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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0153100 |
| Transcript ID | LotjaGi4g1v0153100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G06170.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9LND0|BH089_ARATH Transcription factor bHLH89; TrEMBL-Plants: tr|A0A0L9TN61|A0A0L9TN61_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0153100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:25421660..25423743) extracted from Lotus japonicus Gifu genome v1.2.
GCCTAGTCCAAAAATGTATGAACAAAGTAGTTGCTTTGATCCTGATCCTATGATTGTACATGGCACCCAAATCGTTTCAG AATCAGACCCTCCAATTGAAGCAGTTATAACTGGCACTGCAACAAGGACCAACCACAGGTTTGCAGAGAATGTGGGTCTT TCTGTGGAAAGTTTGTCACACCCATATTCCTCTGGTGAAGATGCTATAACTGTTGCTGCTTCTGTTGATACCACTACAAT GGAGATCACAGCCTCACACCCCCAACAAATGGATTTTCACAAGGAAAATGAAAATCCATACAACAATCACAGCAATGGCT TCAACAATGGTTCAAGTCATGACCTTTCCTTTCACCAAAACCAGCATTTTCCTTATACCATACCAACACCAGATCTTCTC AACCTTATGCCAAGAACCCAAGCCTTTCCATTTGGGAACTCCTCTGTTTCTTTTGAAAACACAAACTTGCCTGTTTTCTA TGACCCTTTGTTGCATTTGAACCTGCCACAAGCACCTCCTCCACCCCATGGATACTACAACAACAACAACACCATTCCAC CTTCAAGGAATGGAAGTTTTGTCTTTGGGGAAGAGGAATATGGCATGGAACAAGATGGGAGAGCTTTTGGGAATGGGGTG TTAGAGTTCACTCAGGATGTGACTTGTGCTGGTAAAAAGAGAGGAGGGAAAAGGGTCAAGCAAGTCACTGTTACCACTGA GAGACAAAGGAGAGAGGATTTGAGTAGCAAGTTTGATGCTTTGAAAGATCTCATCCCAAACCCCACAAAGGTATTGTATT AATTCTTCATCCCAATTCCCAATTTTTATTTTTTACTTCATCAGTTTCTTTTGATGTTCATAAATTGTTGGTCTTACCAT TTTTCTTCTTTTGTTTGTTTTGTGGGAAACATTGAAATCAAGACTGATAGAGCATCTGTGGTGGGAGATGCTATTGACTA CATCAGAGAGCTTCTAAGGACAGTGAGTGAGCTGAAATTGCTGGCTGAGAAGAAAAGGCATGAGAAACAAAGGATCAAGA GGCAGAAGGTTGAAGAAGGTGGCTTGAAGATGGTTCCAATTGGTGACTCAGATGAACACTCTTACAATGAAAGCTTGAGA AGTTCTTGGATACAGAGGAAATCCAAAGACACTGAGGTTGAAGTGAGGATTATTGATGATGAGGTAACAGTAAAGCTTGT TCAGAGGAAGAAGATCAATTGCTTGTGGTATGCTTCACATGTTCTGGAAGAACTTAAGCTGGATCTTCAACATGTTTCTG GTGGACACATTGGAGATTTCTGCAGCTTTTTGCTCAATAGCAAGGTGTGTTCTGAAATGGGTTATTTTAATTTCATTTGT TTTGCCTTTAAAGTGTTTGTGTAAATGTGTGTGTGTGTGTGAGTATATATGTTTGCAACAATGATATATACACACCTCAT TTTTTAAACACTTCATTTCCACCTATTTTTGTTTCTATCTCTCTCCTCTTATCATCTATCACATCTCATATTTTCTCTCT CTTACTTTTTCTTTTCTTTCTATCTCTCTCCTCATTCCACCTCTTCCACCTCTATAAGAGGTGTGTAAATAACATTTTCC TATATGTTTGTGTGTGTGTGTATTGAAGTTTGAGATTTTGTTTTGTGGCAGATATGTGAAGGTTCCTCTGTTTATGCAAG TGCCATTGCCAGCAAACTCATTGAGGTATTGGACACAAGCTTTTCAGCAGCATGACTCTGTGGTTCTTACTTGAAGCTAC TGATTGGAGTTGATTTTGTTTCTTCCATTTCTCATTATTAGTATTTGTATTTCCTAAGTTTCACTTGTAGCTTTAAATTT TGAGTTTTGAATTTCAAAGAATAGGCATATATAGTTGGAAACAAACAAGAACCATATTAGTTAATTAGTTAAGTTCAAAG TAATGTTGTTCTCCTTTAAAACATCAAAGAGTTATGGAGATTATTTTAGGAAAGATCTGCAACAGCAAGCATTGGCACAC TACAGTATATGTGCTACAGGGTAAATGGTGCATGACATATTCTGATGTTTTCATGACTGGATCACAGTAAAGAACCGAAT TTTA
CDS sequence (LotjaGi4g1v0153100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGAACAAAGTAGTTGCTTTGATCCTGATCCTATGATTGTACATGGCACCCAAATCGTTTCAGAATCAGACCCTCC AATTGAAGCAGTTATAACTGGCACTGCAACAAGGACCAACCACAGGTTTGCAGAGAATGTGGGTCTTTCTGTGGAAAGTT TGTCACACCCATATTCCTCTGGTGAAGATGCTATAACTGTTGCTGCTTCTGTTGATACCACTACAATGGAGATCACAGCC TCACACCCCCAACAAATGGATTTTCACAAGGAAAATGAAAATCCATACAACAATCACAGCAATGGCTTCAACAATGGTTC AAGTCATGACCTTTCCTTTCACCAAAACCAGCATTTTCCTTATACCATACCAACACCAGATCTTCTCAACCTTATGCCAA GAACCCAAGCCTTTCCATTTGGGAACTCCTCTGTTTCTTTTGAAAACACAAACTTGCCTGTTTTCTATGACCCTTTGTTG CATTTGAACCTGCCACAAGCACCTCCTCCACCCCATGGATACTACAACAACAACAACACCATTCCACCTTCAAGGAATGG AAGTTTTGTCTTTGGGGAAGAGGAATATGGCATGGAACAAGATGGGAGAGCTTTTGGGAATGGGGTGTTAGAGTTCACTC AGGATGTGACTTGTGCTGGTAAAAAGAGAGGAGGGAAAAGGGTCAAGCAAGTCACTGTTACCACTGAGAGACAAAGGAGA GAGGATTTGAGTAGCAAGTTTGATGCTTTGAAAGATCTCATCCCAAACCCCACAAAGACTGATAGAGCATCTGTGGTGGG AGATGCTATTGACTACATCAGAGAGCTTCTAAGGACAGTGAGTGAGCTGAAATTGCTGGCTGAGAAGAAAAGGCATGAGA AACAAAGGATCAAGAGGCAGAAGGTTGAAGAAGGTGGCTTGAAGATGGTTCCAATTGGTGACTCAGATGAACACTCTTAC AATGAAAGCTTGAGAAGTTCTTGGATACAGAGGAAATCCAAAGACACTGAGGTTGAAGTGAGGATTATTGATGATGAGGT AACAGTAAAGCTTGTTCAGAGGAAGAAGATCAATTGCTTGTGGTATGCTTCACATGTTCTGGAAGAACTTAAGCTGGATC TTCAACATGTTTCTGGTGGACACATTGGAGATTTCTGCAGCTTTTTGCTCAATAGCAAGATATGTGAAGGTTCCTCTGTT TATGCAAGTGCCATTGCCAGCAAACTCATTGAGGTATTGGACACAAGCTTTTCAGCAGCATGA
Protein sequence (LotjaGi4g1v0153100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYEQSSCFDPDPMIVHGTQIVSESDPPIEAVITGTATRTNHRFAENVGLSVESLSHPYSSGEDAITVAASVDTTTMEITA SHPQQMDFHKENENPYNNHSNGFNNGSSHDLSFHQNQHFPYTIPTPDLLNLMPRTQAFPFGNSSVSFENTNLPVFYDPLL HLNLPQAPPPPHGYYNNNNTIPPSRNGSFVFGEEEYGMEQDGRAFGNGVLEFTQDVTCAGKKRGGKRVKQVTVTTERQRR EDLSSKFDALKDLIPNPTKTDRASVVGDAIDYIRELLRTVSELKLLAEKKRHEKQRIKRQKVEEGGLKMVPIGDSDEHSY NESLRSSWIQRKSKDTEVEVRIIDDEVTVKLVQRKKINCLWYASHVLEELKLDLQHVSGGHIGDFCSFLLNSKICEGSSV YASAIASKLIEVLDTSFSAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 419 | 419 | 7.7E-128 | – | |
| PANTHER | 1 | 419 | 419 | 7.7E-128 | – | |
| Gene3D | 220 | 305 | 86 | 2.4E-11 | ||
| SUPERFAMILY | 226 | 296 | 71 | 1.41E-14 | ||
| ProSiteProfiles | 227 | 276 | 50 | 15.015 | ||
| SMART | 233 | 282 | 50 | 3.0E-12 | ||
| Pfam | 235 | 276 | 42 | 1.3E-9 | ||
| CDD | 236 | 281 | 46 | 1.12518E-12 | ||
| Coils | 273 | 303 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0153100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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