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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0146100 |
| Transcript ID | LotjaGi4g1v0146100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|K7LAQ1|K7LAQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0146100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:23602293..23603738) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAGTCTTCAGTGTTGACGGATGAACACGAACATAAATTTTACTAAACCCTAAAGTTGGTCAAATTTCTCAGATATTG ATTGTTGATTTATCATGCCAATGGCTGACAGGATTAGCGTGTTGCCAAGTGAAGTTCTCTGTCACATTCTCTCGTTTCTT CCAACTGAGGATGTTGTTGCAACTACTGTTATTTCTAAGAGGTGGAGATCATTATGGCTTTTAGTCCCAACCCTCGACTT CGACTATCAAAGATACATTTCATCCAACAACAACAGATCACAATCTTCTTTTGTGCGCTTCGTATACGCAACCATTCTCG GAGGATCATGTTTTCCGCAACCCATCAAAACCTTTCACCTCATATGTGACTCTTCAATTTCTGATACCACCATTTGGTTA AACGCAGCAATGCAGCAACGCCAAGTTCAGAACCTTGAAATCGAGTTTCGCAGTAAACAACACCGGGTTCCCGGTACAAT CCCGTTTAGCATTTTCAGCTCTACAACTCTTGTTGTTCTTAAGTTGCATTCGGTGCGTTTTCGTGCTTTTCCTTCTTCTG TTGACCTTCCCTCACTCAAAGCCCTACATTTGTCCAATGTTGCCTTTAAAAAGGCTCAACTTTTTTTTGAACTTCTTCAT GGGTGTCCCATTCTTGAAAATTTGGAAGCAAATGGTGTACTATGTTTTTTCTGTACATTTGAGGAGGACAGGCTTATAAG TTTGCCAAAGTTGGTTGGAGCGGATCTTTCTGACATGATAAATCTTCCTATTGCTATGAAAGTATTTTCTAATGTAGAGT TTCTACGCCTAGAAAAGGTTTGTATGGAAAGGAATTTGGTTTGTTATTTTTTTTTTTTATAGAAATTGTTACCATATTTC TAATAATTTATCTTTCTAACTCTTGCAGTGGTACTGTGATATAAGTATAACCATTTCTGTGTTTCCAAATTTAATGCATT TGGAGCTCAAGTTGGGAGGCTCTATTGACTGGAATTTGTTGCTTGATATGCTCAATCATTGCCCTCAACTTCAAACTTTT GTGCTTAACTCAGACCATGCTTCCGAGGCTTGGCCAACCCGACATGATGTTCCTGAATGCTTTTTTTCACAGCTCAAGGA GTGTTGTCTTACAAACTATACAGGTAAGGAATGTCAGATGAGATTTGCAAAGTATGTTTTGCAAAATTCAATGTCGTTAC ACACCATGTCAATTTGTTGTCTGCCTAATGAAAGTCATTTCAAAAAGCTTGCAATGATAGTAGAATTAACCAAATGCCCA AGGAGCTCTACATCCTGTGAACTTTTATTTGAGTAATTGATATGTTAGTTAGTAGTTGGAAATTATTCTTGGACCACTAC AATATTTTAATTAATTCTAAGTATTATGTTCAGCTGGTTTTGGTGCTTTTGAAGGACATAAACTGTGTGTCATTGTTGGT ACATGG
CDS sequence (LotjaGi4g1v0146100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAATGGCTGACAGGATTAGCGTGTTGCCAAGTGAAGTTCTCTGTCACATTCTCTCGTTTCTTCCAACTGAGGATGT TGTTGCAACTACTGTTATTTCTAAGAGGTGGAGATCATTATGGCTTTTAGTCCCAACCCTCGACTTCGACTATCAAAGAT ACATTTCATCCAACAACAACAGATCACAATCTTCTTTTGTGCGCTTCGTATACGCAACCATTCTCGGAGGATCATGTTTT CCGCAACCCATCAAAACCTTTCACCTCATATGTGACTCTTCAATTTCTGATACCACCATTTGGTTAAACGCAGCAATGCA GCAACGCCAAGTTCAGAACCTTGAAATCGAGTTTCGCAGTAAACAACACCGGGTTCCCGGTACAATCCCGTTTAGCATTT TCAGCTCTACAACTCTTGTTGTTCTTAAGTTGCATTCGGTGCGTTTTCGTGCTTTTCCTTCTTCTGTTGACCTTCCCTCA CTCAAAGCCCTACATTTGTCCAATGTTGCCTTTAAAAAGGCTCAACTTTTTTTTGAACTTCTTCATGGGTGTCCCATTCT TGAAAATTTGGAAGCAAATGGTGTACTATGTTTTTTCTGTACATTTGAGGAGGACAGGCTTATAAGTTTGCCAAAGTTGG TTGGAGCGGATCTTTCTGACATGATAAATCTTCCTATTGCTATGAAAGTATTTTCTAATGTAGAGTTTCTACGCCTAGAA AAGTGGTACTGTGATATAAGTATAACCATTTCTGTGTTTCCAAATTTAATGCATTTGGAGCTCAAGTTGGGAGGCTCTAT TGACTGGAATTTGTTGCTTGATATGCTCAATCATTGCCCTCAACTTCAAACTTTTGTGCTTAACTCAGACCATGCTTCCG AGGCTTGGCCAACCCGACATGATGTTCCTGAATGCTTTTTTTCACAGCTCAAGGAGTGTTGTCTTACAAACTATACAGGT AAGGAATGTCAGATGAGATTTGCAAAGTATGTTTTGCAAAATTCAATGTCGTTACACACCATGTCAATTTGTTGTCTGCC TAATGAAAGTCATTTCAAAAAGCTTGCAATGATAGTAGAATTAACCAAATGCCCAAGGAGCTCTACATCCTGTGAACTTT TATTTGAGTAA
Protein sequence (LotjaGi4g1v0146100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPMADRISVLPSEVLCHILSFLPTEDVVATTVISKRWRSLWLLVPTLDFDYQRYISSNNNRSQSSFVRFVYATILGGSCF PQPIKTFHLICDSSISDTTIWLNAAMQQRQVQNLEIEFRSKQHRVPGTIPFSIFSSTTLVVLKLHSVRFRAFPSSVDLPS LKALHLSNVAFKKAQLFFELLHGCPILENLEANGVLCFFCTFEEDRLISLPKLVGADLSDMINLPIAMKVFSNVEFLRLE KWYCDISITISVFPNLMHLELKLGGSIDWNLLLDMLNHCPQLQTFVLNSDHASEAWPTRHDVPECFFSQLKECCLTNYTG KECQMRFAKYVLQNSMSLHTMSICCLPNESHFKKLAMIVELTKCPRSSTSCELLFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 4 | 54 | 51 | 12.014 | ||
| PANTHER | 4 | 373 | 370 | 1.7E-79 | – | |
| PANTHER | 4 | 373 | 370 | 1.7E-79 | – | |
| Gene3D | 4 | 221 | 218 | 4.6E-21 | ||
| SUPERFAMILY | 5 | 62 | 58 | 4.06E-14 | ||
| Pfam | 7 | 41 | 35 | 1.1E-8 | ||
| SMART | 10 | 51 | 42 | 1.5E-4 | ||
| SUPERFAMILY | 94 | 321 | 228 | 1.65E-9 | – | |
| Pfam | 300 | 343 | 44 | 9.0E-12 | ||
| SMART | 304 | 376 | 73 | 0.0027 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0146100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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