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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0148500 |
| Transcript ID | LotjaGi4g1v0148500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-dependent protein kinase; TAIR: AT4G26470.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q52K82|CML21_ARATH Probable calcium-binding protein CML21; TrEMBL-Plants: tr|A0A151S7V2|A0A151S7V2_CAJCA Putative calcium-binding protein CML21; Found in the gene: LotjaGi4g1v0148500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:24187929..24190338) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAGGTGCATTAGGAAAGGGTGAATCACCCAAGAATGCTTGGATACCAGAAACCAAGCTTGAAGCTAAAATGGTTGA AGCAATGCAAAAGAGGGAATCTCATGGAAGTTCTGTGAAATCATTCAACACTATCATCTTGAAATTCCCGAAAATTGATG AAAGCTTCGGAAAATGCAAAGCCATATTTAAGCAATTCGGTAGGTTTCTAATTCAAATTTATGGTTTTGTTAAGTTGGTA TTTTGATTGTGGATACCTTCTAACAGAAGTCTGATATAAATGTAAAAAATGGGCCTGAAAGTAGAGACTACAATGTCATG CCAAAGTAATAGTAAGAGGTTAGTCTCTTCTCAGAACTTTTTATTACGCGTATGCCATGAAACACTGCAGCTAATCATAT GGTCAAAAGTTACAATATTTATAGGAATTCAATTAGATTTTAGTCTATTCTAAAACTAATAAGCAGTGCTTAATTTTGTT ATTAGAACTGCAATTGTCAAGCTTATTTATAGGCTCTAGCAGTGCAGCAGCAAAAAGTCATTAATCAATGTTTTTTCACC AATACGTGCACACCCAAATCGATATATCTATTTATTATAATTGCTAAGGTTTGTGGCGTTTCTTACAGATGAGGATTCTA ATGGGGCAATAGATCAAGAAGAATTGAAAAAGTGTTTCAGTAAGCTGGAAATTTCTTTTACTGAGGAGGAGGTCAATGAT CTTTTTGAAGCATGTGATATCAATGAGGATATGGGAATGGAGTTCAGTGAGTTTATTGTGCTACTCTGCCTTGTGCACCT TCTCAAGGATGACCGAGCAGCAGTTCAAGCAGTATCCTATCATCTGTGCCACATTAATTTCATTACTGTATATGCTAAAA CACAAATTTGGGAGAAAGACTAGTAACGCCAAACATATTGATATGAACCAACTACCTATGCTAGGGCTAAAGCACATGAA TGTTTTTATATCTAACACATCCCTACGCAAAAGCCATATGGGCTTGAAGCGTGGATAATGCACCGGTTCAACCAACCTTG TGCTGAAATTTAGTTTTTATTTAGAATAATGGGTGTAAAAAGGATTGAACTCTAAATTACTTAGAGGCTCTTAAGCTAAA AGATAAAAGTATATGAATGGTTTAATATCTTACACCTCAAATTTTATGTGCTCTAACCTCCGGTTCTTGTTTGAATTATT TGGATTATTATAACTTTTAACTCCAGAGAATTGAATATAGATTCTTTTGTATTTCTGTAGCTGTTTTGACTTAATGAACA ATTCAGTTCTATTTTTTCAATCAAGTTTTTCTGGCTTGGCCTTGCTTTTCTAATTCATGCATTTCTTCAGGGACAGCCTA GACTTTTATCATTCAAATATATGAAAAGTTGTAATTTATCATTCAGTGAAGTTTGTCAAATAATCCATTAAAATTGAAGA ACAGGTTATAAGCTTTTTAGTTTGAACTTTGATGCAATGCAATGCAGAAGACATTAATGGATTTCATGCTTGCCTTCCTG TTTTCTTCGATAACTATAAGTGATGAGTTTCCATATGTCTTACCTTTTCAAATTGTTCTCCCTGACTTCACTAGAAATCT AGAATTGGAATGCCAGATCTGGAGACCACATTTGAGACTTTGGTTGATACATTTGTATTCTTAGACAAGAATAAGGATGG ATATGTAAGCAAAAGTGAAATGGTCCAAGCTATAAATGAAACTGTATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGA AAAGATTTGGTCAGTTGTCTTTCCTTATCCCTCTCTGTAAATACATATACATATACACTCACATAGTGTGCATTCAAGCT TGCTTAAACATAGATATGAACTAAATGTTTTGAACATGTTTTCAGTTTTCACAAGAAAAGAACAAAGAATATCTATTACA TTTAGTGGTCAAGCTAGATCATAAGACACATTTTTTCGAAAAACTAGTAGAGGCAACATTAAAGGATCATGACAGGCTAA GCATCTTGTACTCCTTGTATTGCTGATAGGTTGTCTATTTATCTGTTATTTTTTCGGTCTACTCATGTTAGTATTTCTCA TGCTTATGCATGAAATGTAGAACTAGCATCAGTAATATGTATTGGGACCTAATTTTTTTTTTTCATTTACGTACTGTAAA TAAAAACTGACCATCACTCGTTCTAAAATTTCACTCCAATGACTCCTATACAGTAACAACTCAAAAGCAACAGTGTCTAT TTTTTTCTTCCCTAGTAGTATTTTATGTATTAATGTTAATCTTGTATTTTCTGCAAAATGCTGCAGAAGAAATGGATTGG GATAAAAATGGAATGGTGAACTTTAAGGAGTTTCTTTTCGCATTCACGCGTTGGGTTGGAATTGAGGATGAGGAAGATGC GGAGGCCTAA
CDS sequence (LotjaGi4g1v0148500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGTGCATTAGGAAAGGGTGAATCACCCAAGAATGCTTGGATACCAGAAACCAAGCTTGAAGCTAAAATGGTTGA AGCAATGCAAAAGAGGGAATCTCATGGAAGTTCTGTGAAATCATTCAACACTATCATCTTGAAATTCCCGAAAATTGATG AAAGCTTCGGAAAATGCAAAGCCATATTTAAGCAATTCGATGAGGATTCTAATGGGGCAATAGATCAAGAAGAATTGAAA AAGTGTTTCAGTAAGCTGGAAATTTCTTTTACTGAGGAGGAGGTCAATGATCTTTTTGAAGCATGTGATATCAATGAGGA TATGGGAATGGAGTTCAGTGAGTTTATTGTGCTACTCTGCCTTGTGCACCTTCTCAAGGATGACCGAGCAGCAGTTCAAG CAAAATCTAGAATTGGAATGCCAGATCTGGAGACCACATTTGAGACTTTGGTTGATACATTTGTATTCTTAGACAAGAAT AAGGATGGATATGTAAGCAAAAGTGAAATGGTCCAAGCTATAAATGAAACTGTATCAGGGGAGCGTTCTTCTGGAAGAAT AGCCATGAAAAGATTTGAAGAAATGGATTGGGATAAAAATGGAATGGTGAACTTTAAGGAGTTTCTTTTCGCATTCACGC GTTGGGTTGGAATTGAGGATGAGGAAGATGCGGAGGCCTAA
Protein sequence (LotjaGi4g1v0148500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGALGKGESPKNAWIPETKLEAKMVEAMQKRESHGSSVKSFNTIILKFPKIDESFGKCKAIFKQFDEDSNGAIDQEELK KCFSKLEISFTEEEVNDLFEACDINEDMGMEFSEFIVLLCLVHLLKDDRAAVQAKSRIGMPDLETTFETLVDTFVFLDKN KDGYVSKSEMVQAINETVSGERSSGRIAMKRFEEMDWDKNGMVNFKEFLFAFTRWVGIEDEEDAEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 225 | 225 | 7.4E-119 | – | |
| PANTHER | 1 | 225 | 225 | 7.4E-119 | – | |
| Gene3D | 8 | 119 | 112 | 3.5E-16 | – | |
| ProSiteProfiles | 54 | 89 | 36 | 13.202 | ||
| SUPERFAMILY | 56 | 221 | 166 | 2.07E-31 | ||
| Pfam | 58 | 117 | 60 | 6.4E-9 | ||
| SMART | 58 | 86 | 29 | 2.3E-4 | ||
| CDD | 58 | 119 | 62 | 9.72761E-12 | ||
| ProSitePatterns | 67 | 79 | 13 | - | ||
| ProSiteProfiles | 90 | 125 | 36 | 8.125 | ||
| SMART | 94 | 122 | 29 | 16.0 | ||
| Gene3D | 131 | 226 | 96 | 2.8E-12 | – | |
| ProSiteProfiles | 145 | 180 | 36 | 10.552 | ||
| Pfam | 148 | 212 | 65 | 3.5E-7 | ||
| SMART | 149 | 177 | 29 | 0.078 | ||
| CDD | 150 | 213 | 64 | 4.72028E-7 | ||
| ProSitePatterns | 158 | 170 | 13 | - | ||
| ProSiteProfiles | 183 | 218 | 36 | 9.939 | ||
| SMART | 187 | 215 | 29 | 2.6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi4g1v0148500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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