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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0159000 |
| Transcript ID | LotjaGi4g1v0159000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT1G67900.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9C9V6|Y1790_ARATH BTB/POZ domain-containing protein At1g67900; TrEMBL-Plants: tr|V7C6I9|V7C6I9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0159000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:28092776..28097251) extracted from Lotus japonicus Gifu genome v1.2.
CAACAATGGCATCTCTCTACAGTTAAGAAAACAAAAAGCCTACAACATCGTAGAATTCTAATACGAGGTAAGAAAGCAAG GTAAAGTAAAAAATAAATACATAAATGAGAATTTGCACAATGAATGATTCAGTTCAGATGCACTCACCTTCGATTTGTTG CATACTTTTTCATGGTTGTTGAGTTGTGCTGCTAAACTGTTTAGTTACTTACTTTTACAGCGTGATTTGCATTAATCCTT TCTGTTTATAATGTCCAAACTCCAAATCACTTGTAACTATTTTGACTGGAAAGACATGCACATAATTTTGGAGTGTTTTG ATCACTTCATGTTCTTATTTTCTGTTTATTTTCCATATATGGTGTCACTCCTACATATTAAATTAACCTGCTTTATATTA CTTGTTCCCACAACAAACCCCCCTCTTTCTCTCCTCCAAGAAAATTCTCTGCTCTTTTTTTTAGCTTTTCCTGTCTGAGT GTTCTTCAAGTTTTCTCTACTAATGTCCTGAAATTTATCGATTTTCCACTTGAGCTTGCTTAAGCGGGAAAATCCATCAC AATTGCAGACATAACAATAGAGTGTTTGTGTGGAGCTTCTTTCACTAGCTGAGCTATTCTATGCAGTTCTTTTGTGTTCT GCAGTACTGAATTCTCTTATGCAAGTAGTTAGTGCAAGAAATTGCCACAGTTATGAAGTTTATGAAACTGGGATCTCGTC CAGACACCTTCTACACTTCAGAGTCTGTAAGGTAAGGCCTAAACTGATGAACTTGATTGCTTCTCTTTGTAGATTATGAT GTATCAGCTCAGTTCCAGGTAAGTAACATGAGGTTCTTTTCTTTGTATGCAGGACTGTCTACTCTGAAGTTTCAAGCGAC CTGATAATTCAAGTGAAAGGAATTAGATACCTTCTCCACAAGGTTTGCTTCTTGATACTTTCGAAAGCGAGAAGGATACT CATGGTTTTAAATTGCAGTTCGCAACTGTAATTGTGGTTGTTATGTAAACGTTTTTAAGTCCCCACAATATCACCGCGAC TGCAATTGCGGCTGTTTCATGGGTACCAATGATTGAAACTGTACAAGTTTTCATAATCAACAACCTCAGTTCCTTTTTCA TCTTTTCTATCTTTTGTTTTCAATTTTTATGTTATTCACATGTTCATAATCTGAAGTTCATGCTGATGCTGCTGTTCTTG TTCAGTTTCCCCTGCTTTCCAAGTGTTCGCGCCTGCAAAGGCTATGCTCAGACCACTTTCCTGATTCTCCAAAGCATCAA ATAGTACAGCTTCCTGATTTTCCTGGTGGGGTGGAGGCCTTTGAACTGTGCGCGAAGTTCTGCTATGGAATCACCATCAC TCTCAGCGCTCACAACATTGTCTCAGCACGGTGTGCTGCTGAATACTTGCAGATGACAGAGGATGCTGAGAAGGGAAACT TGATTTACAAGCTTGAGGTTTTCCTAAACTCCTGCATTCTTCATGGCTGGAAGGATTCCATTGTAACTCTACAAACCACA AAAGCATTAGCTCTGTGGTCAGAGGACTTGGCAATTGCAAGCAGATGCATTGAAGCTATTGCCTCAAAGGTCTTAAGAAA CCCCACAAAGGTGAGCTTGTCACATAGCCATTCGCGACGTGTCAGAGATGATATTTCTTTCAGCGGAACCGAAAGTCTCA ATCTCAGACACAAATCATCAAACAGATGGTGGGCTGAGGATTTATCAGAACTAAGCATAGACCTCTATTGGAGAACCATG ATAGCTATCAAATCTGGTGGCAAGTTACCCTTTTATCTCATTGGTGACGCGCTGAAAGTTTATGTGTCTCGAATGCTACC AAATATCAAGAGAAATATTGAGCTAGCTGGATCTGATTCAGATTCAGATTCAACAATTGAAATAGCAACTTCAAAGCAGC GTTTGCTCTTGGAATCAATAGTAAGCTTGCTTCCATCTGAGAAAGGTGCTGTTTCTTGCAGCTTCCTTCTCAGACTCTTG AAAGCAGCCAACATTCTCAATGCTTCTTGTTCATCTAAAATGGAATTAGCAAGAAGAATAGGACTTCAATTAGAAGAAGC CACTGTGAATGATCTTCTAATTCCCTCAGTATCTTGCAAACATGATATGATTTATGAAGTGGATTTGATGATGAGTATAT TGGAACAGTTCATGGTTCAAGGTCAGAGTCCACCAACTAGTCCTCCAAGATCAAGGATGGAATTTGAAAGAAGGAGGTCT CGCTCGGCGGAGAATATTAACTTTGATTTCCAGGAGAGTAGGAGGTCCTCTTCTGCATCTCATAGCTCAAAATTGAAGGT TGCAAAGCTTGTGGATAGGTATCTTCAGGAGATTGCCAGGGATGTGAATTTGCCTCTGTCGAAATTCATGGCTCTTGCTG AAATTATGCCAGAATTTGCAAGGCATGATCATGATGATCTATACACAGCTATTGACATTTATCTCAAGGTAAATCTTCTG ACAAGAATTTCTATTTTGTTTACATAATTACTGCATTTTGTGCACAGATAGAAATAAATAATAATTAGAATTCGGGTGTA CCCAAGAGTTAGCTCAAGTGGTAAGAGTTAGGGGACATAAGGGTTTGGTGGGATGAAGGTGAAGGTCCAGGGTTCGATCA TTGAGGAGAGTCTAATTTACTAACATTACTAACAACTAATATTTGCCTATAAAGGGTAAGGATTGTACTACTTTAAATAA AGGGTTAATTGGTTATATCTCTTGTCAATATGAAATTTCTTAACACTAATTACCAAGAAGAGGAGGGAAAAGAAAGCTAA GAACATAATACTGTGGCCAGACATGTTTGAGTTGTGGGGACAGAATTAGTGGATAATTGGACAAACAACTCAGACCTTAA AATCATGTCTATTCATTATTTATTTCGGGTTTAAGTGCAGGCTAGTTCACCATAATTTGTATAGTTGCAGGTTCAGTTTT TTTAAACCAGAAGAAAAAATTGCCTCTGGATTCTTAAACTATATATGAAGGAAATAACAAATTGAACACTTTTAGGTATG GGAGAAAATGAAAAGGAAATTAATGTTTTTAGGTCATCCATAATTCCATATTGAACACTTTGGTAATGTAACTTTTTTTG AATAGAAGAAGGAAAGGAAATCAAGGCTTAAATAAGTTTTTCGTCCCTAACCTTTCCATAATACCTGGTTTTCGTCCCTC GTCGGAGCAAAGGTGGGGTTTAGTCCCTAACCTTTGCCAAAACGTTTGGTTTTGGTCCCTCCGGAGCTCTGGGTCAACGC CGGAGCTCCGGTGGCCCATGTGGCATGACCACGTCACTTTAATGAGCTCAGCTGGAATTTATTTTTATTTAAAATATAAA AAAAACACATAATTAAAACCCTCATAAATTTTCTGGATTTGCAAATTGGCACCTTGTCAGTTGTCTGTATAGCTGTTTAG TCCTGGCGTGTTCGAAATTAATCAGAATAAAACTCTTGAGGACACTGAACTCAATTCACGGCTCAGTTTGGGAAATCACT TCAGCTTCTTATTTGTGTCACTTTTGACCTACAAGTATCACTAAAATCTCTATTTGTTTAATTGAAAATTTCAGGCTCAT CCACAACTGAACAAGAGCGAAAGGAAAAGACTATGTCGAATTCTAGACTGCAAAAAACTATCTCTGGAAGCCTGCATGCA CGCTGCACAGAATGATCTACTCCCTCTAAGGGTGGTTGTCCAAGTTCTCTTCTTTGAGCAAGCTCGAGCTGCAGCATCCG GTAGCAAAGTCACTAACATGGCGAGCAACATTAAGGCACTACTCACTGCTCATGGCATTGACCCTTCAAAACACACAGCT CCATTGAGCACTACCACAAGTATACATGCTGATGACAATTGGAGTGTTTCTGGATTCAAGTCACCAAAGTCAATTACAAG GAATTCAACTCTCAGGATGAAGCTAGCTGAGGATGATGACTTGGATGAATCCAGTGATGGAATTGGGAGAAATTCTAGAT TCAAGCCAAAACGAATGCTTAGCAAGTTGTGGTCTACCAATAGAAGCGCCACTACAAAGATTTAAGTGAATTTTTAAGAG TTTTAGTTGGGAATGGTGAACTTAGAGGGTAGCATATACTACATTTTACTCTTTTGCTAAAGGCCTTGTAAGTTACTAGG GAAAACCAAAGAACTTAAATGTGCAGTGTTACCTTATAATAATAAGAAATGAGATTTTCTCAACCTTTGAGGAAATTTCT TTGGTAAATCTCATATGCGAAATTCTGGATTATGAATCTCAGGTGTAAGTGACGAATCCTAGGACCAATGGAGATGTTTT TGTCCACGAATCTATGTTATGTTCATATTTAGTGGTTCACTTCATGGAGTCCGAACTTTGGTAACAAATTTATTCTTTGT ATTTTCATTTGCAAAGTATTTTGCTAGATGGATTACTCCTCCTTTCTGGAATTTGCTCAAGCCTTTTTCCCTGAAG
CDS sequence (LotjaGi4g1v0159000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTTATGAAACTGGGATCTCGTCCAGACACCTTCTACACTTCAGAGTCTGTAAGGACTGTCTACTCTGAAGTTTC AAGCGACCTGATAATTCAAGTGAAAGGAATTAGATACCTTCTCCACAAGTTTCCCCTGCTTTCCAAGTGTTCGCGCCTGC AAAGGCTATGCTCAGACCACTTTCCTGATTCTCCAAAGCATCAAATAGTACAGCTTCCTGATTTTCCTGGTGGGGTGGAG GCCTTTGAACTGTGCGCGAAGTTCTGCTATGGAATCACCATCACTCTCAGCGCTCACAACATTGTCTCAGCACGGTGTGC TGCTGAATACTTGCAGATGACAGAGGATGCTGAGAAGGGAAACTTGATTTACAAGCTTGAGGTTTTCCTAAACTCCTGCA TTCTTCATGGCTGGAAGGATTCCATTGTAACTCTACAAACCACAAAAGCATTAGCTCTGTGGTCAGAGGACTTGGCAATT GCAAGCAGATGCATTGAAGCTATTGCCTCAAAGGTCTTAAGAAACCCCACAAAGGTGAGCTTGTCACATAGCCATTCGCG ACGTGTCAGAGATGATATTTCTTTCAGCGGAACCGAAAGTCTCAATCTCAGACACAAATCATCAAACAGATGGTGGGCTG AGGATTTATCAGAACTAAGCATAGACCTCTATTGGAGAACCATGATAGCTATCAAATCTGGTGGCAAGTTACCCTTTTAT CTCATTGGTGACGCGCTGAAAGTTTATGTGTCTCGAATGCTACCAAATATCAAGAGAAATATTGAGCTAGCTGGATCTGA TTCAGATTCAGATTCAACAATTGAAATAGCAACTTCAAAGCAGCGTTTGCTCTTGGAATCAATAGTAAGCTTGCTTCCAT CTGAGAAAGGTGCTGTTTCTTGCAGCTTCCTTCTCAGACTCTTGAAAGCAGCCAACATTCTCAATGCTTCTTGTTCATCT AAAATGGAATTAGCAAGAAGAATAGGACTTCAATTAGAAGAAGCCACTGTGAATGATCTTCTAATTCCCTCAGTATCTTG CAAACATGATATGATTTATGAAGTGGATTTGATGATGAGTATATTGGAACAGTTCATGGTTCAAGGTCAGAGTCCACCAA CTAGTCCTCCAAGATCAAGGATGGAATTTGAAAGAAGGAGGTCTCGCTCGGCGGAGAATATTAACTTTGATTTCCAGGAG AGTAGGAGGTCCTCTTCTGCATCTCATAGCTCAAAATTGAAGGTTGCAAAGCTTGTGGATAGGTATCTTCAGGAGATTGC CAGGGATGTGAATTTGCCTCTGTCGAAATTCATGGCTCTTGCTGAAATTATGCCAGAATTTGCAAGGCATGATCATGATG ATCTATACACAGCTATTGACATTTATCTCAAGGCTCATCCACAACTGAACAAGAGCGAAAGGAAAAGACTATGTCGAATT CTAGACTGCAAAAAACTATCTCTGGAAGCCTGCATGCACGCTGCACAGAATGATCTACTCCCTCTAAGGGTGGTTGTCCA AGTTCTCTTCTTTGAGCAAGCTCGAGCTGCAGCATCCGGTAGCAAAGTCACTAACATGGCGAGCAACATTAAGGCACTAC TCACTGCTCATGGCATTGACCCTTCAAAACACACAGCTCCATTGAGCACTACCACAAGTATACATGCTGATGACAATTGG AGTGTTTCTGGATTCAAGTCACCAAAGTCAATTACAAGGAATTCAACTCTCAGGATGAAGCTAGCTGAGGATGATGACTT GGATGAATCCAGTGATGGAATTGGGAGAAATTCTAGATTCAAGCCAAAACGAATGCTTAGCAAGTTGTGGTCTACCAATA GAAGCGCCACTACAAAGATTTAA
Protein sequence (LotjaGi4g1v0159000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFMKLGSRPDTFYTSESVRTVYSEVSSDLIIQVKGIRYLLHKFPLLSKCSRLQRLCSDHFPDSPKHQIVQLPDFPGGVE AFELCAKFCYGITITLSAHNIVSARCAAEYLQMTEDAEKGNLIYKLEVFLNSCILHGWKDSIVTLQTTKALALWSEDLAI ASRCIEAIASKVLRNPTKVSLSHSHSRRVRDDISFSGTESLNLRHKSSNRWWAEDLSELSIDLYWRTMIAIKSGGKLPFY LIGDALKVYVSRMLPNIKRNIELAGSDSDSDSTIEIATSKQRLLLESIVSLLPSEKGAVSCSFLLRLLKAANILNASCSS KMELARRIGLQLEEATVNDLLIPSVSCKHDMIYEVDLMMSILEQFMVQGQSPPTSPPRSRMEFERRRSRSAENINFDFQE SRRSSSASHSSKLKVAKLVDRYLQEIARDVNLPLSKFMALAEIMPEFARHDHDDLYTAIDIYLKAHPQLNKSERKRLCRI LDCKKLSLEACMHAAQNDLLPLRVVVQVLFFEQARAAASGSKVTNMASNIKALLTAHGIDPSKHTAPLSTTTSIHADDNW SVSGFKSPKSITRNSTLRMKLAEDDDLDESSDGIGRNSRFKPKRMLSKLWSTNRSATTKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 616 | 616 | 2.4E-264 | – | |
| PANTHER | 1 | 616 | 616 | 2.4E-264 | ||
| CDD | 19 | 125 | 107 | 3.42956E-41 | – | |
| Gene3D | 20 | 175 | 156 | 8.8E-9 | – | |
| SUPERFAMILY | 20 | 115 | 96 | 5.73E-16 | ||
| ProSiteProfiles | 28 | 98 | 71 | 8.627 | ||
| ProSiteProfiles | 210 | 515 | 306 | 90.688 | ||
| Pfam | 211 | 491 | 281 | 8.5E-96 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0159000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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