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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0144300 |
| Transcript ID | LotjaGi4g1v0144300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycogen synthase 1; TAIR: AT4G19460.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp|Q59002|Y1607_METJA Uncharacterized glycosyltransferase MJ1607; TrEMBL-Plants: tr|I1MMI1|I1MMI1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0144300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:22957189..22958670) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCCACATCTTCAGAACTCCCTGAGGAAATGGCCTTCAACAATAGCAGGTCCAGAAGATCACCCAATTCTTCTTCCCC TTCAAATTTTTACTTCTGCACTACCCTTTTCTTCATTGTCCTCTTCACCATACCAGTACTTTTCCTCCTCCACGCCTCCA CTACATCCTCCATATGCATCACCACCCTTGCCTCCCAAGCAAAACCTTGGTCTGGTGATCTTCGTTTAGCTAAATTTTCA TGGAACCGCCTCCAATTTTCTCAAAATAAACCACCTCCAAAACCTCTCAAAATTGCTGTTTTCTCCAGAAAATGGCCTAT TGGCACCACCCCTGGTGGAATGGAGCGCCATGCCTACACCCTCCACACCGCCTTAGCTCACCGCGGCCACAAAGTTCATG TCTTCACATCGCCCCAAGAAACTGCACCTTCTTCTTCTTCTTCGCCTTATATCCATTTCCATGAAGGCGAGCCGGGGAAA TGGCGCTACAACAAGGCATGGGAACAGTTTGTGGAGGAAAACAAGGGAGAACCATTTGATGTTGTTCACTCAGAAAGTGT AGCTCTTCCTCACTGGCTAGCTCGCAACCTTTCAAACCTTGCAGTGTCTTGGCATGGAATAGCCCTTGAGAGCTTGCAAT CGAGTATTTTCCAGGACTTAGCTCGTGGACCTGATGAACCCATGTCCCCTCTTTTCAACCAGAGCATACAGGGTGTTGTC CCTAAGGTGCTGAATGAGATAAGATTCTTCAGAAACTATGCTCATCATGTTGCTATTAGTGATAGCTGTGGTGAGATGCT AAGAGATGTGTACCAGATTCCTAGCAGAAGAGTCCATGTAATTATTAATGGGGTTGATGGGGAAGATTTCAGAGAAGATG TTTCATTGGGAAGGGAATTCAGAACCAAAATTGGCATTCCAAGAAATGCAAGTTTGGTACTTGGTGTAGCTGGAAGGTTA GTGAAGGACAAAGGCCATCCTCTGCTTCATGAAGCATTCTCAAGGCTAATAACAAAGCACCCCAATGTGTACTTGATCGT TGCGGGTTCTGGACCGTGGGGGAACCGGTACAAGGATTTAGGAAGCCAGGTTCTTGTTCTAGGATCAATGAGTCCTTCCA AGTTAAGAGCATTTTATAATGCTGTTGACATTTTTGTCAATCCGACACTACGACCACAAGGGCTTGATCTTACTTTGATG GAAGCAATGATGAGTGGGAAGCCTCTTTTGGCGTCAAGATTTCCAAGCATTAAAGGTACTATAGTGGTTGATGATGAATA TGGCTTCATGTTCTCTCCAAATGTGGAGTCCCTGTTGGAGGCGCTCGAAGCGGTGGTGAAGGAAGGACCACAGAGGCTAG CAAGGAGAGGAAAGGCATGCCGGGAATTCGCTGCCTCAATGTTCACAGCAAAAAAGATGGCATTAGCATATGAGAGGTTA TTTCTATGTATAAAAGATCATACATTTTGTGCCTACCCTTGA
CDS sequence (LotjaGi4g1v0144300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCACATCTTCAGAACTCCCTGAGGAAATGGCCTTCAACAATAGCAGGTCCAGAAGATCACCCAATTCTTCTTCCCC TTCAAATTTTTACTTCTGCACTACCCTTTTCTTCATTGTCCTCTTCACCATACCAGTACTTTTCCTCCTCCACGCCTCCA CTACATCCTCCATATGCATCACCACCCTTGCCTCCCAAGCAAAACCTTGGTCTGGTGATCTTCGTTTAGCTAAATTTTCA TGGAACCGCCTCCAATTTTCTCAAAATAAACCACCTCCAAAACCTCTCAAAATTGCTGTTTTCTCCAGAAAATGGCCTAT TGGCACCACCCCTGGTGGAATGGAGCGCCATGCCTACACCCTCCACACCGCCTTAGCTCACCGCGGCCACAAAGTTCATG TCTTCACATCGCCCCAAGAAACTGCACCTTCTTCTTCTTCTTCGCCTTATATCCATTTCCATGAAGGCGAGCCGGGGAAA TGGCGCTACAACAAGGCATGGGAACAGTTTGTGGAGGAAAACAAGGGAGAACCATTTGATGTTGTTCACTCAGAAAGTGT AGCTCTTCCTCACTGGCTAGCTCGCAACCTTTCAAACCTTGCAGTGTCTTGGCATGGAATAGCCCTTGAGAGCTTGCAAT CGAGTATTTTCCAGGACTTAGCTCGTGGACCTGATGAACCCATGTCCCCTCTTTTCAACCAGAGCATACAGGGTGTTGTC CCTAAGGTGCTGAATGAGATAAGATTCTTCAGAAACTATGCTCATCATGTTGCTATTAGTGATAGCTGTGGTGAGATGCT AAGAGATGTGTACCAGATTCCTAGCAGAAGAGTCCATGTAATTATTAATGGGGTTGATGGGGAAGATTTCAGAGAAGATG TTTCATTGGGAAGGGAATTCAGAACCAAAATTGGCATTCCAAGAAATGCAAGTTTGGTACTTGGTGTAGCTGGAAGGTTA GTGAAGGACAAAGGCCATCCTCTGCTTCATGAAGCATTCTCAAGGCTAATAACAAAGCACCCCAATGTGTACTTGATCGT TGCGGGTTCTGGACCGTGGGGGAACCGGTACAAGGATTTAGGAAGCCAGGTTCTTGTTCTAGGATCAATGAGTCCTTCCA AGTTAAGAGCATTTTATAATGCTGTTGACATTTTTGTCAATCCGACACTACGACCACAAGGGCTTGATCTTACTTTGATG GAAGCAATGATGAGTGGGAAGCCTCTTTTGGCGTCAAGATTTCCAAGCATTAAAGGTACTATAGTGGTTGATGATGAATA TGGCTTCATGTTCTCTCCAAATGTGGAGTCCCTGTTGGAGGCGCTCGAAGCGGTGGTGAAGGAAGGACCACAGAGGCTAG CAAGGAGAGGAAAGGCATGCCGGGAATTCGCTGCCTCAATGTTCACAGCAAAAAAGATGGCATTAGCATATGAGAGGTTA TTTCTATGTATAAAAGATCATACATTTTGTGCCTACCCTTGA
Protein sequence (LotjaGi4g1v0144300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPTSSELPEEMAFNNSRSRRSPNSSSPSNFYFCTTLFFIVLFTIPVLFLLHASTTSSICITTLASQAKPWSGDLRLAKFS WNRLQFSQNKPPPKPLKIAVFSRKWPIGTTPGGMERHAYTLHTALAHRGHKVHVFTSPQETAPSSSSSPYIHFHEGEPGK WRYNKAWEQFVEENKGEPFDVVHSESVALPHWLARNLSNLAVSWHGIALESLQSSIFQDLARGPDEPMSPLFNQSIQGVV PKVLNEIRFFRNYAHHVAISDSCGEMLRDVYQIPSRRVHVIINGVDGEDFREDVSLGREFRTKIGIPRNASLVLGVAGRL VKDKGHPLLHEAFSRLITKHPNVYLIVAGSGPWGNRYKDLGSQVLVLGSMSPSKLRAFYNAVDIFVNPTLRPQGLDLTLM EAMMSGKPLLASRFPSIKGTIVVDDEYGFMFSPNVESLLEALEAVVKEGPQRLARRGKACREFAASMFTAKKMALAYERL FLCIKDHTFCAYP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 11 | 493 | 483 | 4.7E-275 | – | |
| PANTHER | 11 | 493 | 483 | 4.7E-275 | – | |
| TMHMM | 28 | 50 | 23 | - | – | |
| Phobius | 29 | 50 | 22 | - | – | |
| Phobius | 51 | 493 | 443 | - | – | |
| Gene3D | 96 | 294 | 199 | 3.5E-22 | – | |
| CDD | 97 | 481 | 385 | 7.68412E-66 | – | |
| SUPERFAMILY | 110 | 481 | 372 | 3.87E-61 | – | |
| Pfam | 111 | 286 | 176 | 3.5E-20 | ||
| Gene3D | 295 | 483 | 189 | 1.8E-34 | – | |
| Pfam | 312 | 458 | 147 | 6.6E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0144300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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