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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0137800 |
| Transcript ID | LotjaGi4g1v0137800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF241 domain protein; TAIR: AT4G35720.1 DUF241 domain protein, putative (DUF241); Swiss-Prot: sp|P50852|PTMCB_GEOSE PTS system mannitol-specific EIICB component; TrEMBL-Plants: tr|I3T9T9|I3T9T9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0137800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:20401460..20403026) extracted from Lotus japonicus Gifu genome v1.2.
CCAAGCTCAGCCCCTTTTCACATTCATTTACCAAATGGCATCAAGGCCTATGAGAGATACTTCTGAACTTCTTCCCCAAG CTTCATTTATTATCTACAGGTATAAATAGGGAAAGATTAATATCATTGAGTCCATCCCAACAAATTAGGAACCCTAGGCC TAAATCATGAAAAAGGCAACAATGGCTACTTTTTCCCCAAAGCACTCAAGCAAGTATAGTGCTAGATCTATTAGTTTACC AACAAGATCACACCCTAGCACAATTCAGATTGAAGAGGAGCTGATCAAGCTTAAATCATGGGAATCACCATCATCATCAT CTACCTCAAAGGTTGAAACAATTTGTTATGGTCTTTCTGGCCTTATAGAGTTGTACAAGTGTATAGAAGATCTTCTCAAA TTGCCACTCACCCAACAAGCACTATTCCAGCACAAGAATGAGAAATGGATCAATGACTTGTTGGATTCCCCTTTGAGATT CTTGGATCAATTGGGCAAAACAAGGGATTCAATTTTGTCAATGAAAGGAAGAGTTGAAGATCTTCAATCTGCACTCAGAA GGAGAAAGTTTGGGGATTTAGGAATTGAAAGCAATCTCTCTGCATATTGGAGCCTTAGGAGGAACATGAGAAAGGAATGC ACAAAATCTCTGCTTTTATTGAAGCAGATTGATGGGTCATTTGGAGCCTTTTTTCCTCTTGATCTTGATGACCACCTTTG TTCAATTGTGAGAGTGTTAAGAGAAGCTAGTTTGATCACTAGCTCAATTTTTCAGTCACTTGTTGTGTTTGTTTCTTCAC CAATCTTGAAATCAAAGCTTAATAAGTGGGCACTAGTTTCAAGGTTGATGCAGAAAGGGGTGCTTGCTAGCAATGATCAA CAGGAGAATATCAATGAGTTGGAAAAAGTGGATTTTGCACTTAGCAGCTTGATTATGGAGAATGTGAGCAAAGATGCTGA GGCTGAGAAGATTCAATCTGCACATAGAAGGCTAGAAGCTTTGGTTGTTGCTATCGAAAGGATTGAAAACGAATCAGAAT GCTTGTTTAAGCGCTTGATTAATACTAGAGTATCTTTTCTGAATATATTTTCTCCTTAAGAACTCAAGTGCCTTAGGGCC TTTTCCATATGTGCAAATAGAGTTGTTATTGTACATTCTGTTTCTTTCTCAAGTTTCCTTGAAGGATCTTTAACTTTCTG AAGCATACTGTACTTGCTTTGATATCTTTTTGAATGGTGGTCTCAAATTTTGTCATTTCAATGAAGGTCAGGTATTAAAC TATTCCAAGATTGAATTGGACAATTTGATCTCTAATTAAATAAAGCATCAGAGTGGCACAGGCGTAGCTATGTTTAGGTC AAGAGCAAGTTAAGGTAGAAATAGTAGATTCAAATTGTTGTAACGATTCACCATATTCTGAACATGAACACAATTGGCCT ATTACATTAAAGTCTTTTCTGCAAATAAAGAGCCACCGTAGTACCTACTTTTGTCCCATTTTTGTTCTTGTTTGCAAGAG TTAGTCACTTTCACAGTTTCACTCTCCCAATGGTTAAAGAATATGGA
CDS sequence (LotjaGi4g1v0137800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAAGGCAACAATGGCTACTTTTTCCCCAAAGCACTCAAGCAAGTATAGTGCTAGATCTATTAGTTTACCAACAAG ATCACACCCTAGCACAATTCAGATTGAAGAGGAGCTGATCAAGCTTAAATCATGGGAATCACCATCATCATCATCTACCT CAAAGGTTGAAACAATTTGTTATGGTCTTTCTGGCCTTATAGAGTTGTACAAGTGTATAGAAGATCTTCTCAAATTGCCA CTCACCCAACAAGCACTATTCCAGCACAAGAATGAGAAATGGATCAATGACTTGTTGGATTCCCCTTTGAGATTCTTGGA TCAATTGGGCAAAACAAGGGATTCAATTTTGTCAATGAAAGGAAGAGTTGAAGATCTTCAATCTGCACTCAGAAGGAGAA AGTTTGGGGATTTAGGAATTGAAAGCAATCTCTCTGCATATTGGAGCCTTAGGAGGAACATGAGAAAGGAATGCACAAAA TCTCTGCTTTTATTGAAGCAGATTGATGGGTCATTTGGAGCCTTTTTTCCTCTTGATCTTGATGACCACCTTTGTTCAAT TGTGAGAGTGTTAAGAGAAGCTAGTTTGATCACTAGCTCAATTTTTCAGTCACTTGTTGTGTTTGTTTCTTCACCAATCT TGAAATCAAAGCTTAATAAGTGGGCACTAGTTTCAAGGTTGATGCAGAAAGGGGTGCTTGCTAGCAATGATCAACAGGAG AATATCAATGAGTTGGAAAAAGTGGATTTTGCACTTAGCAGCTTGATTATGGAGAATGTGAGCAAAGATGCTGAGGCTGA GAAGATTCAATCTGCACATAGAAGGCTAGAAGCTTTGGTTGTTGCTATCGAAAGGATTGAAAACGAATCAGAATGCTTGT TTAAGCGCTTGATTAATACTAGAGTATCTTTTCTGAATATATTTTCTCCTTAA
Protein sequence (LotjaGi4g1v0137800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKATMATFSPKHSSKYSARSISLPTRSHPSTIQIEEELIKLKSWESPSSSSTSKVETICYGLSGLIELYKCIEDLLKLP LTQQALFQHKNEKWINDLLDSPLRFLDQLGKTRDSILSMKGRVEDLQSALRRRKFGDLGIESNLSAYWSLRRNMRKECTK SLLLLKQIDGSFGAFFPLDLDDHLCSIVRVLREASLITSSIFQSLVVFVSSPILKSKLNKWALVSRLMQKGVLASNDQQE NINELEKVDFALSSLIMENVSKDAEAEKIQSAHRRLEALVVAIERIENESECLFKRLINTRVSFLNIFSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 309 | 307 | 2.1E-132 | – | |
| PANTHER | 3 | 309 | 307 | 2.1E-132 | – | |
| Pfam | 62 | 307 | 246 | 5.8E-78 | ||
| Coils | 269 | 289 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0137800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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