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LotjaGi4g1v0164400.2

Overview

Field Value
Gene ID LotjaGi4g1v0164400
Transcript ID LotjaGi4g1v0164400.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Arginine/serine-rich splicing factor, putative; TAIR: AT4G31580.1 serine/arginine-rich 22; Swiss-Prot: sp|Q6K4N0|RSZ21_ORYSJ Serine/arginine-rich splicing factor RSZ21; TrEMBL-Plants: tr|I3SKI2|I3SKI2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0164400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:30994953..30995919) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCTCGGGTTTATGTTGGGAATTTGGACCCTCGTGTCTCTGAGAGGGATCTCGAAGACGAATTTCGCTTGTATGGTGT TCTGCGAAGGTAGTTCTCTTTCTTTATCTCTTCTTCATTGGGGAAAAATTGATCAAATTGTTTTCAGTTTATGCATCATT TGACACCAAGATAGTGGTGATGAATACCAATTATTGACTTAAATTTAATGGTGACTAAATTATTCATCATCTGAATTCCA ATATGCTTGTTCATCCCTCATATGTGATGTGATTTTCTCTTTTTGTTTATCCTTAATTTCAATTTTCAAACATCTTTTGT GAATTTCGAAACCCGGGAGTTCATACAATTTTTTGTATTGGCAATTATGTCTTCTGTTTATCTCAGGGTCTCATCAAGCT TGACATTATGTTCTCCTATGTGCTCTATGCAGTGTCTGGGTTGCACGTAGACCACCAGGATATGCATTTCTCGAGTTTGA TGATAAGAGGGATGCACTGGATGCAATCCATGCTTTGGATGGTCAGTATGTTTTCATGTATTGTCGGTTTGTCATTTTGG GTCCTTGTGTACCCAGTCCTTGTTAAGCATTTGTTCTTGTGCTTTGCTGCATCATCTAGATTTGGATTGGCATTAATGTT TGCATGTCATGCAGGAAAAAATGGCTGGCGTGTAGAGCTTTCTCATAATTCTAAGGGTGGTGGAGGAGGCCGTGGTGGTG GGCGTGGGCGTGGAGGTGAGGACCTGAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGTGAGTGTCGCTCCCGC GGTGGTTCAAGAGGCCTGGGAAGTGGAAGGAGACGAAGTCCTAGTCCTTACCGGCGTCGTAGAAGTCCAAGTTATGGTTA TGGCCGTAGGTAAGTTACAAGTCCATGCTATATATAACTAAAAAATATCTATTTCATATAACTCTTTCAAATGTATGAGC CTTCTAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0164400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTCGGGTTTATGTTGGGAATTTGGACCCTCGTGTCTCTGAGAGGGATCTCGAAGACGAATTTCGCTTGTATGGTGT TCTGCGAAGTGTCTGGGTTGCACGTAGACCACCAGGATATGCATTTCTCGAGTTTGATGATAAGAGGGATGCACTGGATG CAATCCATGCTTTGGATGGAAAAAATGGCTGGCGTGTAGAGCTTTCTCATAATTCTAAGGGTGGTGGAGGAGGCCGTGGT GGTGGGCGTGGGCGTGGAGGTGAGGACCTGAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGTGAGTGTCGCTC CCGCGGTGGTTCAAGAGGCCTGGGAAGTGGAAGGAGACGAAGTCCTAGTCCTTACCGGCGTCGTAGAAGTCCAAGTTATG GTTATGGCCGTAGGTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0164400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGKNGWRVELSHNSKGGGGGRG GGRGRGGEDLKCYECGEPGHFARECRSRGGSRGLGSGRRRSPSPYRRRRSPSYGYGRR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.70.330
1 73 73 6.9E-19
IPR012677
PANTHER
PTHR23147:SF127
1 135 135 2.2E-59 –
PANTHER
PTHR23147
1 135 135 2.2E-59 –
ProSiteProfiles
PS50102
2 73 72 15.409
IPR000504
SMART
SM00360
3 69 67 1.2E-15
IPR000504
CDD
cd12373
3 71 69 1.93473E-34 –
SUPERFAMILY
SSF54928
3 85 83 2.17E-19
IPR035979
Pfam
PF00076
4 61 58 7.6E-15
IPR000504
MobiDBLite
mobidb-lite
69 89 21 - –
SUPERFAMILY
SSF57756
81 109 29 6.13E-7
IPR036875
Gene3D
G3DSA:4.10.60.10
88 132 45 2.2E-7 –
SMART
SM00343
91 107 17 1.9E-5
IPR001878
ProSiteProfiles
PS50158
91 107 17 11.037
IPR001878
Pfam
PF00098
91 106 16 5.1E-8
IPR001878
MobiDBLite
mobidb-lite
105 138 34 - –
MobiDBLite
mobidb-lite
121 138 18 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0164400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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