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LotjaGi4g1v0137900.1

Overview

Field Value
Gene ID LotjaGi4g1v0137900
Transcript ID LotjaGi4g1v0137900.1
Lotus japonicus genome version Gifu v1.2
Description B3 domain-containing protein; TAIR: AT2G24670.1 B3 domain protein (DUF313); Swiss-Prot: sp|Q9SJ98|Y2467_ARATH B3 domain-containing protein At2g24670; TrEMBL-Plants: tr|K7LN71|K7LN71_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0137900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:20405221..20410219) extracted from Lotus japonicus Gifu genome v1.2.

ATTTAACCGCCATTTTCACAAAATAATTGGCTGAATATTATTCTACTATTTTCTCATTGCGCGCCTTCATCGAAATGTTT CAGCCCTCAATTTCCTTCACTGCTACTCAGATTTCCTTTACCAAAGCTAGAGCCTAGAGCAGATTGCATTCAGAAGAAGA GCACAAGAGCAGATTTCGTGTTTTTTCCGAACAGTTACGATAACAACTCTCACTCTCGCTTTCTTCACGGTACTGTATTT GGTACTTGTTTCTATTCTATTCTATTCTATACTGCATTTACCATATTTGTTTAGATCATTTATTCAATAATTAGCTCCAT TAAGCTCTTGTGTTAATTTTAGACTGATAGATTTCAGACAGCATATTGTAAATTTGTAATGCACTTACTTTAGAAATTCC AGTTATCATTGTAACTGTTACATCGATAGGGGCGTATGAGCAGGCTAGTTGCCTTTGATTTAAAGTGGACACTGGACACT ACCACTGAGAGTAAGAATTCTAGTTTTAGTTCTAATTTCTTTTGTTGCTGATGCTTTAGAAGGGTCAAAAAATAATTTCA CTCGGTGATATCTGAATTCCTAAATTTACAAAAGTAAGAAGGAAGAAGTTTTGAAATATGCCTCTTTATATCATATAGTT CCCTGAGCTTATATATGCATGTTCTGATTCTTAGTTTGAGTTTATATTGATGATGTGATTTAGATAATTGTGTGCAGGAA TGACCAAGGTGATGCTTGTTTCATATTAGTTCATGCTTGGGACAAAAAATAAATACACTAGAACACTTTACTGTTTGCAT CTTGGTTAGCTTTATCCCTTACTTCAAGTATTAAAAATTGTTGTGTATTGGTTACTGAGGGTAAGGTCCATGAAGTTTGA TGTGTTTAATTGCAATTTAGGCTCCATATATAAGCTTTTAGGGGGCCCTCAATACCCTTATATTTGTGTCAGCCACTAAT TAGACTCACTTGCTAGTTTAATCCCTGTGATGGATGGTTTCAAATGCACAAGTGAATCTAGTTAAAACTTAAATCGTGTG ACAAGAAGAATCTTTTTTATCTCACTAAGATAGTCCATTTAAGCTGTGATACAGAGTTAGCTACTACTATTGTGAGATTT TAACTTGTTATTTTTTTCATTCCATCAAAATTAGCTTCCTCTTGTACACTACTTTTGATGTCCATTTATCTCATAATATG CGATTCTTTTTGTTATATGATCATATCAATTTTTAAGTTGACTTAATGGCAGCAACTTTCCTGTCAGTTTTGCTTATGAT CGACAATCGCAACCTAGATGTATTGGAGATATTTTATTAGCTTCTATCTTAAATGTGTTCCTGTGCTGAAATTGCATGTG CTTAAATTATAGCCAACAACACTATTTTCAGACATGGCTTTTTTTCTAAGCAAACTGTTCTGATCAATTTATTCATTATA ATGCTAAAGAAGGGAACTAAATGATGTGATGATATGGTTCCATTATGAGTGTTTATGATATGTCTCAGCCATTTTTAGTT GTTCTTAGTGATTAACATTGAATTTTCCCCAATTGGGTATAGTGGATCATCTGTATTCCATTTTGTTTATTAGTATTTAG TAGTGTTTTTGTATTAATTTACTATTCTTACAAGTGCGTGAACCGTAAATGTCTTTGTGACACAACACATTTCTGATGGT CTGAAACTTCCAGAAATGGTGAAATGTAAAGCATTAAAATTGTGGCCGTTGAAATGGTAATTTAACCCTAAGCCGTCATC TTGTACTGTATAGCAGATGCAGTTGCCGTGCAAACCAAAGATGCCACTAATGGACACTAATGAGTGTAAACTGCACTATG TTGAACTGGAGGTCAGATTGCATCCTTTTAATTCTTCTTTATTATAGTTCGCATAGTTATTAAGTGATCTGCCCAATGTG TTTAAGGGATAAAGAGTCTACAACTCATCTTCTTTTCTCCTGTCCATTTGCTTGGAATGTCTGGATGTTTTGTTATAAAT GGTTAGGTCTGTCTACGGTCCTACCGAATGAGGGCGAAGCACACTTCCTACAACATATATTTCACTGCAGATCAGAGGCA GAAAGTGGGAACCTGGGTTATTTGGATTTCTGCAATTTGGACAATCTGGAACCATACGAATGAGAATTTTTAAAGAAGGC TTTGTTGATGTTGATAAAGCTATTGATATGGTCCAGTTCCGCTCTTGGAATTGGCTAAGAGGGAAGGTAAAGGCACTTCA GCTGCTCTCTATATGAATGGCAAACCCACCCATCTTGTATAATAGCTAATTAGCTATGCTATGAAGGCCTTCTGGTTTTG GTTCAGCAGCTATTCTCCATGGTTTCCTATTCCCTTGTTCGGGGTACCTGTGCTATAGTTCTGTTATGTGCATCTGATCT AGTTCTTTTGGGCTATCAAGATCTTGCTGCTGCTCCTTTTAGGCTGGCCCTTGTGCTGTTTCGTTCCTATCTGCTTCCTA TGGCTGTTATGTTTCTGTTTTTTCTGTTTCTGCCAGTTCTGGTTTTCTGTTTCTGTTCTGTCTGGTTCTGTTTTTTCCTG TTTTTCCGGTTTCTTCTCTTTGTACTATAAGGTTTTGAAGCACACCTAGTGCTTCTTATATATATAATTTTGCTTATCCA AAAAAAAAGGGACTGTTTAAGTTAGGACCTGAGATTATAACACATTTTAGCTAGGTGGCCCAAAATTTCTATAATTCTGA ATCTGATCTCACGAATCTTAAACACTTTTGGTCCACTTAGGATGAGGTTATTTAACCGTATGGAGAGTAAGTTAGATAGT CCTTGTTGTTAATCATTTTCAGTTTATCAAGTAATATTGACTAATAATGGTTAAAACAAGTCTGTTTAAACAACCAAGGA ATGGAAGTTAAAAGAAAGATTACATGTAAGAAATTTCCTCAAGTAACCAAGTCTGTTTGAGAAGAAAAGAAGAAAATTTT AGCACTGTCCTATTGCTTCTGAACTTGCGCAACTGCGCTTTGTTTGAAAATGGTCGCGTGATGAAATCGAGACACTTCTG CACAGCTCTAGTGCTTAAACAAGCTGTTAGAAAAGTGCTTTCTGCTTTATCAAGAGAAGTAGTTTGGATGGCCGAATTTA AGTTTTCTCAGAGACTTTCTTCTTATCACAGTCTATTCATGTGACACTTTTCAGTGGGTTTTTAATCATATTTCTTACTA TGCTTGTCTATTCTCAGCTTATTTGTTGTAAAATTCCACCTTTCTCATCTGGAATATCAGCATAAGCCTTATTGATGCAT ATGAGAATTCACAGTACAGTTTCCCCAATAGGTCATGGCTATGGACCACAAGAGTCAATGTGACATTGAAACTATATCTT CACCTGAAACCTTCAAGGGATTAGATACATGGGTATGTTCTCTTGATATTTATCATAATTTTGACCAATGTGCATGTTCA TGCTTTTATCCTTATTGTCATCAAATCATTTTTTTCAAGCTTCTTCATCCAAATAAAGCTGAGCATATGGTATTGCAGCA ACAAGTTTTTATTGCAGTTTGCAAACTGAGTTCTAGAACTATGATTTTATCTTTTCGATTATGATATTCTGATCGGAAAC ATTATTTACAAAATAGAAGCCAGAAATCCACCAAACGGTTATATTGTACATCGAATTTTGGGATTAAATTGAAATCCCTC CCTCTTACTTCCCGCGTGAACTTTATTTCATCGTACCAAAAACCAATCTAATCTTTCTTGATTCTTATTTTGTTACAATC TTTCTTGATTTGTAATCAATTTATGTTTACAACTCATTCCATCTTAACTTATTTAATGATTTCAACTATTTTAATTTTAG AATAAATCTTCAAAGATTACATTAAAGATTTCAACTGTGTTAATTTAAGAATGAATCTTTAAAAGATACATTTTAACGTT AACATTTCTGGCTATATATTAAGGTAAGAGCCACTGCTTCTTAAATTGACTCTCTGATCACACACACTTAGCAGCTTGTT TTGTTTCAATATCGATCATAATTCTCCATTTGCGCACTATCATCTCTTTCTTTCACCCTCCTTCCTCAATTTCTTTTCTT TCGGTGCTTTCTTCAATTCCCCTGTTCGTTCGATCATCATGAGGGACAAGAAAGAAGTATGGAAACTGGTGAAAAGTGTT TCAAACTATGAAACACGTCAAATGCTGTCTTCCAAACCCTTCAAGCCTGGCTTTCTTGACATGGTATTGTCAGAGGATTC AGAGCATGCAGCACAGTTTTACAGTGAAGAAGAATTGACTCAGATCAAGAAATTGAAATCACAGCTTGGATTGGGAGGAG GAACTTCAAAGACTGTAGAGAAAAATCAGAATCAGAGGGTGATCAGAGAAAGTGATGATCAAGAAACGTACTCACATTCA CATTCACATTCACAGGTTGAAGCGACAAAGGCAAAGAATAATCTGAGGGTGAATAGAAAAAGGCCCAGAATTCCAATTCA AGAAATGGTTCTTGATGATGAAGAAGAGGATGAAGCAGTACTCGCCAAACCCGCAAAGAAAAAATCAAGAAAGAAGATTG CTTCAGAGAATGTGCAAGAGTTGCCTTTAGAGATCAGGAACCGAATTGCAGAGTTGAATGGTACTAATACTCAATTTCTC ATGAGCAAGAAACTCTACAACACCGACGTCAAGGCGAATAACAACCGTCTGTCTATGCCGGAAAATAGTATCAAGTGTGA GTTCCTCACTGAAGCTGAGAAAAAATGCACTGCTGAACAGCAAGGTGTGGATGTGACTGTGTTGGATCCATGTCTCAGAG AACACTCTTTGGTCTTGAAGAAGTGGAAGATGAACAGTGTCTTCGTCTACAATTTGATCAAGAATTGGAACAAGGTTGTA TCTGAGAATCATTTCCAAAAAGAACATCAACTCCAAATTTGGTCTTTTAGGGTCAATGCCAAACTCTACTTTGTACTCAA CAAAGTCTGAAATGTTAGATTAGGAAATTTCAATTGTCG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0137900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGGACAAGAAAGAAGTATGGAAACTGGTGAAAAGTGTTTCAAACTATGAAACACGTCAAATGCTGTCTTCCAAACC CTTCAAGCCTGGCTTTCTTGACATGGTATTGTCAGAGGATTCAGAGCATGCAGCACAGTTTTACAGTGAAGAAGAATTGA CTCAGATCAAGAAATTGAAATCACAGCTTGGATTGGGAGGAGGAACTTCAAAGACTGTAGAGAAAAATCAGAATCAGAGG GTGATCAGAGAAAGTGATGATCAAGAAACGTACTCACATTCACATTCACATTCACAGGTTGAAGCGACAAAGGCAAAGAA TAATCTGAGGGTGAATAGAAAAAGGCCCAGAATTCCAATTCAAGAAATGGTTCTTGATGATGAAGAAGAGGATGAAGCAG TACTCGCCAAACCCGCAAAGAAAAAATCAAGAAAGAAGATTGCTTCAGAGAATGTGCAAGAGTTGCCTTTAGAGATCAGG AACCGAATTGCAGAGTTGAATGGTACTAATACTCAATTTCTCATGAGCAAGAAACTCTACAACACCGACGTCAAGGCGAA TAACAACCGTCTGTCTATGCCGGAAAATAGTATCAAGTGTGAGTTCCTCACTGAAGCTGAGAAAAAATGCACTGCTGAAC AGCAAGGTGTGGATGTGACTGTGTTGGATCCATGTCTCAGAGAACACTCTTTGGTCTTGAAGAAGTGGAAGATGAACAGT GTCTTCGTCTACAATTTGATCAAGAATTGGAACAAGGTTGTATCTGAGAATCATTTCCAAAAAGAACATCAACTCCAAAT TTGGTCTTTTAGGGTCAATGCCAAACTCTACTTTGTACTCAACAAAGTCTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0137900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRDKKEVWKLVKSVSNYETRQMLSSKPFKPGFLDMVLSEDSEHAAQFYSEEELTQIKKLKSQLGLGGGTSKTVEKNQNQR VIRESDDQETYSHSHSHSQVEATKAKNNLRVNRKRPRIPIQEMVLDDEEEDEAVLAKPAKKKSRKKIASENVQELPLEIR NRIAELNGTNTQFLMSKKLYNTDVKANNNRLSMPENSIKCEFLTEAEKKCTAEQQGVDVTVLDPCLREHSLVLKKWKMNS VFVYNLIKNWNKVVSENHFQKEHQLQIWSFRVNAKLYFVLNKV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31541
37 283 247 2.2E-58 –
PANTHER
PTHR31541:SF33
37 283 247 2.2E-58 –
MobiDBLite
mobidb-lite
83 104 22 - –
Pfam
PF03754
161 255 95 4.3E-20
IPR005508
Gene3D
G3DSA:2.40.330.10
164 283 120 2.9E-14
IPR015300
CDD
cd10017
173 282 110 2.82449E-7
IPR003340
SUPERFAMILY
SSF101936
175 280 106 8.04E-9
IPR015300

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0137900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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