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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0147100 |
| Transcript ID | LotjaGi4g1v0147100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sec14p-like phosphatidylinositol transfer family protein; TAIR: AT1G55690.1 Sec14p-like phosphatidylinositol transfer family protein; Swiss-Prot: sp|Q501H5|SFH13_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH13; TrEMBL-Plants: tr|I1MML5|I1MML5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0147100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:23767946..23771155) extracted from Lotus japonicus Gifu genome v1.2.
GGGAATTAAAAATTTCTCGCCTACTGCTGCAAATCTCTTGTCTGCTATCACAAAAATAGATAACAGTTACTATCCTGAGG TTTTTATACTGTCCCTTCTCAAAGTATATTGTTCTTCAGTCCTCATCCTATGTATAAACATTCAAGATATATTTGCAGAC ATTATACCGAATGTATATCGTCAATGCTGGTCCTGCCTTTAAGAAGATGCTTTGGCCTGCTGCACAGAAGTTTCTTGATG CCAAAACTATTGCTAAGATACAGGTGAAGCATTATAACTTACAGTTGACAGTATTTCATACACTATTTTTCCTGAAGTCC TACTGATATTACATTACTTTCCCAAAATTCCAGGTTCTTGAACCTAAGTCTTTATGTAAATTAATGGATAACATCGACTC TAGGTAAGAATCTATGCCTTCATATGGCATTACAGTGTTTTTATTCCGATTACTGTTAACTTTGTAGTTGCATCTGTACA GCCAGTTGCCAGACTTTTTGGGTGGCTCTTGTAAATGCCCTGGAGAAGGTGGATGTCTTAGGTTTAACAAGGGTCCATGG AATGATCCTGATATCATGAAGGTAATTTGGCTCTGCTATTTCTTGTTTTTTTGTCCTTTCTGTCAGCTTTTGGGGATATC TATGCCTTAGAATTACTTTGTTGAATGCGTATTGGGATACTAATTTAGGTATTATAATTTTAGGTTGTTCATAATGTGGA GACATCATTTATGAGGCAAATCGCCAGAGGGTTCAATGAACAACAACAAATGTTTGACTCTTTTCAGACACACCAACAGC TGGTAAATATCAATCTTCTAGACATTGATGGTTAGGATTTTACAAATGATAGCTTTAGATATCATATACTATTATTTTCT TTTGACTTCAATTTCTCATCTCTCAGGGACGGCACAGTGATATGTCAACAGCAGAATCTGGGACAGATATTGATGATTCT TTCTCACCCATCAGACAAGGGACATTTACTTATCCTCATTTAGCCCCAGTTCATGAAGAAGTGAGTTTTGAATGAAACCT TTTAGTCTGATTCATTTTAAAACAATTATTTTTGTTATTTCATACTGCTTTCACATTATGTGTGTCTCTTGAGCCTTTCT TCATTTAAACGGCCATTTATTCTGCAGGCTAGGATATCAGATAGTTACCATAGTTGTAATGAGAGGGCTCTTGCAGCAAA GAAAGTTCTCAAAAGTGATCAATTTAACCTTACTCAGGAAAAGTCATTGCAAAATGATGAAATGGGGAATGCTGCTTGCA CGGAGAATTCCAAAGGTAAAGTGTCAAGTTATTGAAACATCTGTGTTCCTTTTGTAAATGCTTTTGTCGAAGAATATAAT TGTACATATGCCTCAGTTACAACACTTTGATGTGGAATCCAAGCTGTAAATTTGCCTTATTTTGTCACATTTCAATGTGC AAGTTGGAAACTAATCAATCTAATCTGTATCAGTAGCAAGTATTTCAGTATTTCCCTGATCTTGTTCGACACATTCTCAT TTTTTACAGGAGGATTTGTCAGCAGTTGGCTCAGCTCTGTTAAAGAAAACGTGGAGAAAACAAATTTCTTATATGTGCCA AGAGTGCTGATATATTTTTCCGAAAGATTAGATATGTTCTTCCATAGTTTAGGAATAAAACTTTGGAGAAGACAGAACGA TATTCACCCATCTATTGCCAGGGAACAGATCATAAAAAATCATACAGCAGCGGGTGAAACAGTTTCTGAACAGGATCATA TTCATGCATGCATAAAACGTCTTCAGAGACTAGAAAAAGCATTCGAGGAACTTAGCCATAAACCTGCTAGCATACCTCTG GAGAAGGAGAAAATCCTGATGGGTTCCTTGGATAGGATTAAATCTGTTGAGTTGGACCTTGAACAGACTAAGAGGGTATC CCTCTATACTTTGTTCAATCATCTAATATTATTGATTGTTCTGATGATATGATGTTTGTAGTTTGTGCTATTAATGCAGG TACTGCATGATACAGTGATGAAGCAGTTTGAGATTGCTGAGCTTCTTGAGAATTTGCGGGAATCGAAGTATCAAGTAGGT TGCTGTTTGTGTAATACTTCATAGATTCGAATATTTTACATGTTTTTCTTTGTTGCCGTTTTTTACAGAGTTCCAAGTCT AAAGTGGGTTGTGTTAGGTCATTAACAACTAATGTAAAACTTCTATACCAGACAAAAGGTGCTAGGTTGTTGCTTGATAG AACACAATGATGTCATTTAGTTCCTGTAGCTAAATCCACCTTCCTGCATCGCTTTTGCAGTCAGCTATGAACAAATTGTT TCCTTCTTTAACATAACATAATTAAGATTGTCCAAATTGAACTCAGGGTTGGACCCAAGCATATTAAAAAGGGGATCACC CCCAGAGAGAAACAAATTCTTAATAAAGCAGTATTCAAATATTGTATTCGCACCCACCTATAACTTTTTACACTTGTTCA CTTAGCCATTCTTGATTTTACTTGGTGTGTGAAATTTTCGTCCCCCTTACTCATTTTTCCTAGTCCTGTCTTGAACTTGC GCAATACACACTTTAGTTATACTACAAGTTATCAGAATTCCAATAGAAAAAACCTACTGAAAACAATGAAATTCTATCTG CAGTTATTATTAATATTGACTGAATGACAATTTTCTTGCAGAAAAGAAGGCTGTTTTGTTGAATGATTCAAGTCACAACA AGTTGTTGTTGGCTCTTCAGAAAGACAATTTCAACAAGCACCCCCGTTTGGTCGCAAAAGTACTTATTGGTGCTTATTTA GTGCATTTCTAGTAGATAAGCGCCAAACAGGCAAGTAGAAGAAGACTTAGTGCAAGCTCACATGTTGGACCCAAAGAAGG CGTGGGATTATACAGTTTCATTATTATATTAGTTGCTGCAGAACATCCGTAGAGAAACCTGGGGATGAGGCAGTCCTCAG TTTTTATACATATATAAAATATAGGCTTAATTGCACTTGTGGTCCCGTATTTATGCTAATGTGCAAACGGGGTTGCCATA GTTCAAAATGAGCTATTGGAGTCCCTAATGTTTTCACCCGTTTGCAGTTTTTGTCCTGCAGTATATTCTTCGGAAAAAAA CTAACGTTTTTCTTGTGATGTGATATTTTAATGGAAAAATGTTACTTTTTATGAAATGAAAAGCAAGGATAACTCATTGT TTTCTGTCAA
CDS sequence (LotjaGi4g1v0147100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAACATCGACTCTAGCCAGTTGCCAGACTTTTTGGGTGGCTCTTGTAAATGCCCTGGAGAAGGTGGATGTCTTAG GTTTAACAAGGGTCCATGGAATGATCCTGATATCATGAAGGTTGTTCATAATGTGGAGACATCATTTATGAGGCAAATCG CCAGAGGGTTCAATGAACAACAACAAATGTTTGACTCTTTTCAGACACACCAACAGCTGGGACGGCACAGTGATATGTCA ACAGCAGAATCTGGGACAGATATTGATGATTCTTTCTCACCCATCAGACAAGGGACATTTACTTATCCTCATTTAGCCCC AGTTCATGAAGAAGCTAGGATATCAGATAGTTACCATAGTTGTAATGAGAGGGCTCTTGCAGCAAAGAAAGTTCTCAAAA GTGATCAATTTAACCTTACTCAGGAAAAGTCATTGCAAAATGATGAAATGGGGAATGCTGCTTGCACGGAGAATTCCAAA GGAGGATTTGTCAGCAGTTGGCTCAGCTCTGTTAAAGAAAACGTGGAGAAAACAAATTTCTTATATGTGCCAAGAGTGCT GATATATTTTTCCGAAAGATTAGATATGTTCTTCCATAGTTTAGGAATAAAACTTTGGAGAAGACAGAACGATATTCACC CATCTATTGCCAGGGAACAGATCATAAAAAATCATACAGCAGCGGGTGAAACAGTTTCTGAACAGGATCATATTCATGCA TGCATAAAACGTCTTCAGAGACTAGAAAAAGCATTCGAGGAACTTAGCCATAAACCTGCTAGCATACCTCTGGAGAAGGA GAAAATCCTGATGGGTTCCTTGGATAGGATTAAATCTGTTGAGTTGGACCTTGAACAGACTAAGAGGGTACTGCATGATA CAGTGATGAAGCAGTTTGAGATTGCTGAGCTTCTTGAGAATTTGCGGGAATCGAAGTATCAAAAAAGAAGGCTGTTTTGT TGA
Protein sequence (LotjaGi4g1v0147100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNIDSSQLPDFLGGSCKCPGEGGCLRFNKGPWNDPDIMKVVHNVETSFMRQIARGFNEQQQMFDSFQTHQQLGRHSDMS TAESGTDIDDSFSPIRQGTFTYPHLAPVHEEARISDSYHSCNERALAAKKVLKSDQFNLTQEKSLQNDEMGNAACTENSK GGFVSSWLSSVKENVEKTNFLYVPRVLIYFSERLDMFFHSLGIKLWRRQNDIHPSIAREQIIKNHTAAGETVSEQDHIHA CIKRLQRLEKAFEELSHKPASIPLEKEKILMGSLDRIKSVELDLEQTKRVLHDTVMKQFEIAELLENLRESKYQKRRLFC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 55 | 55 | 2.3E-5 | ||
| PANTHER | 2 | 319 | 318 | 1.3E-138 | – | |
| PANTHER | 2 | 319 | 318 | 1.3E-138 | – | |
| MobiDBLite | 69 | 90 | 22 | - | – | |
| Coils | 238 | 258 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0147100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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