGGCTCTCCCCCTTATTGGCCTTCAACGATGGCTCGTCCTTCCCGTTTTCCGTCATCCTCGGTGTGCGTA AACTCTTCTCCGATAGCATCTTGTGTAGGTCGCATCTCTTTCCATCAAAGAAGGTATCAATGAGATTTCAAGAGTCCCTC ACTTTCTATCTTGTAACGGTGTTGCGACATCTGTGGATGTGCATCTTATCTTTGTCCTTCCTCTTCCATACACCCCTTGT GAGTTGTGAACCACCATTCTTCCCAGAACACTACGATACACCACCTTAACTTTGAATCCAACATCCCCAAACACATGTAC CCACGGAACCCAACTGATTGATCTTATTGTGCATTTCAGCTTTGCTTTTGATTTTTTCATAGTTATTCAATTGTGCTTTT TCATTTCTCGTTTCCACTATGGTTTTGCTATTACATCTTTTCTTTTACTTGCATACTTCTTGGTTCTTAGACCATACTTG ACAAAGGGAATAATAATGCATAATGTAACCTATAACTATACTATAAAACGAAAAGGCT
CDS sequence (LotjaGi4g1v0136300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAAAAGTACTGGAGGTATTACAAGCCACTTACTTGAAGGTTTATGTTGTTATCTAAGAAGATGCGTGTTTGCCAT TTTATCTGTGGGTCCTGTGCCAAATCATATTGCTTTCATAATGGACGGGAATCGAAGGTATGCAAAGAAGAGAAACTTAG GAGAAGGTGATGGCCATAGGGCTGGATTTGCAGCTCTCTTGTCGATTCTTAGGTACTGCTATGAATTGAGAGTGAGGTAT GTAACTGTCTATGCATTCAGCATTGATAACTTCAAAAGGAAGCCTAAAGAGGTTGAAACCTTCATGGAATTGATGCGAGA AAAGATTGAGGAGTTACTTCAACAGGAAAGCATTATTAACGAATATGGTGTTAGATTACATTTCATTGGAAACTTGCAGC TATTGGCTGATCCTGTCAGGCATGCTGTGGAAAAGGCAATGCGAGTTACTGCCCACAACAAAGAAAGAGTTCTTTTGATT TGTGTAGCCTATACTTCTCGTGATGAGATTGTGCATGCTGTTGAGGAATCCTGCAAGGATAAATGGAATGAAGTGCAAGC ATCAAAAGAAGCAAAAGTTTCCAATGATGCATTTGCAAGGATTAATGAGGGCCAGGAAAGAAATGGTTTGGATCTACATT TTCAAGATTCTGGCACCAAAATTTGTAGTAGAATAGTTGACAGAGTGGAAGGTGGAGTGAAAGATGGCTTGCTTGAGCAT AATGCTGAGAAACATGATTGTAATTACAGTGAGGCTGAAATCACATCTTGCAATGGGCTGGTTGAAATAACTGAAGAGAG AAGGTATAAGCAGAGTGGGCTTCCTTCTATAAAACTGGTGGATGTTGAGAAGCACATGTACATGGCAGTGGCACCTGACC CTGACATTTTGATCCGCACTTCTGGAGAAGCTCGCCTCAGCAATTTTCTTCTTTGGCAGACTAGTACCTGCCCTTTGTAT GCACCAAAAGCACTTTGGCCTGAAATAGGTCTAAGACACCTGGTCTGGGCAGTATTGAACTTTCAGAGACACCATTTTTA CTTGGAAAAGAAAAAGAAACAGTTCTAA
Protein sequence (LotjaGi4g1v0136300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQKSTGGITSHLLEGLCCYLRRCVFAILSVGPVPNHIAFIMDGNRRYAKKRNLGEGDGHRAGFAALLSILRYCYELRVRY VTVYAFSIDNFKRKPKEVETFMELMREKIEELLQQESIINEYGVRLHFIGNLQLLADPVRHAVEKAMRVTAHNKERVLLI CVAYTSRDEIVHAVEESCKDKWNEVQASKEAKVSNDAFARINEGQERNGLDLHFQDSGTKICSRIVDRVEGGVKDGLLEH NAEKHDCNYSEAEITSCNGLVEITEERRYKQSGLPSIKLVDVEKHMYMAVAPDPDILIRTSGEARLSNFLLWQTSTCPLY APKALWPEIGLRHLVWAVLNFQRHHFYLEKKKKQF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 355 | 355 | 7.4E-164 | – | |
| PANTHER | 1 | 355 | 355 | 7.4E-164 | ||
| Gene3D | 19 | 227 | 209 | 3.0E-62 | ||
| SUPERFAMILY | 30 | 190 | 161 | 7.85E-49 | ||
| TIGRFAM | 33 | 220 | 188 | 5.3E-48 | ||
| Hamap | 33 | 350 | 318 | 28.628 | ||
| CDD | 36 | 343 | 308 | 1.35383E-92 | ||
| Pfam | 40 | 344 | 305 | 2.1E-75 | ||
| Gene3D | 245 | 351 | 107 | 1.4E-24 | ||
| SUPERFAMILY | 262 | 343 | 82 | 4.05E-22 | ||
| ProSitePatterns | 295 | 312 | 18 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transferase activity, transferring alkyl or aryl (other than methyl) groups | Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi4g1v0136300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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