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LotjaGi4g1v0150400.2

Overview

Field Value
Gene ID LotjaGi4g1v0150400
Transcript ID LotjaGi4g1v0150400.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Disease resistance protein (NBS-LRR class) family; TAIR: AT3G14460.1 LRR and NB-ARC domains-containing disease resistance protein; Swiss-Prot: sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460; TrEMBL-Plants: tr|G7IW90|G7IW90_MEDTR NB-ARC domain disease resistance protein; Found in the gene: LotjaGi4g1v0150400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:24720378..24725058) extracted from Lotus japonicus Gifu genome v1.2.

TGTCCTTATCATATGCACCTCAAACACAGGATATGATAAGAGTCTATCCTGCTCTTATCCTATCCTGTTGATATCCTGTT CACATATCATATTCTATCATATCCTATCCTGACCACCAAACGGGCCCTAATAATAGTGACGACGACTCTTTGTTGACAGT ACCGTTTCCCTCACTTGAATCTCTTAAATTTGAAAATATGCCTTGTTGGGAGGCGTGGAGTTGTTTTGAGCACCCACGTG CTTTTCCTCAGCTCAAGCATCTTACCATAGCAAGATGTCCAAAATTGAAGGGAGATTTGCCAAGTGACCTCCCTGCTCTT GAAGAACTTGAGATAAAAGATTATAACCAACTTGCCTGTTCTCTCCCGAGGGCTCCTGCCATGCGGCAAATAAGAATCTA CAAAACAAATAAAATTTGGAAATTGTCGGATTGCTCGACTATGGAAATACAGAGCAGCAGTAGCAGCAGCGACTCGCTCA CGTCACTGGCACTGGATACTTATCCAAATCTCGAACATTTATCCATCTCATACTGTGAAAATTTGGAATCTGTTTCGGTG TCACAATCAGGAGATGGAGATGCCGCTCTTCAAAATCTGACTCGTCTTGAGATCTACAATTGCCCGAATCTAGTATCATT GGCAAGAGAAGGATTGGCTACGCCCAAAATGACACGCTTCGTCGTCTCCGATTGCGACCAGTTAGAGTCATTGCCACCTC GGATGAATACTCTTCTCCCAAACATGGAAACTCTTGAGATACATGACTGCCCAAGAATTGAGTCGTTTCCTGAAGAAGGT ATCCCGCCAAGCTTGAGATCAATTTGGATCAGTAATTGCGAGAAGCTACTGAGCAGCCTAGCATGGCCATCCATGGACAC GCTTACCGAAGTCACGATCTGGGGTCCATGTGATAGGTTCAAGAAGTTCCCAAAAGAGGGTTTGCTGCTTCCCTCCCTGA AGAAGTTATCGCTACTTTATTTCTCGAGTCTGGAGACGTTGGATTGCAAGGGGCTTCTCCACCTCACCTCCCTCCAAGAC TTAAGAATTCAGGGTTGTCCAAAGCTGGAGAACGTGGCGGGAGAAAGGCTGCCTGCATCTCTAACTGGACTGCACATCTA TGGATGCCCTTTGCTGAGAGAACAGTGTCGCACGAAGCACCCTCAAATTTGGCCCAAAATTTCCCACATCCACCGCATTG AGGTTGATTGGAAAGTAATTTCATGAGCCAGGTCGTGATTATCAATAGGTAATTCTTCTGCTTTCACCCACTTTTCTTCA TTATCTCCTCTACAAACCAAACCTACTTACCTTAACATCTCTTCTTCATCTTCTTTACAGTTGCTATGTGAAACTGTCCA CAACAATGATTTGTTTACATACTTACCAATTACCATCATGAGGTAATGGTTATCAAACAATTGATCTATTTGCAGCATAT AAAACTTTGATGTTAAAAAAATACACTCTTTTTTTGCGTAATACAAATACGATGGAAATAGTCTTGAAATATTAGTGTTT TTTTTTTTTTTTGTTTTCGGTAAGGAATTTTTTGTGTTTTCTCTTTGAAGAGTATTAGTGTTTTCTTCATTGGCTTGTTT GTTGGTTGATTCGAAGTGTACAATTCAGAAAATTCATTTGTTTCTGATGTTCTTTATGTTGAACATTTGAGTATCTTTTA ACCAAACAAACTGCAGATTCTTATTTAGTGATCTTCATCTTGTTTTTGCAGATTGTTATGTGGGCAGATGGTCATGCCGT TGAACTGTGCAGCTAGAGCAAAGATTTTTTTGTTTACTATCATCAGGTAGAATTATCCTACAAAAGATCTCTTTGCAGAA TATCAATCTCTTTAGTAATAAAGAAAGATATGTTCGGAAATAGTCTTGAAATATTGGTGTTTCCTATTTTTCATTAGTCT ACTAGGGAAGGACCTGCTTTTTAATGAACATCATATGTGTTCTACTCCCTGAATTAAATTATATATTTAATGAAAACTGA TTTAGTATATACGGTACTGAATCTTCAGGAAATTAGCATATTTTCAAAGGAAATACGGGGCAAAAGGTTGCTTACCATTC TCAAGATTGGAAGAAGAAATATAAAATACAGGTATTACTTGTGTGTCATAATTAAATACTTCAATATAAAGCAAACTGTG TGTAACGCAAGCATTATTAATCTGTGGCATTTTATTTGAAATTTCTCAGTATACTAGCAATCACCACTGGTGCTGGTTTC TTCATATTACATAAATTTAGCAATTGAATTAGCTGTAGTTAGTTCAGTGTACATACTAATGTTCGGCTTATTGAGGTCAG AATGGAATTTCTGATTCTTGGTATCTGGTTTTTATTTTTCAGATCTGTTATGGAGTATGAAATTATAATTGTATTTCTTT TCTCACAAATCTGCCATGCATGATATTTTAGGAACTTTTTCCCTTCCTAGACTCCTAAGAGACATGGGCTTCTCCATTTT GAAAAGTTCCCCATTTATTAACAATTCTTTACATCAGAGACTCTGCCATCCATCAAGCTTATCAAAATATCCTCCCAGCA AGGAGATTGGCACTTGAATTGCAGGGATGAAGCAACCAGAAGGTACCTCGTATAGATTGATTCTTTTTAAGTTATGGCAA AAATAATTATATTAGTATTTAGTTTTATGATAATGACTTCAATTACTATTTGTGTAACCACATTGATTCCATGTTGATTA CAAATTTGAATTTTGCATGTTGACATCTCTGTCATGAAGAAAACATCATTCATTGAATCTCCTATCTTTTAAAAGTATGA GAAATATGTATATCATTGGTGGTTGAAGGTTTGCATCCTCAAAGACAGTTACATCTAAGCCTTCTAAAACAAATACAGCT TTTTATGATGTTATTTGTTTCATCAGGACGGTTGGCTATGTTGTCTGTGCCACTTTATTCATCCATCTGTGGCAAAAGGG TGCCTTGTTAGATAAATAATATGCATTCAATTTTTTTACCATATCAGGCAAGGAGCTGCTGGAGGAAGGGAGCAAGAAGT TGGCTCCAGGGTTAGATAAGAAAAAGGAACTAGGTCCCATGTCACAGCAAAAGGCAATGTGGAGTTAGGCGTATCGATAC AGGTATTTCAAACAAGATTTATTGAATGTCTGCCTCTATTTTATATCTTTTACGTACCATTTAGACCATGTACAATGGTC ACAACAATTTTCAACAATTTAACACCATTTTTTCTCTACCCAACACTCTACATCATTTTCTCTCTCCAATTCAACAAACT CTCAACAATTACTACTCCAATGGTTTTCATTCAACATCCTACCCCACCACTTTTTTATTTCATTTTTTTATTTAATTTTA TATTTTTGTTTTATTATTTACATAAAATTACCATTATTATCTTAAATTAAATTAAAACAATAAACACTTAAAAAATTAAT TTTGGTGAAAAACTTGGTTTTTTTTCTGTGTCCAAATCAAACGAACCAAGTCTCTATTTATAGAGAAAAAAAATCATGAA TTTTGGTATAATTTTTTTTTCAGAAAATATTTTTTTTGATGAAATAATTGAGTTCAAAAGATAAGGGTAAAAGAAATCCG GCCAACCAGTCAGAAATTGACACGTGGCAAAGCAAAAAAAAAAAGGTTTCTCTCTCCTGCAGACAAGGCGCGCGTGCACG CGCCTAACGGTGGCCACTGGCCTCGCGCCACGTGGCACACCGCAGGCAGCTCAACATTGTTGAACATTTTCAACATTTTT CCCCTCTCTCCTCACTCTCAACAACCTTCAACAACCATTACAACCATTCAACAATCTTCAACAATTTTCAACACCAATTT TCATCAACCATTGCACTTGGTATTAGTGTAGTGACCCTGAAAGTGGGAAAATAAAGGGAAAGTTTTACACTTCACTGTCT TTTATTTTATAATATTGGGGGCATCAGTCCAACAGACAGAAACTACACAAGTCTGGGGAAAAGTAATTCCCATTTCTACA GTGTCTTCTTTCAACTACAACTTATTAGCTTATCTTATTATTGTCTGATGCAGCAAGGGAAACGTCAGGTAAGATGGCTT AAACCGGGGCATGAAATATTTAAGCTTAATTTGGATGAGAGTAATCTTGGCAATCCTGGAAATGCAGCAAGGGCTAACTT TTTTGGCATTTGCTTGAATAACGAAGCTGAGTTACGCGCTATTCTTGAAGGCTTACTTGTGTGTAAGCAATTGGGGTATG CTGGTATTGGCATGGAATGTGATTCTAATGTTGTTGTTAGCTGGTCTCGGTCTCGTTCTTGCAAGCTTTGGTATCTTTGG GACTTTTGGGAATCACTTAAGGGGTTATTGGATGTTATGGATTACTCTATTCATCATATTTTTTGAGAGGGAAACTAGGA GGCAAATGCTTTGGCTCGTATTGGTGCTAGTGGAATCAACTTGTTATTTACCAATGTGAAACATCTCCCTAGGCTTATAA AAGGTTTGATTAGGTTAGAGAAAATGGGTATTGTTTATGTTAAGACTTGTTTAATTTGTTCTTTTGTGTTTGCTTTTTTG TATTTTGTTTGTTTTGATACTTGGGATATTGTTTTGCTTTTGTAAATCCCTAGTGTTTGGTTGTTACCACGGTTTTTCTC CGCCATAAGTGAGGTTTCTTAATAGAGTTTGGAGGTTCCGC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0150400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCTTGTTGGGAGGCGTGGAGTTGTTTTGAGCACCCACGTGCTTTTCCTCAGCTCAAGCATCTTACCATAGCAAGATG TCCAAAATTGAAGGGAGATTTGCCAAGTGACCTCCCTGCTCTTGAAGAACTTGAGATAAAAGATTATAACCAACTTGCCT GTTCTCTCCCGAGGGCTCCTGCCATGCGGCAAATAAGAATCTACAAAACAAATAAAATTTGGAAATTGTCGGATTGCTCG ACTATGGAAATACAGAGCAGCAGTAGCAGCAGCGACTCGCTCACGTCACTGGCACTGGATACTTATCCAAATCTCGAACA TTTATCCATCTCATACTGTGAAAATTTGGAATCTGTTTCGGTGTCACAATCAGGAGATGGAGATGCCGCTCTTCAAAATC TGACTCGTCTTGAGATCTACAATTGCCCGAATCTAGTATCATTGGCAAGAGAAGGATTGGCTACGCCCAAAATGACACGC TTCGTCGTCTCCGATTGCGACCAGTTAGAGTCATTGCCACCTCGGATGAATACTCTTCTCCCAAACATGGAAACTCTTGA GATACATGACTGCCCAAGAATTGAGTCGTTTCCTGAAGAAGGTATCCCGCCAAGCTTGAGATCAATTTGGATCAGTAATT GCGAGAAGCTACTGAGCAGCCTAGCATGGCCATCCATGGACACGCTTACCGAAGTCACGATCTGGGGTCCATGTGATAGG TTCAAGAAGTTCCCAAAAGAGGGTTTGCTGCTTCCCTCCCTGAAGAAGTTATCGCTACTTTATTTCTCGAGTCTGGAGAC GTTGGATTGCAAGGGGCTTCTCCACCTCACCTCCCTCCAAGACTTAAGAATTCAGGGTTGTCCAAAGCTGGAGAACGTGG CGGGAGAAAGGCTGCCTGCATCTCTAACTGGACTGCACATCTATGGATGCCCTTTGCTGAGAGAACAGTGTCGCACGAAG CACCCTCAAATTTGGCCCAAAATTTCCCACATCCACCGCATTGAGGTTGATTGGAAAGTAATTTCATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0150400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPCWEAWSCFEHPRAFPQLKHLTIARCPKLKGDLPSDLPALEELEIKDYNQLACSLPRAPAMRQIRIYKTNKIWKLSDCS TMEIQSSSSSSDSLTSLALDTYPNLEHLSISYCENLESVSVSQSGDGDAALQNLTRLEIYNCPNLVSLAREGLATPKMTR FVVSDCDQLESLPPRMNTLLPNMETLEIHDCPRIESFPEEGIPPSLRSIWISNCEKLLSSLAWPSMDTLTEVTIWGPCDR FKKFPKEGLLLPSLKKLSLLYFSSLETLDCKGLLHLTSLQDLRIQGCPKLENVAGERLPASLTGLHIYGCPLLREQCRTK HPQIWPKISHIHRIEVDWKVIS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.80.10.10
5 154 150 1.3E-11
IPR032675
SUPERFAMILY
SSF52058
16 328 313 8.16E-27 –
PANTHER
PTHR34630:SF15
79 219 141 9.3E-38 –
PANTHER
PTHR34630
79 219 141 9.3E-38 –
Gene3D
G3DSA:3.80.10.10
180 328 149 4.4E-14
IPR032675
PANTHER
PTHR34630:SF15
205 336 132 9.3E-38 –
PANTHER
PTHR34630
205 336 132 9.3E-38 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0150400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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