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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0168900 |
| Transcript ID | LotjaGi4g1v0168900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calmodulin family protein; TAIR: AT1G32250.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q9LQN4|CML17_ARATH Probable calcium-binding protein CML17; TrEMBL-Plants: tr|G7LH05|G7LH05_MEDTR EF hand calcium-binding family protein; Found in the gene: LotjaGi4g1v0168900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:32451877..32453332) extracted from Lotus japonicus Gifu genome v1.2.
TCGATTCCTGGACCTCCCCCTACCCGACCCATATGTCCCCTTATCAAGAATTAAGACTACATGTACTTAATTTAAAATTA AAAGACATCATTAAAGAGAACCAAAAAAGTGTAGCTTTTATAAATAAATAAGATAATATCTCTCATTTATTATGTGCTCT CGCAGTCTCCCTTCTTTGAGAAATTCAAAACAGACCCGACATTTATGTAAACCTCTTAAAATCAGGAGCTGCCATCGGAA AAGGAAGAACAATCTCATCCAAGCACTTGCTCCGATCTCTCACAAGCCCACTACTTTCTCGTGTGAGCTCATCAAATTGC AATAAAACCTTCTTCTTCTTCTTCTTTGATCCCAAAGAAAAATCACAAAGAAATTATGAGCAAGAAGCAAGCAGTGAATC TGGACGAGGAGCAGATCGCGGAGTTAAGAGAAATATTCCGATCATTCGACCGGAACAACGACGGCAGCCTGACGCAGCTG GAGCTGAGCTCGCTGCTGCGGTCGCTGGGGCTGAAACCTAGCGCGGAGCAGGTGGAAGGGTTCATCCAGAAGGCCGACAC CAACAGCAACGGCCTGATTGAATTCTCCGAGTTTGTTGCGGTGGTGGCGCCGGAGCTTCTGCCGGCGAGGTCGCCGTACA CGGAGGAGCAGCTGCGGCAGCTTTTCAGGGTGTTCGACCGCGACGGGAATGGGTTCATCACCGCGGCGGAGCTGGCTCAC TCCATGGCCAAGCTCGGCCACGCTCTCACGGCGGAGGAGTTGACGGGGATGATCAAGGAGGCTGATGCGGATGGTGATGG TATGATCAGTTTCCAGGAGTTTGCTCACGCTATTTCTTCTGCGGCTTTTGATAATTCTTGGGCTTAGCTTAATCACTTTT GCTTAATTAATTTACTTTTTACAGATCTGTTTCCCTTCTTTCAATTTCTAAACAACACAAGATGAATCAATAAATTCCTT ATTTATATATAATAGTAGTTTCTGTTTAAGATAGAGTGTCCATCGTGTTCCTCTTTTACAAATAGTTGTACTATACCTTT TTGATTCAGTAATAAATTATTAGTAGTTAGTCGCCAAGCTATTAGTTAGTTGTATTATACCTTCATCCTTCTTCATCATG GACATCTCATCACATCTAAATTATATGAAGTTGATGATGATGATGTCGATGATGAAGAAGATAAATGATATAAATAAAAT TGTGTTGCTAGATATATCAATTATGTATGTAGCTCAACTGCTTAAGTGTTTGTTTTTCAAGTTTCTAAATTTTATTAATG ATGTTTCACGCCACGTGGTCTGCTTCGTCACTAAACTAGTGTCATATAAGCTCATTCCGTTAGTTTTTTAACGTCAGAGT GGTTGAGGGGTAGACCGTGCACTTTTGTGAAACATTTAGGAAAGAAACGTAGACAAAAAAAGAGTAGGGACGACTTTTTC ACAAAGTTAAAACATC
CDS sequence (LotjaGi4g1v0168900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAAGAAGCAAGCAGTGAATCTGGACGAGGAGCAGATCGCGGAGTTAAGAGAAATATTCCGATCATTCGACCGGAA CAACGACGGCAGCCTGACGCAGCTGGAGCTGAGCTCGCTGCTGCGGTCGCTGGGGCTGAAACCTAGCGCGGAGCAGGTGG AAGGGTTCATCCAGAAGGCCGACACCAACAGCAACGGCCTGATTGAATTCTCCGAGTTTGTTGCGGTGGTGGCGCCGGAG CTTCTGCCGGCGAGGTCGCCGTACACGGAGGAGCAGCTGCGGCAGCTTTTCAGGGTGTTCGACCGCGACGGGAATGGGTT CATCACCGCGGCGGAGCTGGCTCACTCCATGGCCAAGCTCGGCCACGCTCTCACGGCGGAGGAGTTGACGGGGATGATCA AGGAGGCTGATGCGGATGGTGATGGTATGATCAGTTTCCAGGAGTTTGCTCACGCTATTTCTTCTGCGGCTTTTGATAAT TCTTGGGCTTAG
Protein sequence (LotjaGi4g1v0168900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKKQAVNLDEEQIAELREIFRSFDRNNDGSLTQLELSSLLRSLGLKPSAEQVEGFIQKADTNSNGLIEFSEFVAVVAPE LLPARSPYTEEQLRQLFRVFDRDGNGFITAAELAHSMAKLGHALTAEELTGMIKEADADGDGMISFQEFAHAISSAAFDN SWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 82 | 82 | 3.5E-23 | – | |
| SUPERFAMILY | 5 | 155 | 151 | 2.46E-44 | ||
| PANTHER | 6 | 163 | 158 | 1.3E-89 | – | |
| PANTHER | 6 | 163 | 158 | 1.3E-89 | – | |
| ProSiteProfiles | 12 | 47 | 36 | 15.016 | ||
| SMART | 16 | 44 | 29 | 9.3E-5 | ||
| Pfam | 16 | 76 | 61 | 6.0E-15 | ||
| ProSitePatterns | 25 | 37 | 13 | - | ||
| ProSiteProfiles | 48 | 83 | 36 | 10.385 | ||
| SMART | 52 | 80 | 29 | 0.77 | ||
| ProSitePatterns | 61 | 73 | 13 | - | ||
| Gene3D | 83 | 160 | 78 | 6.8E-25 | – | |
| ProSiteProfiles | 88 | 123 | 36 | 15.378 | ||
| Pfam | 90 | 153 | 64 | 3.6E-14 | ||
| CDD | 92 | 154 | 63 | 1.69115E-19 | ||
| SMART | 92 | 120 | 29 | 4.9E-5 | ||
| ProSitePatterns | 101 | 113 | 13 | - | ||
| ProSiteProfiles | 124 | 159 | 36 | 12.644 | ||
| SMART | 128 | 156 | 29 | 6.7E-6 | ||
| ProSitePatterns | 137 | 149 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi4g1v0168900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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