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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0164400 |
| Transcript ID | LotjaGi4g1v0164400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine/serine-rich splicing factor, putative; TAIR: AT1G23860.1 RS-containing zinc finger protein 21; Swiss-Prot: sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A; TrEMBL-Plants: tr|I3SKI2|I3SKI2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0164400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:30994514..30998455) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAATATGTGATGTAAAAAAATTGTTCCCAACATTGTTCGACAAAAAAGAAGTGATGAACTATTTGAATTGATGAAAT TCAGAAATTCTAGGGCTTTATAGCCTTGTGGTTGATTCACCTTCCGATCATTCAGAATCCTCGAGATTTCTCTCATTTGC AGGTGAGTGAGTGCTTTGATCTTCACTTAACTCTTCTTCGAATCAAAACCCTGTGTCTGTAACTGTAACGATTAAAGTTC TTTCACTTCTCAAACTCTTTTTTATCAATATTATTTTCCCCCTTTTCTTTGCAGGCGTGCAAAGTTTTCAGTTTTTGTTC ACTTGGGACTCGATGTTCATACAAATTGCATTTTTTTCCCATTATTTGAGATAACTGATGTGGTTTTGCTTTGTTCTGAA GAAATAAAATTTCTATAGGGTGGTTCTGATTTTGGGACAATGTCTCGGGTTTATGTTGGGAATTTGGACCCTCGTGTCTC TGAGAGGGATCTCGAAGACGAATTTCGCTTGTATGGTGTTCTGCGAAGGTAGTTCTCTTTCTTTATCTCTTCTTCATTGG GGAAAAATTGATCAAATTGTTTTCAGTTTATGCATCATTTGACACCAAGATAGTGGTGATGAATACCAATTATTGACTTA AATTTAATGGTGACTAAATTATTCATCATCTGAATTCCAATATGCTTGTTCATCCCTCATATGTGATGTGATTTTCTCTT TTTGTTTATCCTTAATTTCAATTTTCAAACATCTTTTGTGAATTTCGAAACCCGGGAGTTCATACAATTTTTTGTATTGG CAATTATGTCTTCTGTTTATCTCAGGGTCTCATCAAGCTTGACATTATGTTCTCCTATGTGCTCTATGCAGTGTCTGGGT TGCACGTAGACCACCAGGATATGCATTTCTCGAGTTTGATGATAAGAGGGATGCACTGGATGCAATCCATGCTTTGGATG GTCAGTATGTTTTCATGTATTGTCGGTTTGTCATTTTGGGTCCTTGTGTACCCAGTCCTTGTTAAGCATTTGTTCTTGTG CTTTGCTGCATCATCTAGATTTGGATTGGCATTAATGTTTGCATGTCATGCAGGAAAAAATGGCTGGCGTGTAGAGCTTT CTCATAATTCTAAGGGTGGTGGAGGAGGCCGTGGTGGTGGGCGTGGGCGTGGAGGTGAGGACCTGAAATGCTATGAATGT GGTGAACCTGGACACTTTGCTCGTGAGTGTCGCTCCCGCGGTGGTTCAAGAGGCCTGGGAAGTGGAAGGAGACGAAGTCC TAGTCCTTACCGGCGTCGTAGAAGTCCAAGTTATGGTTATGGCCGTAGGTAAGTTACAAGTCCATGCTATATATAACTAA AAAATATCTATTTCATATAACTCTTTCAAATGTATGAGCCTTCTAGCATTGTGTTTTGTACGTAGTTTGGATTGAATTTC AGTATATAGAAATACAAATATGTTTGATATATTGATTACAAAGCATCAATTAAAGTATGATTAAGCAATGATATAGGATC CCAAAAGTAGGTATTCGAAGTGTTTGCATGACTCTTAACCTGCCTAAACAAGCATCAAATTGAAGAATCCAATGACATGC TCCGGGCGGCATATCTTGTTCATTTTTAAATTTGGTATAGGCTCAGCCTTTAGTCTTATGAAATTTCATGGGGTTCTTGT CATCTTGTATTGCTTGGAAAATTTGCGAAGTAGCACCCTTTTTAACTCAGTATCTCAACTTCCTGTCCTATCTTTTATTC CTTGTTAATTTGTGGATTTGTTATTTTCTATGATGTAGGATCTGTTCAAATGTAGATTTGTATCTCTCTGAAGTTATACC ACTTTTTCCATATTATTAGTTGGCATAAATTTCTTTCTTCCTGTCGAAACCTAATTGTCATTAGTCTATAGTATTTTTAG TCTATCCTTTCATCAGACTGAAAATTATGCCTACAAGCTAAACTAAATCCAAATGAGTTCATTTGAATGACTGGAGAAGA TCTCAAACTTAATATGGGTTTGACAGCCTGTCAAATTGGCCCTTGTAGTATTTGTAGTTTCAGTCTACATATTCTAGTTG TATGGTAATAAGCATCATAGAAAAAGGCACTTTTGATGAACAAATCCTTTGCTGATGTATTTATCTTCTGATATAGTATT TTTGATGTTTTATTTTATCAGGAGTTATAGTCCTCGTGGGAGGAGATCTCCAAGACCTCGTAGCATAACACCTCCTCTTC GTGGTCGCAGCAACAGCAGGTCCCCTCCATACCGTCATGCTCGTCGTGTTTCACCTTATGCTAATGGGTATGCTTTAGTG TGTTTGACTCAATTGTTTTTGATACTTTAGGATAAATAATATGAGAAACGATTACCCATGTTGATTTAAATTCTCATGAT TTTATTTTTCAGAGATTAAGATCACAATGTGAATGGAGCAAATGCTAAATAATTGTTAGGAGCCTGCTCTGCTTTATTCT AGTTCCTCTAGGATTGGATGAGCATCCAACATACATGTTAATTATGTCGATGTCATGACAAAGGGTATTGTTGGGAACTT GGAATATGACGTCACTTGTGTAGTGTAATAGCTGCCAAAAGGGTGCATTGGACACTGTTTTGCATTGGATGTCTTGTCTC TTCAGCTTACTGAATCCTGAAGGTTACTTTAGTCATCCCTACTTTATATAGTTATGTTAGTTGTTTGCTTTTAGTCTTAT CCACTATGGTAATTTTTATATATTTGCATCAAACGCTCCTGAAATGTTCATGTTTCTTTGTTTTGAGGTGCAATTATCAG CCAAAACAAAGCTTCGTTTCGCCACTTAGTACTTCTTGTCTGCTTCTCTGCTGCATGCCTCTACAGTCATCTTCTTGCTT CTGCATATAAGCTGACTAAAACTGCAATGTTGGCTAGTTGCTCTGGGTATGACCTTTTTGTTGACAATGCTACAGTTGCA TCCTTCTTTTGAATTGGAGAAGTCCAAAGGTGGATGGATAAAAACCTAGTTATTCACTTGCTGCACCATCTTTTTAAAAT TGGGACTTGTTTAGTGAGTAGCTGTGTATTGTGTCTGCTTCTCGTCATTCTGTGTGGTTGAATTGATGCTACTTTGGATG TCTGCATCCCAATTAGAGTGTTTCTTGTTTCATCCGTGGTCTTAATGGTACGCGCTTGGCACTGCAATTATCAGCATCTT GGTTGTGTGAGACACTAAGCTTACATCATCTACAAGAGAGTAAGATAAGATTGACCCTATTTAACGAAACGCACAGGCCA ATTGTCTTTCATTCTTCACTTTCAGCCATTCGATTCCTTAGATTTTGCACGCTTCTAACTAGAACTTTTGTCTATTCACA AGCTACTGGGATCTGCTACTAATTGTCCCCCATTTATAAAACTTCCACACTAAGTCGAGTGTATTAACTCCAGTTTATTG ACCTTATTGAGGAATTAAGTTATTGCATTGGATGGTTGATTTTGAGGAATTCAGTTTAGAGTTGGGTGCATTGCCATATT GCCATTTTTCTTTGCTTATTGTATAATCCTTTGACATGCAACGGCCATGCGTGCCGTGATTTGCCCTGGTATTAATTATC CCTTTGGAATTCTATTTTTATTTTTATTTGAAACCCCCTTGGAATTTATATTAAGGTTAGTTGATTTTTGATCTTTTCAG TTATGTTTTTTGGCTTAAATATTCTATTGGTCCCTGAAATTGTAAAGAGAATCAAACCTGATCCTTGTAAAATTTTCGCA TCAAATTGGGTCCCTAAAATTGTTTTTTAAATCTAATTGGGTTCAAAGTGTGTTTCAGGATGATGTGGAACAAATTTTAC CCAATTAGTATTTCCACATGGATTTATATTTTATTTTTAATGCAGATGGGTAAATGATTTTAACAAATTAAAATTAAACC CGAATTAAAAACCTAATTTCTC
CDS sequence (LotjaGi4g1v0164400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCGGGTTTATGTTGGGAATTTGGACCCTCGTGTCTCTGAGAGGGATCTCGAAGACGAATTTCGCTTGTATGGTGT TCTGCGAAGTGTCTGGGTTGCACGTAGACCACCAGGATATGCATTTCTCGAGTTTGATGATAAGAGGGATGCACTGGATG CAATCCATGCTTTGGATGGAAAAAATGGCTGGCGTGTAGAGCTTTCTCATAATTCTAAGGGTGGTGGAGGAGGCCGTGGT GGTGGGCGTGGGCGTGGAGGTGAGGACCTGAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGTGAGTGTCGCTC CCGCGGTGGTTCAAGAGGCCTGGGAAGTGGAAGGAGACGAAGTCCTAGTCCTTACCGGCGTCGTAGAAGTCCAAGTTATG GTTATGGCCGTAGGAGTTATAGTCCTCGTGGGAGGAGATCTCCAAGACCTCGTAGCATAACACCTCCTCTTCGTGGTCGC AGCAACAGCAGGTCCCCTCCATACCGTCATGCTCGTCGTGTTTCACCTTATGCTAATGGAGATTAA
Protein sequence (LotjaGi4g1v0164400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGKNGWRVELSHNSKGGGGGRG GGRGRGGEDLKCYECGEPGHFARECRSRGGSRGLGSGRRRSPSPYRRRRSPSYGYGRRSYSPRGRRSPRPRSITPPLRGR SNSRSPPYRHARRVSPYANGD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 180 | 180 | 2.0E-69 | – | |
| Gene3D | 1 | 73 | 73 | 1.3E-18 | ||
| PANTHER | 1 | 180 | 180 | 2.0E-69 | – | |
| ProSiteProfiles | 2 | 73 | 72 | 15.409 | ||
| SMART | 3 | 69 | 67 | 1.2E-15 | ||
| CDD | 3 | 71 | 69 | 2.15174E-34 | – | |
| SUPERFAMILY | 3 | 85 | 83 | 4.48E-19 | ||
| Pfam | 4 | 61 | 58 | 1.4E-14 | ||
| MobiDBLite | 68 | 90 | 23 | - | – | |
| SUPERFAMILY | 81 | 109 | 29 | 9.57E-7 | ||
| Gene3D | 82 | 132 | 51 | 5.4E-7 | – | |
| Pfam | 91 | 106 | 16 | 7.5E-8 | ||
| SMART | 91 | 107 | 17 | 1.9E-5 | ||
| ProSiteProfiles | 91 | 107 | 17 | 11.037 | ||
| MobiDBLite | 104 | 181 | 78 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0164400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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