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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0162900 |
| Transcript ID | LotjaGi4g1v0162900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein LSM12 like; TAIR: AT1G24050.1 RNA-processing, Lsm domain-containing protein; Swiss-Prot: sp|Q6GP89|LSM12_XENLA Protein LSM12 homolog; TrEMBL-Plants: tr|I3SYU2|I3SYU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0162900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:30347000..30350168) extracted from Lotus japonicus Gifu genome v1.2.
GGATGAGAATCGCAAGCAAAATGTGAAGGTTGAAACTTTGCGAAGGGTAAACTAGGAACAACAATAGTAGTAGTAGGAAA CAACAAATAGTTTTGCATCATCAGGGAAAAGGAAAACGGCAATGATGGAGGTTAGCAACAGCGTAGAGGAGTTAGCGATT GGGTGCATACTCTCGATCAGGACAACATTGGGTGACGAATTCGAAGGCCAAGTTGTCACCTTCGATCGCCCCTCCAACAT CCTCATACTTCAACAAGGTTCCAAACATGGCCCTCATCGAAATTTCAGGTTGTTGAAGGCCAATTACATCAAAGATTTCA CTTTTCTAGGTCAAGCCGAAGACCCACTTGATCCAACCAACTGTTTCCTTGATCTCACCGCTCTCCAAGCTAGGGAAGTT GTTGCCATCAGGTTTTCATTCATTCTCTTGCAATTTCATAACTTTGTTCTTTCTTCTTCGTTTTGATTCTCTTGATGTGT GATTTCATGTGATTTTGGGTTTGCAGACAAGCCGAGGCAGATGCTGAGAGGATTGGGGTTGGTGTTACCAGTGAGGCGCA GAGCATCTTTGATGCTTTGTCTAAAACGTAAGTGCTGAGTAGTAATATCGTTTGATTGTAGAAAATCTTATTCATGAAAC TTGGCTCACCCATTTGTTATGTTAGACTAGATATTCCAAGTTTCCCTATAGATTGAATAGTGTGAATGTCACATGTGAAT TGCCTAATTATTATCTGTGAGTGTTGGAGATTAATTATTTGAGTACTTTAACTTATAGTAAGACCAGTGTTGTTAATTGC GGATGGCGGGTCACGGCGGAAAGCCGAAATCCTGCCATACATGACAAATAATGGCAACCATATGGAGGGATATTGGCCAT GATGGAGAGCCAAAAAACTGCCATGGCGGATATTTGGTAACATTGAGTAAGACTACTATAACATTTTACCAACACCAGTA ATATAATGATATTACGTATTGTCGTAAAATATCTAAATGAATTTTGGTCTATCTTGCAGTTGTTTCACAATTTTAGCTAG ATATCCTATGATAATGTATGCTGATATCCTCCGCTGCTATTACTTGATAATGGAATGTTAATGAATACTTGGATGGTGAT TGGCGACTGTACTGGACAAGATAGTTTTTGAATATCTGACTTTAGTAAGATATGTTTGACTTTAGTTCGATATATTAGGT GTTGAATATCTGGCTTTAGTTAGATATGTTTATATATGGCGGGCTATGGCAGCCATAATTCCTGTCGTTGTACTTAGTTC TACCTTCTGGAGGCTCTTTGGATTCTGCTAAGTGTCTATTACTTTATTCTATATAGTTTTTTCGGTGTAGTCAAAGGTAC AGAAAAGTGGTTATGCTGCCTTAGACAAGCCTTCTTGGTTCTGATCGTCTCGGGAGACATTCCTTAATGCTTTATTGATT ATTTGATAATCCAATGTCCAAGATATTAAACCTAGCAACAAGGAGCCTAGGATTTTGTTATTTACAACATGTTATTCATA TAATTTTACAATGAATTTTATCATTGTTTTGTAAATTTTTAAGGAAATTTAAGACAGCTATTCAATAATTTCTTTTTTCT TAGTGTTCTGATATTATCCTCTTTCTTAAGGCATGCACATTTTGGTGCATCTTTCCATGGAACATTAAAATCCCCAGTCC CCCAACACCCCCTTTAAGGGAGTTTTCCCTTGAGTTTCTAGCTTTTGTATATTATTCTTGATAGATATGATTTGTGAACT ACTAGTCTAGTGCTACTTAGTTTTTCTTTTAGCTGATGATATTAGCATCTAACCAGGCTTCCAGTCCGCTGGGACAAGAC GGTCATAGTTGTTATGAATGAGGTGCGTGTTGGCAGTCCTTATAACTCGGATTCTGTGATTGGAGGTACTCCTGCTGCAA ATGACCGAGTGAAGAAAGTGGTAAATACCTCTCTATGTCCATTTATTTAGTCTTAAATATGCTGTGATGTGTTCAAATGT TTGTAACAATGGCATATCAACATCATGTGAACTAGGGTTGCTTGTCCTTGTAACCTTATGATTTATTACTGATTTACTAT TAGCAGAAGCAAAATGAAACATAAGCCGGAAAACTATGTTTTCATGGTAATTACATTTGATTTTTCTAAAAGAAGCTCTT TTATTATTATTACATCCGTTAATTTGAACTGGGCTAGTGAGAGGATTTTGGGTAGTTCAAATGCCCGTCCTTCATTGCAT AAAAAAAAAGATGCATTACTTTGGCAGACTCTATCAGCTAAGATCTATTTTGTTGATTTCATTTGATACTTTGAGGAAAA TGATACACCTGATGTCTCTGTGGATAATTTCACCCTTAAAACCTTTCCTCTCCTGCAAGAGTTTTTGTGAACTGGTATTT TGATGATGATTTTCATTTTTCTTATTTGTAGCTCGAGTTCGAGAGGAAGAGGTTGCAACTTCGCGGTTCTGGTGGTCTGT AAAATTAGACATTTGCATCCTATTATTATCAGGAAAAGGATGAAACATGATGGATATGTTGCTATTAAGAAAACCCTATA CAAGAGGGTTTTTTCAAGACATTCTTTCAGATATCTTTTGATTATCTGCTGTCTTGAGCTGTCAAGTTCTGTCATGGTTT TGGAGTTCATTTGAGGTAGTTCCTCCAGATTCTTTCCAAGAGTGAATGAATCTGAAGCATATAAATTTATGTTGTTGTGT TAGACTTGGAACCCAAATAGGTGTCTGGTTTTTATAATTTATGGGTTTGCCTTTGATAAGATTAACCAATTACAATGAGC TAACATGACTCCAATTGAGTTTAATTCATTCCTTATATTAAAAATCAAATGCTTTGGATTAATCAAGCTAATATTTCTAC CACAGATTTCTAATTTTGTTTATTCATTATTTCTAGAACAAATTTGTGGTATGATTTATTTGTTTCATGAGAAATGTAGC AACTCTCTTTATTACTTTGTTTTTCGACGTGACCTACTAAATCACATGCGTCTTTTTTCTTATTTGGTTGGACTCACATG AATTTTATCTATAAAGCATTGTGTCGGAAAGAGAGTTTTAGAGATGAAGCTAATTGTTTTAGTTTTAATCCTCTTAGGAT TGGTTTTAAGATAGAATTTGGCTGCATTGGGAGATATAGAAGATCATTT
CDS sequence (LotjaGi4g1v0162900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGGTTAGCAACAGCGTAGAGGAGTTAGCGATTGGGTGCATACTCTCGATCAGGACAACATTGGGTGACGAATT CGAAGGCCAAGTTGTCACCTTCGATCGCCCCTCCAACATCCTCATACTTCAACAAGGTTCCAAACATGGCCCTCATCGAA ATTTCAGGTTGTTGAAGGCCAATTACATCAAAGATTTCACTTTTCTAGGTCAAGCCGAAGACCCACTTGATCCAACCAAC TGTTTCCTTGATCTCACCGCTCTCCAAGCTAGGGAAGTTGTTGCCATCAGACAAGCCGAGGCAGATGCTGAGAGGATTGG GGTTGGTGTTACCAGTGAGGCGCAGAGCATCTTTGATGCTTTGTCTAAAACGCTTCCAGTCCGCTGGGACAAGACGGTCA TAGTTGTTATGAATGAGGTGCGTGTTGGCAGTCCTTATAACTCGGATTCTGTGATTGGAGGTACTCCTGCTGCAAATGAC CGAGTGAAGAAAGTGCTCGAGTTCGAGAGGAAGAGGTTGCAACTTCGCGGTTCTGGTGGTCTGTAA
Protein sequence (LotjaGi4g1v0162900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEVSNSVEELAIGCILSIRTTLGDEFEGQVVTFDRPSNILILQQGSKHGPHRNFRLLKANYIKDFTFLGQAEDPLDPTN CFLDLTALQAREVVAIRQAEADAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVGSPYNSDSVIGGTPAAND RVKKVLEFERKRLQLRGSGGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 179 | 176 | 1.1E-75 | ||
| SMART | 79 | 165 | 87 | 3.4E-27 | ||
| Pfam | 83 | 165 | 83 | 9.8E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0162900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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