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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0159400 |
| Transcript ID | LotjaGi4g1v0159400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|I3SQ21|I3SQ21_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0159400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:28286572..28288066) extracted from Lotus japonicus Gifu genome v1.2.
GTTAAAGAAACATAGTCTCACCCATGGCTTCTCATAGCTCCTTGGGAGAACACAAAAAAAATCATTTCTAATGATTCCTG GAAGGGCTTTCTCTTTTGCTACCAACATCGATCTACGGTGACAGTCTTGAGGCACTATCTCATCGTTGTCACCATACATA CACTATTTCAGCTGGTCGCCAATATGGAAGACATGATTAGCCATTTATCAGACGATATCCTCTGTCACATACTGTCTTTT CTTCCAACTGAACAAGCAATTGCCACAAGCGTTCTTTCAAAGAGGTGGAGATCCCTATGGATCTCAGTCCCCGTTCTCAA CTATGACAATCAAACTTATCTCAAAAACCTTAAACCATCATATTGCTTTGAAAGGTTAATATACGCCACCATTCTTGCCA GAGGTGTGCAACGACCTATCAGAACGTTCCGTCTCAAATACGAGGTTTTTCATGATGAACGTGCCAATGCCGATATCAAT GTTTGGGTGGACACTGTTATTCAACGTGGGGTTGAGAACATGGACATCGAGATTGAATTTGATCCTCAGTATTTGGGATA CGAGTATATCATTTGTTTGAGCCCCAAAATTCTCAGTTGCAAAACCCTTGTTGCTCTCAAGTTGAAAGAGGTATCTCTGA CTGCTTCTTCTTTTATTGAGCTTCCCTCCCTCAAATCACTAGATTTGGAAACTGTGAAATTTCAAGAACCTCAATATTTT ATGGACCTTCTTTGTGGATGTCCAATGCTTGAGGATTTGAAAATAAATTGGCTTGATTATGAATATAGTGGCCCTGTTTG TAAGGAACGGGTTAAAAACTTACCTGAATTGGTGAAGGCTGATATACGTTTTATTGGTTTGGAATATATGAATTACGATA GTACCAATTATCTTTTGGAAGCAATATCTAATGTGGAAATTTTGACCATTCAAGATTATGAAGAGTTTGGGGTTGATGTT GGTAATGCAGTTGCTGGATTTTCTCATTTAAGACATTTGGTCCTCACTGTGCCTTTTGTTAAAAAATCACATTGGGTACT ATTGATGCTCAAGAATTGCCCCAAGCTTCAAAGTTTTACACTTGATATTTCTTTTCAAGCTGAGGATGTTCTACCATACC CTGATTTTGCTCCTGAGTGCCTTACTTTATGCTTAACTAAGTGTTATTTGAAATGCTATGGAGGTAGAGAAAATGACCTA AAACTTGCAAAGCATATTTTGAAGAATTCAACATACTTACAGTCCATGAAAATTTGTTGTGGGTCACGTAATCCACTTGA AGTACTGAAAGAGTTAGCTTTCTGCCCAAGGAAATCTGCATCATGTGAACTATCATTTTATTGATAGGTTTTCTAGTAGC TGCAAAATTTTCCAGATGACAGCATGTGTCATTTTTTATAGAGAGAAAATTATATTAGCAAAAAGCTTGAGAAAAGCACT CTTGTAAGACCTAGAATTTCGAGAGTTAAATTATTATTTGAGTACTTGTTTTACG
CDS sequence (LotjaGi4g1v0159400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGACATGATTAGCCATTTATCAGACGATATCCTCTGTCACATACTGTCTTTTCTTCCAACTGAACAAGCAATTGC CACAAGCGTTCTTTCAAAGAGGTGGAGATCCCTATGGATCTCAGTCCCCGTTCTCAACTATGACAATCAAACTTATCTCA AAAACCTTAAACCATCATATTGCTTTGAAAGGTTAATATACGCCACCATTCTTGCCAGAGGTGTGCAACGACCTATCAGA ACGTTCCGTCTCAAATACGAGGTTTTTCATGATGAACGTGCCAATGCCGATATCAATGTTTGGGTGGACACTGTTATTCA ACGTGGGGTTGAGAACATGGACATCGAGATTGAATTTGATCCTCAGTATTTGGGATACGAGTATATCATTTGTTTGAGCC CCAAAATTCTCAGTTGCAAAACCCTTGTTGCTCTCAAGTTGAAAGAGGTATCTCTGACTGCTTCTTCTTTTATTGAGCTT CCCTCCCTCAAATCACTAGATTTGGAAACTGTGAAATTTCAAGAACCTCAATATTTTATGGACCTTCTTTGTGGATGTCC AATGCTTGAGGATTTGAAAATAAATTGGCTTGATTATGAATATAGTGGCCCTGTTTGTAAGGAACGGGTTAAAAACTTAC CTGAATTGGTGAAGGCTGATATACGTTTTATTGGTTTGGAATATATGAATTACGATAGTACCAATTATCTTTTGGAAGCA ATATCTAATGTGGAAATTTTGACCATTCAAGATTATGAAGAGTTTGGGGTTGATGTTGGTAATGCAGTTGCTGGATTTTC TCATTTAAGACATTTGGTCCTCACTGTGCCTTTTGTTAAAAAATCACATTGGGTACTATTGATGCTCAAGAATTGCCCCA AGCTTCAAAGTTTTACACTTGATATTTCTTTTCAAGCTGAGGATGTTCTACCATACCCTGATTTTGCTCCTGAGTGCCTT ACTTTATGCTTAACTAAGTGTTATTTGAAATGCTATGGAGGTAGAGAAAATGACCTAAAACTTGCAAAGCATATTTTGAA GAATTCAACATACTTACAGTCCATGAAAATTTGTTGTGGGTCACGTAATCCACTTGAAGTACTGAAAGAGTTAGCTTTCT GCCCAAGGAAATCTGCATCATGTGAACTATCATTTTATTGA
Protein sequence (LotjaGi4g1v0159400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDMISHLSDDILCHILSFLPTEQAIATSVLSKRWRSLWISVPVLNYDNQTYLKNLKPSYCFERLIYATILARGVQRPIR TFRLKYEVFHDERANADINVWVDTVIQRGVENMDIEIEFDPQYLGYEYIICLSPKILSCKTLVALKLKEVSLTASSFIEL PSLKSLDLETVKFQEPQYFMDLLCGCPMLEDLKINWLDYEYSGPVCKERVKNLPELVKADIRFIGLEYMNYDSTNYLLEA ISNVEILTIQDYEEFGVDVGNAVAGFSHLRHLVLTVPFVKKSHWVLLMLKNCPKLQSFTLDISFQAEDVLPYPDFAPECL TLCLTKCYLKCYGGRENDLKLAKHILKNSTYLQSMKICCGSRNPLEVLKELAFCPRKSASCELSFY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 383 | 382 | 3.0E-65 | – | |
| PANTHER | 2 | 383 | 382 | 3.0E-65 | – | |
| Gene3D | 3 | 309 | 307 | 2.3E-29 | ||
| SUPERFAMILY | 3 | 45 | 43 | 1.15E-12 | ||
| Pfam | 5 | 40 | 36 | 5.8E-8 | ||
| SMART | 8 | 47 | 40 | 8.3E-4 | ||
| SUPERFAMILY | 132 | 329 | 198 | 1.33E-13 | – | |
| Pfam | 162 | 187 | 26 | 1.9E-4 | ||
| Pfam | 314 | 357 | 44 | 1.7E-9 | ||
| SMART | 318 | 386 | 69 | 2.7E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0159400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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