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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0164800 |
| Transcript ID | LotjaGi4g1v0164800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein; TAIR: AT1G23850.1 transmembrane protein; Swiss-Prot: sp|Q5ZMW6|MDM1_CHICK Nuclear protein MDM1; TrEMBL-Plants: tr|I1N1F6|I1N1F6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0164800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:31055435..31056768) extracted from Lotus japonicus Gifu genome v1.2.
GGGTAATGGTAATTAATCAAATGATAGCCACTCACTTTGCTGGAAAGAAGACTACTAAGTCAGCAGTCAAGTCTTCTCCC TATTCTCTCCTTCCACTAAAGGAGAAACAAGGGAAAACTCCATCAGTGCTAAACTTCACCAATTAATTGTGTCAATATTG TTCTTGAAACTGAAGAAGAGACATGGAGATTGAAGGCAATAAAGCTAAGCTGAATCAGAAGCAGAAGAAGCTTGAGGTTT CTGATGTCCTCAGGGAAGCTGTTATGATCTATTTCAGAAACCTCAACTTCATCATCTTCACATTTCTCACTTCTCTTCCT CTCCTTTTTATCATGCTTTACTTTGAAATTCACCTCCAAGAAATTCTACTTGAAACCTCTCTTATTCTCAACCAACCGCA TGCTCATTCCCTATACCATCACGGCTTCAATCCAGATTCTATTATGAGAATATTCAATATGGATTATGTCTTGAAGTTGA TTCACCTTGGATTTATTTACATGGTGCCTTTGCATCTCTTCGAGCTTGGCTCTGCCATTTTCACTATAGATTTGGCTTCA AAGCAACAATATTCAGAAGAGAAGAAAGTAACTCTCAATCTCAAGGAGATAATATTTCAGAAACCCCTTGACCTATCAAA CTTGAGGGGCACGTTTGTCACATCCATCTATGTTTTGTTCTTGACAACGACTCACCAGCTAGGATTACTATGGATAGTGA TAAATTACCATGTTTTCTTGAAGGACTTGAGTTGTTACATGTTGTTTTTTGTAATTTGCAGCTTGGTATTTGCAAAGGTC TTAAGGACGTGTTTGGAATGGAGCGCGATGTGGAACATGAGTCTTGTAATCTCAGTACTGGAAAGGGTATATGGAGTTGA TGCATTGGCACTTTCAGTTTATTTTAGCAGAGGCTGTCACAGGCGTGGGCTTTTTCTGATGCTGATTTTCTTTTCATGGG GACATCTTTTGAGGCTTTCATGCCATCATCTTATTGGAGAACAAGGAACTTGGTCTGGATTTTACATACAAGTTGGCCTA TTCTGCTTGGTAAATCCACTGAAATGGGTCGTCTTCATGATCTATTTCCATGATTGCAAGGAGAGAAGCTTGGAAAAGAA AACGGATGAGGAATTAGGCAAAGATGTCAAAGTGGTTTCTGAATGAAAACTATATTGATCTTTTATCATTTTATATAAGT CCAGACATGCATTGTAATTTGTAAGAACACACTTGTGTAATGTTTACACTGTTGGAGTATGTATTATACAGATCTTTTGA TTTTGTTATATTGTTGAAATTTTTTATAGAAGACACAATTTTCTTTTCAGTAAA
CDS sequence (LotjaGi4g1v0164800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATTGAAGGCAATAAAGCTAAGCTGAATCAGAAGCAGAAGAAGCTTGAGGTTTCTGATGTCCTCAGGGAAGCTGT TATGATCTATTTCAGAAACCTCAACTTCATCATCTTCACATTTCTCACTTCTCTTCCTCTCCTTTTTATCATGCTTTACT TTGAAATTCACCTCCAAGAAATTCTACTTGAAACCTCTCTTATTCTCAACCAACCGCATGCTCATTCCCTATACCATCAC GGCTTCAATCCAGATTCTATTATGAGAATATTCAATATGGATTATGTCTTGAAGTTGATTCACCTTGGATTTATTTACAT GGTGCCTTTGCATCTCTTCGAGCTTGGCTCTGCCATTTTCACTATAGATTTGGCTTCAAAGCAACAATATTCAGAAGAGA AGAAAGTAACTCTCAATCTCAAGGAGATAATATTTCAGAAACCCCTTGACCTATCAAACTTGAGGGGCACGTTTGTCACA TCCATCTATGTTTTGTTCTTGACAACGACTCACCAGCTAGGATTACTATGGATAGTGATAAATTACCATGTTTTCTTGAA GGACTTGAGTTGTTACATGTTGTTTTTTGTAATTTGCAGCTTGGTATTTGCAAAGGTCTTAAGGACGTGTTTGGAATGGA GCGCGATGTGGAACATGAGTCTTGTAATCTCAGTACTGGAAAGGGTATATGGAGTTGATGCATTGGCACTTTCAGTTTAT TTTAGCAGAGGCTGTCACAGGCGTGGGCTTTTTCTGATGCTGATTTTCTTTTCATGGGGACATCTTTTGAGGCTTTCATG CCATCATCTTATTGGAGAACAAGGAACTTGGTCTGGATTTTACATACAAGTTGGCCTATTCTGCTTGGTAAATCCACTGA AATGGGTCGTCTTCATGATCTATTTCCATGATTGCAAGGAGAGAAGCTTGGAAAAGAAAACGGATGAGGAATTAGGCAAA GATGTCAAAGTGGTTTCTGAATGA
Protein sequence (LotjaGi4g1v0164800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIEGNKAKLNQKQKKLEVSDVLREAVMIYFRNLNFIIFTFLTSLPLLFIMLYFEIHLQEILLETSLILNQPHAHSLYHH GFNPDSIMRIFNMDYVLKLIHLGFIYMVPLHLFELGSAIFTIDLASKQQYSEEKKVTLNLKEIIFQKPLDLSNLRGTFVT SIYVLFLTTTHQLGLLWIVINYHVFLKDLSCYMLFFVICSLVFAKVLRTCLEWSAMWNMSLVISVLERVYGVDALALSVY FSRGCHRRGLFLMLIFFSWGHLLRLSCHHLIGEQGTWSGFYIQVGLFCLVNPLKWVVFMIYFHDCKERSLEKKTDEELGK DVKVVSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | - | – | |
| PANTHER | 11 | 325 | 315 | 1.0E-117 | – | |
| Phobius | 34 | 54 | 21 | - | – | |
| TMHMM | 34 | 56 | 23 | - | – | |
| Phobius | 55 | 94 | 40 | - | – | |
| Phobius | 95 | 113 | 19 | - | – | |
| TMHMM | 99 | 121 | 23 | - | – | |
| Phobius | 114 | 157 | 44 | - | – | |
| TMHMM | 158 | 180 | 23 | - | – | |
| Phobius | 158 | 182 | 25 | - | – | |
| Phobius | 183 | 188 | 6 | - | – | |
| Phobius | 189 | 207 | 19 | - | – | |
| TMHMM | 190 | 207 | 18 | - | – | |
| Phobius | 208 | 218 | 11 | - | – | |
| Phobius | 219 | 241 | 23 | - | – | |
| Phobius | 242 | 249 | 8 | - | – | |
| TMHMM | 248 | 265 | 18 | - | – | |
| Phobius | 250 | 271 | 22 | - | – | |
| Phobius | 272 | 276 | 5 | - | – | |
| Phobius | 277 | 302 | 26 | - | – | |
| TMHMM | 280 | 302 | 23 | - | – | |
| Phobius | 303 | 327 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0164800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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