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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0146600 |
| Transcript ID | LotjaGi4g1v0146600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT2G21237.1 transmembrane protein; Swiss-Prot: sp|D1Z6B1|UTP25_SORMK U3 small nucleolar RNA-associated protein 25; TrEMBL-Plants: tr|A0A0L9URN7|A0A0L9URN7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0146600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:23655170..23658374) extracted from Lotus japonicus Gifu genome v1.2.
GAACAAAGTTCACCAGCTTGCACCCTCGAAAGTTTCGTTAACCCAGCTGTGATTTGCACGGTGTCAACCAGCAGTTAATT CCTCTGTCACCTTTCACTCACCATTCTTAAACACCTCTCTTCTCACTCATCTCCCCATTAACTCTCCGATTTTGTTCTAG CTAACATCTCTATAATTTCTTCTTTATTTTCATCCCAAAATCACTCACTACACCACCACCTTGATGAAGCAAGCCACTGT TGAAGTTGATGGTGGCCAAGAGCCTGCTTCATCATCTTCTGCTGTACAAGGCTTGAAAATTTACCCACCCAAAGAGTCTA GTTATGATGACTATGAAGGAATAGGAGAGAAACCATCAAGGTTTGAGGTTTGGGGATGGTATCTCTATGAGTTTTGCTCC TACTTTGTTCAGACTGTTATCATCCCTGTTCTGTTTCCTCTCATAATCAGTCAGCTACAGCAGCTTCATATAGACCCAGT TCAGGAGTGGCACATCAACCACCCTGGCATGACTTGTGGAGAAAAGCAAATTCAACTGTAAGTACATGCTTTCTTGTTTC CTTTTTGTTCATAATTTGGGTTGTTTAACTTTTTATTAGTATATTCATTGGGACCATATGTGATTCCTCTGTGTATTCTA TGCTGCAGCATTTGCATGAATTTTTTTAAAATTAGTTTATGTGTTTTGGTGATTCAAGAAAGTTTGAATGGCCATGAGTT TGTTGAAAGTTGGTAGAAAAATGCTGGAGGACTATTTCCGATACAATCTCTCATTATAGTTAAAATATACACGGACTTTA CTAAATATTGAGTAGTATTCACTCAATCTTAGAAGTCAGTTTTAGCTTGTTTGAAGTATGACTACTAGTTTTGTATTCTT CTCAATCAATTTTAAGATTCAAACATTACAAACATAAACTTCTCATGAGAATTGAATCCGACTTTAGAATCAATTTGTAT AAGAATTTACAAACATGTACAATACAATTCAGGTGATATCACTTGGTCAAAGGATGCATGTTGAAAGGAAACTATTAACA AAATATTGCTACAATTTCTAATGAAAAATGGAAAGGGTGCACAAAAAACAGGTATCCATGAATCCATGATCATATAGTAT TAGTATGTAATCATGAAAAGCCGTGTTTTTTTTTGTGGTGATTGCTGTTTACTCTTGTTCTATAGTGAAGATTCCTCCTC ATATTGACAGTATTTTATGCATGTTTGGTTAAAAAAATTCTGGCCCGTGAACGTGAAAATGTAGAGTCTCGATGTAAGTC AAGAGATAGGTGTTGTCAAATTGGGAGTGATATGTACAGTCTTGAACACAAACCATTTTATCTTTTCACCATGTGGAATC AAAAATCGCAACAAAAGTAAATGTGAATAAGTATCACCGATATTCAGTGCTTCAAGCCTACAGGCTACAAGTATCGTTTC TCCATTGCACTTATAAAACACATCTCATACAAAATTAACTTTTTGCATGGTTTCTTTCAATAAAATTATGGGATTTGTCT AATAAAACTTACTTAAACCCACTTTTAATACTTTTACACTGTTTAATTGAAATTCAAGAGGGTCTCACTAATTTTAAAAT GAGATCCATATTTTTAATAGATACATGAATTTCAACAAATCAATAAGAGAGTTTTGAAACGAGTTAATAAATCAGTATTG CTTGCATTTTCCTTGCAAGCACAACATGCTTTGGATGAAACTCATTTTTAACATGTATGTGCAAATGGTTCAATTGCAGA CACAGCACACTCACAAAACGTACCATATCAGTGAGTGGTTCACACTTCTCCTCCCTGGAATGGACCTCAATCGGATGGGC TACTGGTCTAGTCCTTGCCATTCCATCCCTCACCTTCATCTCCTTCCACCTCGACGGGATCCTCCAAAACCTCATCACCG CCGCAGCCACCGGTGTCGGAGCATTCTTCTGCCTCCCAGCAGGCTTCTTCAAAACCACCAAGATCTTCATCCCCTACATC GCCGCCATAGTCCTCGCCAGCACAGTCGCCACCGCTTCCCACACGCGCCACCTCGGCCTCATGATCCGCGCCCAACTATC AGGGCCAATCAACAGAACTCAATTCATCAAAAGACAAGGTGTCTCTAGCAAGCACTCTCTTCATGCCACTGCTGCTGGTA CTTTAGGTGCAGCCATTGTTTCATCCTTCATTTACCACATGCTTAGAGAGCCCCCTGATCGTGATTTCATCAGTCTCTGG ATTGTTTCAATCTTCAGTGGTTTGATTTGGCTAGTGGGGGTGTTACATGCTGTCACTTCTCCAAACAGAGGATCCCCTGT TTTCAACTCTGTTTCATCAACTTTCCACCCTTGCTCTGTTTTCAAACACCCTCATGCAGTTGGAGGGCTAATTGGAGTTT TCATCTCATCCTTTGCCACAATGTGCATTTTCACAGGAGGAGTTCTCTTTGTAGTAGGTCCTCTATGTGTGAAGTCAGTG CATTTGCTTTTTTTCTGGTTGGTTTATTTCCTTTTTCCACTGTTTTCCATGCCACTCTTGCAACCCTTTCAGCAGCTGAT TAAGGCAGATTCTGTGAAGATGAATCTCATGGGGTTCCTTCTATCACTCTTGTCTTCTGGATTTGGATTCTACTTCTGGA ACAGTCACTGGAAATGGGGTCACATTATGATGTTTGGTGCAATTCAGAGCACTGGAACAGGGCTTTTGCATGCATTTGGA AGGGTTTTGGTGCTTGAATGTGCTCCACATGGGAAGGAAGGTGCTTTCTCTGTTTGGTATGCTTGGATGAGAGCTGCTGG GTTGTGTGTCGGGTTCACGGTTGCTGCGGTGGTTCCGGGACATATCAGAACTTCTTTTGGAGCTGCATTTTGTGCTGCAA TTGTTGGGTGTGTTGTTCTTCTTTTTGGAAATGTGAGTGGTGTTGAGGGTGCTGTTGCTGCAGGGCATGTCATGGGGGAT AATGAGAGAGGCACCAATGGCCTTGGCTTAGATTCCAAAGAATCTGTCAGTGTTTGTTTGAAAGATGAAACTCTTGAATT AAATAAGTAAATCAATGTTGCATACTATGTATTCTATGCCTTTTTCATTCTTTGTAAATGATGTTTATGATGATTCTTTC CAAGACTAAACTCTAATATACATATAATGGAAAGACTTTAAGAAGCAGACTAGTATAATAGGCATTGTTCCCTTTCCCAT CCAAA
CDS sequence (LotjaGi4g1v0146600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCAAGCCACTGTTGAAGTTGATGGTGGCCAAGAGCCTGCTTCATCATCTTCTGCTGTACAAGGCTTGAAAATTTA CCCACCCAAAGAGTCTAGTTATGATGACTATGAAGGAATAGGAGAGAAACCATCAAGGTTTGAGGTTTGGGGATGGTATC TCTATGAGTTTTGCTCCTACTTTGTTCAGACTGTTATCATCCCTGTTCTGTTTCCTCTCATAATCAGTCAGCTACAGCAG CTTCATATAGACCCAGTTCAGGAGTGGCACATCAACCACCCTGGCATGACTTGTGGAGAAAAGCAAATTCAACTACACAG CACACTCACAAAACGTACCATATCAGTGAGTGGTTCACACTTCTCCTCCCTGGAATGGACCTCAATCGGATGGGCTACTG GTCTAGTCCTTGCCATTCCATCCCTCACCTTCATCTCCTTCCACCTCGACGGGATCCTCCAAAACCTCATCACCGCCGCA GCCACCGGTGTCGGAGCATTCTTCTGCCTCCCAGCAGGCTTCTTCAAAACCACCAAGATCTTCATCCCCTACATCGCCGC CATAGTCCTCGCCAGCACAGTCGCCACCGCTTCCCACACGCGCCACCTCGGCCTCATGATCCGCGCCCAACTATCAGGGC CAATCAACAGAACTCAATTCATCAAAAGACAAGGTGTCTCTAGCAAGCACTCTCTTCATGCCACTGCTGCTGGTACTTTA GGTGCAGCCATTGTTTCATCCTTCATTTACCACATGCTTAGAGAGCCCCCTGATCGTGATTTCATCAGTCTCTGGATTGT TTCAATCTTCAGTGGTTTGATTTGGCTAGTGGGGGTGTTACATGCTGTCACTTCTCCAAACAGAGGATCCCCTGTTTTCA ACTCTGTTTCATCAACTTTCCACCCTTGCTCTGTTTTCAAACACCCTCATGCAGTTGGAGGGCTAATTGGAGTTTTCATC TCATCCTTTGCCACAATGTGCATTTTCACAGGAGGAGTTCTCTTTGTAGTAGGTCCTCTATGTGTGAAGTCAGTGCATTT GCTTTTTTTCTGGTTGGTTTATTTCCTTTTTCCACTGTTTTCCATGCCACTCTTGCAACCCTTTCAGCAGCTGATTAAGG CAGATTCTGTGAAGATGAATCTCATGGGGTTCCTTCTATCACTCTTGTCTTCTGGATTTGGATTCTACTTCTGGAACAGT CACTGGAAATGGGGTCACATTATGATGTTTGGTGCAATTCAGAGCACTGGAACAGGGCTTTTGCATGCATTTGGAAGGGT TTTGGTGCTTGAATGTGCTCCACATGGGAAGGAAGGTGCTTTCTCTGTTTGGTATGCTTGGATGAGAGCTGCTGGGTTGT GTGTCGGGTTCACGGTTGCTGCGGTGGTTCCGGGACATATCAGAACTTCTTTTGGAGCTGCATTTTGTGCTGCAATTGTT GGGTGTGTTGTTCTTCTTTTTGGAAATGTGAGTGGTGTTGAGGGTGCTGTTGCTGCAGGGCATGTCATGGGGGATAATGA GAGAGGCACCAATGGCCTTGGCTTAGATTCCAAAGAATCTGTCAGTGTTTGTTTGAAAGATGAAACTCTTGAATTAAATA AGTAA
Protein sequence (LotjaGi4g1v0146600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQATVEVDGGQEPASSSSAVQGLKIYPPKESSYDDYEGIGEKPSRFEVWGWYLYEFCSYFVQTVIIPVLFPLIISQLQQ LHIDPVQEWHINHPGMTCGEKQIQLHSTLTKRTISVSGSHFSSLEWTSIGWATGLVLAIPSLTFISFHLDGILQNLITAA ATGVGAFFCLPAGFFKTTKIFIPYIAAIVLASTVATASHTRHLGLMIRAQLSGPINRTQFIKRQGVSSKHSLHATAAGTL GAAIVSSFIYHMLREPPDRDFISLWIVSIFSGLIWLVGVLHAVTSPNRGSPVFNSVSSTFHPCSVFKHPHAVGGLIGVFI SSFATMCIFTGGVLFVVGPLCVKSVHLLFFWLVYFLFPLFSMPLLQPFQQLIKADSVKMNLMGFLLSLLSSGFGFYFWNS HWKWGHIMMFGAIQSTGTGLLHAFGRVLVLECAPHGKEGAFSVWYAWMRAAGLCVGFTVAAVVPGHIRTSFGAAFCAAIV GCVVLLFGNVSGVEGAVAAGHVMGDNERGTNGLGLDSKESVSVCLKDETLELNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 52 | 52 | - | – | |
| PANTHER | 31 | 521 | 491 | 9.3E-228 | – | |
| Phobius | 53 | 75 | 23 | - | – | |
| TMHMM | 53 | 75 | 23 | - | – | |
| Phobius | 76 | 128 | 53 | - | – | |
| TMHMM | 127 | 149 | 23 | - | – | |
| Phobius | 129 | 149 | 21 | - | – | |
| Phobius | 150 | 155 | 6 | - | – | |
| Phobius | 156 | 175 | 20 | - | – | |
| TMHMM | 156 | 175 | 20 | - | – | |
| Phobius | 176 | 180 | 5 | - | – | |
| TMHMM | 180 | 199 | 20 | - | – | |
| Phobius | 181 | 198 | 18 | - | – | |
| Phobius | 199 | 231 | 33 | - | – | |
| Phobius | 232 | 250 | 19 | - | – | |
| Phobius | 251 | 261 | 11 | - | – | |
| TMHMM | 261 | 283 | 23 | - | – | |
| Phobius | 262 | 283 | 22 | - | – | |
| CDD | 266 | 486 | 221 | 0.00961333 | – | |
| Phobius | 284 | 314 | 31 | - | – | |
| Phobius | 315 | 338 | 24 | - | – | |
| TMHMM | 315 | 337 | 23 | - | – | |
| Phobius | 339 | 343 | 5 | - | – | |
| TMHMM | 344 | 366 | 23 | - | – | |
| Phobius | 344 | 365 | 22 | - | – | |
| Phobius | 366 | 376 | 11 | - | – | |
| Phobius | 377 | 398 | 22 | - | – | |
| TMHMM | 381 | 400 | 20 | - | – | |
| Phobius | 399 | 403 | 5 | - | – | |
| Phobius | 404 | 429 | 26 | - | – | |
| Phobius | 430 | 440 | 11 | - | – | |
| Phobius | 441 | 463 | 23 | - | – | |
| TMHMM | 445 | 467 | 23 | - | – | |
| Phobius | 464 | 468 | 5 | - | – | |
| Phobius | 469 | 487 | 19 | - | – | |
| TMHMM | 471 | 493 | 23 | - | – | |
| Phobius | 488 | 534 | 47 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0146600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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