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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0145800 |
| Transcript ID | LotjaGi4g1v0145800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 45B; TAIR: AT1G32127.1 plant viral-response family protein; Swiss-Prot: sp|Q3T130|TM45B_BOVIN Transmembrane protein 45B; TrEMBL-Plants: tr|I1MMK3|I1MMK3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0145800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:23543179..23547461) extracted from Lotus japonicus Gifu genome v1.2.
TGCCACATCAGTGCATCACCCTCGTGGCGTGGCAACACCATGTACTGTGCACTTGGCATAGTACCTCTGCTTATTACATT CAGACGATGCTTATGAATTTTGAGAACATAGCTTTCTTGAATTGCTGAATCATTTGGCAAACAGATAAAGAATGGAGAAA GGACTCTGATTTCTGCATCCAAACCAGTAAGTCAACCTTCACTCATTTTGCTATAAATAAACTATTATACAGTATATATA TATATATATATATAGTATGTAAAGTAAGTAAAGCAAATCCTGTCATCTTTCATCATTATTTTCTTTCTTTACAATCCCAT TATTCCCATTGGAAAGCACTTAATTATTTACAATATCCCATAAAAAAACTGAAAAGTTTCGAGCTTTCTTGCTCACGTGC TCAATCTGTATCTATATGCAAGACAAGATCATGGAAATGTACTAGAGATTTTGTTGGGTTTGTGAGTATGAGAAGTTTTT TCCAGTTATAGGTTGGTCTCCCTGATTTTCTTCTTTTTACCAAATTTACAGTTCTTGGCTTGTGGGTTTTTCTTCTGTTC ATCTGCTTTTGTTAATTTAGACCTCAAAACTCGATTTTTGTTAATTTGAAGGGAATCAACCTCTAGAAGCAAAATTGGAC TAGAATTGATTTATTATTCTTTCTTTGTTTGTTTCTTGGGAAAACTCAAGTGATATGGAGGAAATTTTTGGAAGGATGCC TTATTGACTGGGATTGTGATAATGAAAGCTTTTTTTGACAATTTGACCTATAAGGAATTCTACACTAGATAGAAAGTTTT CCTTTGCTGTTTATGGTAGTAAAGGATACCTTTGCTGTTTGAAGTTTGAACTCTCATTCCTACTACAAATGATATTGAAA ATGACTGTGCTCTTTTTGCAGGATTGGTTGGTAGGAAAATTCAGAAGGTGGGATCATCTTAAGAATCATTTGGGGGTTTC AGTTGAAAGAGTGCTGTAGCCTGGAAAGATTTACATAGAGAGTGGTATAAGTAAATTAGAAATTAAGATGGGATCTTTCA TAGGTCATATTTTGCCAGGAACCTTGTTTCTTCTAGTTGGGGCATGGCATATATGGGCTTCTGTGGTGAGATATGTATCA GATCCCAAGACATTCCAGGTTCGGGTTTGGAATCCTGTGCTTGGGTTTGATGGGAGGATCAAGCACTTGGAGCTCTATGT TATTTCAATCGGCGCTTTCATTGACTTGTGCATCGAGCTCTTAGTTGCAACCCAACTCAGGTTTTTTGTAGGTGGAGTCT TGAATTCTACTTACTTGAATAACTTTGAGCACTCGGGAATGCTTCTAATGTTTCTTATCTTCGGTGTTGTTTCCCTGCTT TCAGAAAGGACAAGGTTAGTTGCTATGGTTGCTCTTCTTATTACTATGTTCCTAGCCTTTTTCTTGTAATAAAAGCCAAT AAGTTGTGCCGCTACAAATTTCAAGTTGTTGAGATCTATCCTTTAAAAGTTAAGTAATGTTTTCTTTTAATCAGGCCGGT TCATTTCCCTTAATCCATGGAAATCCTTATTTATTTTCTATATTCTTTCTCTAATCTAGATTTTTTGGGATGCTGCTTGA TTCTAATCTTAATTTTCCATTTAATTTATTTTCTCTGATTTACTAAGGAAATTAAACAAATGATAAAATAGGGTGTGGAC GGTTGTAATTAAGAATAGTAGATATTGATGGTAATTACTAATTAGTGATAGGATTACACAGCACTAACTTTTTTTTTCTG TTATTCCTAAGTTTTTCTGTATCTGCTTGTTTGCTGAGCAAGCACATTTTAATAGGGGCGGAAAAATACAAGCCTAAAAT ATATGGTTAGTATAATTTGCGTCAAAATGAAGCTCTAGTGTTACTGATATTTTTTATGGTGACACCATTTTCTGACAAAT GGAAATGGGTTTTAAGTGTGCAGTTTGTTGAGAAAAAGGATTCTAATTGAATCAGTAAATAAATTAGTAGAGATATTGAT AACAATGAAAACCCATGAGTCCTGTAGTCCATGCTTCTATAAATCCATGGGGTGAGCTATTTAAATCTTAATGTGAAACT TGTTGCATTGCAAATATTCTGTGGACCATACATGCTCTCCCATAGCTCTGCTTCTGCTTCCTTTGCATCCCCATGATTTA ATTCTTCATCTGTGAGTTCTCTAGCTTGTTTGTCTTCTAGATACATCAGTTATTAAGCCACCTTAATTTCTCTCATGTAT TGTAGCATGAGAGTGATGTTGCTGTCCTAAAGATGCTTAACCTTCATCGTTGGCAAGATATGCATTGGATGAAGCTTCCA TAGACAGCAGAATAAGAAGCAAAAAGTTTCATATCTATGTGAGAGTGCAGTTGTGTTTGGTTTTCTATATGTTAATCACT GGTTCTCTTGATCAATCTGTTATTTTAGTTACTCAGGGGTACTTATTTGATCTGGCTGTACATAGTTCCATGATCATCCT TTTGAGCAGTTTTTGGCAATGAGTGCTACTGCTAACTTCTCTTTCCAATAACACTGCCACTATCCTTGTCCTTAACCTAC TGCAAGTGTTATTCTACATGCTATTCTGGAAAAAATATAAGATGCTATAACTATGGAAAATTGTAAAGATGTTTGTGGTG ATAAAATCCATGCTCTTTCCCTGAATTCATGTTATTTATTTGTCCTCATGGAATTGTCTATGCTCTGGACAGCTATTAAT CCTTGGGTTGCAACAGATATAATATTTAATTGTCTATGAGGAAAGTGATGCATAATCCATGCACGTTCTGGTAGCTAGTT CTCAAATGTCCGATACTCCCTAGTCTGTTAATTTTCCACATAAAAAGGTTTTCCCAACTTATTGGCTAAACTGATAGTTC AAGAAAACATTTTCTGTATTCATTTCCTAGTTTTGCATAAATACAAGAAAACATTCTTTAATTATCAATAAAAACATGAA ATGAAAAACAGATCAGGCTTAATTTTCTGTATACACTTCCTTTTTCTCAATCTCTAGTTGTAGAATATATTTATTTCTCA GAACATAATCATTATTTTTCATAGGTTAAGATGCCTTATCAAGTTTACTATTTAATTGCAAATTACTATTCAAATATCTT AACTTATGTCTTTATTTGTCCATAAATCATGACATTGGAAGATATTGTTAAAAGCAACCTCATGATCAATAATATGTCAC AAAGTTTAGTTTCTGATTGAGCGCAATGACATTAGTTATCCATGTACCCGACTTCGCTTGTGGAATAAGTCTATTGTTAT TGTTGTTGTTGATATTTGTCTCCTCTAATTTGATTTTCTTATGTAGATATCTTCCCTTGCCGGGTGGAGCTCTATGCTTG ATTGCTGCCACAGCATTCTGTGCAGAGTATCTTCTCTTCTACTTTCACTCGACAACACACAAAGGCCTTGAAGGCTATTA CCATGTCCTCCTCTCCTTCCTGATTGGGCTTTGTATTTTATCTTCAATTGCTGGAGCACTTTTACCAACCAGCTTCCCAG TTGATTTATGTTGTGGCATTTCCATAGCCCTGCAAGGAATCTGGTTCTATCAGACTGCATTTGTTCTCTATGGCCCCATG CTTCCAACTGGTTGTAGCCTCAAGGACAGTAATATCACATGTCATTCCAAAGAGAGCGAGCTTCGAGGTGAATTGCTTGC TAATGTTCAGGTCTTTGTTGCAGTCTTTGCTGTTCTTGTAGGAACTTTAGCATCCTATGGGTTTGCAGCTTCAAGATATG GGACTTTTGAAGAGCATTCTCTGGATTCAGACTTGATTAGATCAAGACCAAAGTAGGGTATGATGTTATGTTTCAGTTCA TTTTTCTAGGGGGCCTTGTTTCTTGTAAAATGTCTGTAAATTGAAGTAAACAAGAGCTCGTTTGGATACAGACTTATTGG AGCTTATTTACTAGAAAAAGCTCTAGATAAGCTCCATTAAGTGCTCTTTGGTTTTCATCCAAACGGGTTGCAAGTCTATT AGTGTGGTGTCATGACTTTTGAAATTTAATATAAAGTACGCAAGGAAGTTATTATTTTAAATGAGCAAGTAAGTAGTAAC TATGCTTTTCCAATTTTTATTATCTTTATCGTAATCAACAACAAACTTTTCTATGAATACATACAGCACATAATTCATTA GCCTAATGAAAGAACTAGGTGCATTTGTTAGCTTACGCAGCATATCCAACCATTTTTACAATCCATTATGAATCAAAGTT TTATATAGAAGTGTGCATTGAGGTTCAACTTGGTTTATGTCGC
CDS sequence (LotjaGi4g1v0145800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATCTTTCATAGGTCATATTTTGCCAGGAACCTTGTTTCTTCTAGTTGGGGCATGGCATATATGGGCTTCTGTGGT GAGATATGTATCAGATCCCAAGACATTCCAGGTTCGGGTTTGGAATCCTGTGCTTGGGTTTGATGGGAGGATCAAGCACT TGGAGCTCTATGTTATTTCAATCGGCGCTTTCATTGACTTGTGCATCGAGCTCTTAGTTGCAACCCAACTCAGGTTTTTT GTAGGTGGAGTCTTGAATTCTACTTACTTGAATAACTTTGAGCACTCGGGAATGCTTCTAATGTTTCTTATCTTCGGTGT TGTTTCCCTGCTTTCAGAAAGGACAAGATATCTTCCCTTGCCGGGTGGAGCTCTATGCTTGATTGCTGCCACAGCATTCT GTGCAGAGTATCTTCTCTTCTACTTTCACTCGACAACACACAAAGGCCTTGAAGGCTATTACCATGTCCTCCTCTCCTTC CTGATTGGGCTTTGTATTTTATCTTCAATTGCTGGAGCACTTTTACCAACCAGCTTCCCAGTTGATTTATGTTGTGGCAT TTCCATAGCCCTGCAAGGAATCTGGTTCTATCAGACTGCATTTGTTCTCTATGGCCCCATGCTTCCAACTGGTTGTAGCC TCAAGGACAGTAATATCACATGTCATTCCAAAGAGAGCGAGCTTCGAGGTGAATTGCTTGCTAATGTTCAGGTCTTTGTT GCAGTCTTTGCTGTTCTTGTAGGAACTTTAGCATCCTATGGGTTTGCAGCTTCAAGATATGGGACTTTTGAAGAGCATTC TCTGGATTCAGACTTGATTAGATCAAGACCAAAGTAG
Protein sequence (LotjaGi4g1v0145800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSFIGHILPGTLFLLVGAWHIWASVVRYVSDPKTFQVRVWNPVLGFDGRIKHLELYVISIGAFIDLCIELLVATQLRFF VGGVLNSTYLNNFEHSGMLLMFLIFGVVSLLSERTRYLPLPGGALCLIAATAFCAEYLLFYFHSTTHKGLEGYYHVLLSF LIGLCILSSIAGALLPTSFPVDLCCGISIALQGIWFYQTAFVLYGPMLPTGCSLKDSNITCHSKESELRGELLANVQVFV AVFAVLVGTLASYGFAASRYGTFEEHSLDSDLIRSRPK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 266 | 266 | 3.9E-160 | – | |
| PANTHER | 1 | 266 | 266 | 3.9E-160 | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| Phobius | 31 | 55 | 25 | - | – | |
| Phobius | 56 | 75 | 20 | - | – | |
| TMHMM | 58 | 80 | 23 | - | – | |
| Phobius | 76 | 94 | 19 | - | – | |
| TMHMM | 95 | 112 | 18 | - | – | |
| Phobius | 95 | 112 | 18 | - | – | |
| Phobius | 113 | 123 | 11 | - | – | |
| TMHMM | 117 | 139 | 23 | - | – | |
| Pfam | 123 | 253 | 131 | 4.2E-40 | ||
| Phobius | 124 | 142 | 19 | - | – | |
| Phobius | 143 | 153 | 11 | - | – | |
| Phobius | 154 | 176 | 23 | - | – | |
| TMHMM | 154 | 176 | 23 | - | – | |
| Phobius | 177 | 182 | 6 | - | – | |
| Phobius | 183 | 204 | 22 | - | – | |
| TMHMM | 183 | 205 | 23 | - | – | |
| Phobius | 205 | 231 | 27 | - | – | |
| Phobius | 232 | 256 | 25 | - | – | |
| TMHMM | 233 | 255 | 23 | - | – | |
| Phobius | 257 | 278 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0145800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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